Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Reverse (-)

21970534 .. 21973494

Gene Structure 2961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30070.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGATGATACGCAAAGTTCTCCCTTGCTGAGCATCAAGGCTTCACCGGAACCCGATTATGCTCCGGTGAAGACCTTTCAGGAGGGCATGTCAGTTTGTTGGAAGGAGACTGTGAAGCTGTGGAAAGTTGCAGCTCCGGTGGCTTTCACGACTCTCTTTCAGTTCCTCATCCAGTCTGTCACCACCATCTTCATCGGACATCTCGGAGATCTTGAGCTTTCTGCTATTTCTCTTGCTCATAATGTCATCAACGCTATTGCCTATGGCTTCCTGCAAGGTATGGCAAATGCACTTGGAACTCTATGTGGTCAAGCATATGGTGCAGGCCAAGTTGATTCACTTGGCATCTATATGCAGCGCTCCTGCATTATCCTATCCATCACTTGCTTCCTCCTTTCGTCGATTTACATTTTTGCTACTCCATTCCTAAAGATTTTAGGCCAACAAGACAGTATAGCTGAGTTTGCTGGAAAATATTGTCTGTTGATTATCCCTCAGATGTTCTCCTTTATCATCAATCTGCCCACCCAAAAGTTTCTTCAAGCTCAGAGCAAGGTGGGGATCATCACATGGATCTCCTTTGTGGCTCTAGTCACACACACAGGACTTCTTTATCTCTTCATTAGCGTACTCGGCTGGGGGGTGAATGGTGCAGCTGTTGCTTATAATATCACATTTTGGGAAGTTGCAGTTGGTCAGTTTATGTATGCTGTGTTTTTTTGCAAAGAGGGTTGGAGTGGATTTTCATGGTTAGCTTTCAAAGACATTTGGGCTTTTGCTAGGCTGTCCCTGTCCTCATGTATGTTCTTTTGCCTAGAGATGTGGTACGTTATGAGTCTCAGCATTCTTGCCGGGCAACTTGAAAATGCAGTGATTGCTCTTGGTTCCTTTTCTATATGCTTGAACTTTCAGAGCTGGGAAGTCATGATTTTGACAGGAATAAATGCGGCTATAAGCATTCGAGTCTCGAATGAACTAGGGATGGGGCATCCCAGAGCTGCCAAATACTCCATATGTGCTGCAGTCGTACAATCCCTCATCGTTGGGATCGTGTCTATGACTTTTGTCTTCATAAGTAGAGACTACATTGCCAGTGTTTTCACAGACAGCAAAGTCATCCAGCAAGCTGTTGCTCGTTTAGCATACTTTGTTGGTATAACCATGCTTCTTGCTAGTGTTGCACAAGTTTTAACAGGTGTTGCTATTGGAAGTGGATGGCAAGTGATGGTAGCTTATATAAATTTGGCTGCTTATTACCTATTTGGTCTCCCACTTGCAATCTTTCTTGGATTTAAAGCCAATTTGGGTTCAATGGGACTATATGGTGGCATGATAAGTGGAAGTGCTCTTCAGATCTTATTCCTATTGATTATGACTTCCAGAACCAACTGGGACAAGGAGGTCGAGCAGACGACTAAGCGCATAAAGAAATGGGGGAGCAAGGAAATAAGAACTGAGAAGATAGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

491

Amino Acids

53.74

Weight (kDa)

8.39

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	46 - 206	1.1e-30	MatE
MatE	PF01554	267 - 427	3e-21	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
AasI	GACNNNNNNGTC	2 cut(s)	1112, 1400
AciI	CCGC	1 cut(s)	947
AclWI	GGATC	3 cut(s)	569, 581, 1055
AcsI	RAATTY	1 cut(s)	1240
AcuI	CTGAAG	1 cut(s)	1334
AfaI	GTAC	3 cut(s)	630, 827, 1029
AfeI	AGCGCT	1 cut(s)	359
AgsI	TTSAA	5 cut(s)	542, 760, 863, 904, 1311
AjuI	GAANNNNNNNTTGG	4 cut(s)	522, 554, 675, 707
Alw21I	GWGCWC	1 cut(s)	1348
Alw26I	GTCTC	5 cut(s)	101, 842, 970, 1074, 1271
AlwI	GGATC	3 cut(s)	569, 581, 1055
Aor51HI	AGCGCT	1 cut(s)	359
AoxI	GGCC	2 cut(s)	325, 439
ApeKI	GCWGC	6 cut(s)	131, 355, 653, 998, 1019, 1247
ApoI	RAATTY	1 cut(s)	1240
AspLEI	GCGC	2 cut(s)	360, 1422
AsuC2I	CCSGG	1 cut(s)	853
AsuHPI	GGTGA	4 cut(s)	36, 79, 172, 655
BbsI	GAAGAC	2 cut(s)	77, 1060
Bbv12I	GWGCWC	1 cut(s)	1348
BbvI	GCAGC	6 cut(s)	143, 367, 665, 985, 1006, 1234
BccI	CCATC	5 cut(s)	194, 386, 976, 1209, 1219
BcnI	CCSGG	1 cut(s)	853
BcoDI	GTCTC	5 cut(s)	101, 842, 970, 1074, 1271
BfaI	CTAG	5 cut(s)	590, 780, 815, 977, 1173
BfmI	CTRYAG	1 cut(s)	1020
BfoI	RGCGCY	1 cut(s)	361
BglII	AGATCT	2 cut(s)	208, 1353
BisI	GCNGC	7 cut(s)	132, 356, 654, 948, 999, 1020, 1248
BlpI	GCTNAGC	1 cut(s)	29
BlsI	GCNGC	7 cut(s)	133, 357, 655, 949, 1000, 1021, 1249
Bme1390I	CCNGG	1 cut(s)	853
BmiI	GGNNCC	2 cut(s)	51, 886
BmrFI	CCNGG	1 cut(s)	853
BmrI	ACTGGG	1 cut(s)	1399
BmsI	GCATC	3 cut(s)	42, 354, 997
BmuI	ACTGGG	1 cut(s)	1399
BoxI	GACNNNNGTC	1 cut(s)	1064
BpiI	GAAGAC	2 cut(s)	77, 1060
Bpu1102I	GCTNAGC	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	853
BsaI	GGTCTC	1 cut(s)	1271
BsaWI	WCCGGW	3 cut(s)	46, 64, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse1I	ACTGG	3 cut(s)	172, 1092, 1394
Bse3DI	GCAATG	1 cut(s)	1086
BseGI	GGATG	6 cut(s)	10, 168, 987, 988, 1116, 1220
BseMI	GCAATG	1 cut(s)	1086
BseMII	CTCAG	6 cut(s)	20, 450, 509, 560, 853, 1446
BseNI	ACTGG	3 cut(s)	172, 1092, 1394
BseXI	GCAGC	6 cut(s)	143, 367, 665, 985, 1006, 1234
BseYI	CCCAGC	2 cut(s)	636, 915
BsgI	GTGCAG	2 cut(s)	342, 672
BshFI	GGCC	2 cut(s)	327, 441
BsiHKAI	GWGCWC	1 cut(s)	1348
BsiSI	CCGG	4 cut(s)	47, 65, 137, 852
BslFI	GGGAC	3 cut(s)	772, 1329, 1406
BsmAI	GTCTC	5 cut(s)	101, 842, 970, 1074, 1271
BsmFI	GGGAC	3 cut(s)	772, 1329, 1406
BsmI	GAATGC	2 cut(s)	843, 957
BsnI	GGCC	2 cut(s)	327, 441
Bso31I	GGTCTC	1 cut(s)	1271
Bsp1286I	GDGCHC	1 cut(s)	1348
Bsp143I	GATC	5 cut(s)	208, 561, 573, 1047, 1353
Bsp1720I	GCTNAGC	1 cut(s)	29
BspACI	CCGC	1 cut(s)	947
BspANI	GGCC	2 cut(s)	327, 441
BspCNI	CTCAG	6 cut(s)	21, 451, 508, 559, 852, 1447
BspHI	TCATGA	1 cut(s)	924
BspLI	GGNNCC	2 cut(s)	51, 886
BspMAI	CTGCAG	1 cut(s)	1024
BspPI	GGATC	3 cut(s)	569, 581, 1055
BspQI	GCTCTTC	1 cut(s)	1353
BspTNI	GGTCTC	1 cut(s)	1271
BsrDI	GCAATG	1 cut(s)	1086
BsrI	ACTGG	3 cut(s)	172, 1092, 1394
BssMI	GATC	5 cut(s)	208, 561, 573, 1047, 1353
Bst4CI	ACNGT	2 cut(s)	112, 452
Bst6I	CTCTTC	2 cut(s)	623, 1353
BstAPI	GCANNNNNTGC	3 cut(s)	320, 659, 875
BstC8I	GCNNGC	2 cut(s)	325, 1125
BstDEI	CTNAG	7 cut(s)	29, 459, 495, 546, 839, 1416, 1455
BstF5I	GGATG	6 cut(s)	10, 168, 987, 988, 1116, 1220
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	2 cut(s)	360, 1422
BstKTI	GATC	5 cut(s)	211, 564, 576, 1050, 1356
BstMAI	GTCTC	5 cut(s)	101, 842, 970, 1074, 1271
BstMBI	GATC	5 cut(s)	208, 561, 573, 1047, 1353
BstMWI	GCNNNNNNNGC	8 cut(s)	140, 320, 464, 633, 659, 875, 1139, 1178
BstNSI	RCATGY	1 cut(s)	91
BstPAI	GACNNNNGTC	1 cut(s)	1064
BstSCI	CCNGG	1 cut(s)	851
BstSFI	CTRYAG	1 cut(s)	1020
BstV1I	GCAGC	6 cut(s)	143, 367, 665, 985, 1006, 1234
BstV2I	GAAGAC	2 cut(s)	77, 1060
BstX2I	RGATCY	3 cut(s)	208, 573, 1353
BstYI	RGATCY	3 cut(s)	208, 573, 1353
BsuRI	GGCC	2 cut(s)	327, 441
BtsCI	GGATG	6 cut(s)	10, 168, 987, 988, 1116, 1220
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	2 cut(s)	876, 1099
Cac8I	GCNNGC	2 cut(s)	325, 1125
CciI	TCATGA	1 cut(s)	924
CfoI	GCGC	2 cut(s)	360, 1422
Csp6I	GTAC	3 cut(s)	629, 826, 1028
CviAII	CATG	7 cut(s)	88, 570, 747, 798, 925, 1162, 1330
CviQI	GTAC	3 cut(s)	629, 826, 1028
DdeI	CTNAG	7 cut(s)	29, 459, 495, 546, 839, 1416, 1455
DpnI	GATC	5 cut(s)	210, 563, 575, 1049, 1355
DpnII	GATC	5 cut(s)	208, 561, 573, 1047, 1353
DraI	TTTAAA	1 cut(s)	1294
DrdI	GACNNNNNNGTC	2 cut(s)	1112, 1400
DseDI	GACNNNNNNGTC	2 cut(s)	1112, 1400
Eam1104I	CTCTTC	2 cut(s)	623, 1353
EarI	CTCTTC	2 cut(s)	623, 1353
Eco31I	GGTCTC	1 cut(s)	1271
Eco47III	AGCGCT	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	1334
FaeI	CATG	7 cut(s)	91, 573, 750, 801, 928, 1165, 1333
FaqI	GGGAC	3 cut(s)	772, 1329, 1406
FatI	CATG	7 cut(s)	87, 569, 746, 797, 924, 1161, 1329
FauNDI	CATATG	2 cut(s)	316, 1013
Fnu4HI	GCNGC	7 cut(s)	132, 356, 654, 948, 999, 1020, 1248
FokI	GGATG	6 cut(s)	17, 155, 975, 994, 1103, 1227
Fsp4HI	GCNGC	7 cut(s)	132, 356, 654, 948, 999, 1020, 1248
FspBI	CTAG	5 cut(s)	590, 780, 815, 977, 1173
GlaI	GCGC	2 cut(s)	359, 1421
GluI	GCNGC	7 cut(s)	132, 356, 654, 948, 999, 1020, 1248
GsaI	CCCAGC	2 cut(s)	640, 919
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	2 cut(s)	327, 441
HapII	CCGG	4 cut(s)	47, 65, 137, 852
HhaI	GCGC	2 cut(s)	360, 1422
Hin1II	CATG	7 cut(s)	91, 573, 750, 801, 928, 1165, 1333
Hin6I	GCGC	2 cut(s)	358, 1420
HinP1I	GCGC	2 cut(s)	358, 1420
HinfI	GANTC	4 cut(s)	151, 335, 835, 963
HpaII	CCGG	4 cut(s)	47, 65, 137, 852
HphI	GGTGA	4 cut(s)	36, 79, 172, 655
Hpy188I	TCNGA	6 cut(s)	197, 206, 498, 549, 912, 1353
Hpy188III	TCNNGA	6 cut(s)	80, 148, 212, 925, 967, 1380
Hpy99I	CGWCG	1 cut(s)	403
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	2 cut(s)	112, 452
HpyCH4IV	ACGT	1 cut(s)	828
HpyF10VI	GCNNNNNNNGC	8 cut(s)	140, 320, 464, 633, 659, 875, 1139, 1178
HpyF3I	CTNAG	7 cut(s)	29, 459, 495, 546, 839, 1416, 1455
HpySE526I	ACGT	1 cut(s)	828
Hsp92II	CATG	7 cut(s)	91, 573, 750, 801, 928, 1165, 1333
HspAI	GCGC	2 cut(s)	358, 1420
Kzo9I	GATC	5 cut(s)	208, 561, 573, 1047, 1353
LguI	GCTCTTC	1 cut(s)	1353
LmnI	GCTCC	4 cut(s)	67, 139, 365, 1437
Lsp1109I	GCAGC	6 cut(s)	143, 367, 665, 985, 1006, 1234
LweI	GCATC	3 cut(s)	42, 354, 997
MaeI	CTAG	5 cut(s)	590, 780, 815, 977, 1173
MaeII	ACGT	1 cut(s)	828
MaeIII	GTNAC	2 cut(s)	178, 592
MalI	GATC	5 cut(s)	210, 563, 575, 1049, 1355
MboI	GATC	5 cut(s)	208, 561, 573, 1047, 1353
MboII	GAAGA	7 cut(s)	82, 181, 530, 610, 1060, 1340, 1471
MflI	RGATCY	3 cut(s)	208, 573, 1353
MhlI	GDGCHC	1 cut(s)	1348
MluCI	AATT	2 cut(s)	1240, 1300
MlyI	GAGTC	3 cut(s)	145, 844, 972
MmeI	TCCRAC	2 cut(s)	80, 713
MnlI	CCTC	8 cut(s)	76, 176, 401, 504, 721, 805, 1046, 1393
MseI	TTAA	2 cut(s)	1190, 1293
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	4 cut(s)	47, 65, 137, 852
MspR9I	CCNGG	1 cut(s)	853
Mva1269I	GAATGC	2 cut(s)	843, 957
MwoI	GCNNNNNNNGC	8 cut(s)	140, 320, 464, 633, 659, 875, 1139, 1178
NciI	CCSGG	1 cut(s)	853
NdeI	CATATG	2 cut(s)	316, 1013
NdeII	GATC	5 cut(s)	208, 561, 573, 1047, 1353
NlaIII	CATG	7 cut(s)	91, 573, 750, 801, 928, 1165, 1333
NlaIV	GGNNCC	2 cut(s)	51, 886
NmeAIII	GCCGAG	1 cut(s)	612
NmuCI	GTSAC	2 cut(s)	178, 592
NspI	RCATGY	1 cut(s)	91
PagI	TCATGA	1 cut(s)	924
PciSI	GCTCTTC	1 cut(s)	1353
PcsI	WCGNNNNNNNCGW	1 cut(s)	1047
PctI	GAATGC	2 cut(s)	843, 957
PfeI	GAWTC	1 cut(s)	335
PkrI	GCNGC	7 cut(s)	133, 357, 655, 949, 1000, 1021, 1249
PleI	GAGTC	3 cut(s)	145, 843, 971
PpsI	GAGTC	3 cut(s)	145, 843, 971
PshAI	GACNNNNGTC	1 cut(s)	1064
PsiI	TTATAA	1 cut(s)	666
PspFI	CCCAGC	2 cut(s)	636, 915
PspN4I	GGNNCC	2 cut(s)	51, 886
PstI	CTGCAG	1 cut(s)	1024
PsuI	RGATCY	3 cut(s)	208, 573, 1353
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	3 cut(s)	630, 827, 1029
RsaNI	GTAC	3 cut(s)	629, 826, 1028
RseI	CAYNNNNRTG	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	1353
SaqAI	TTAA	2 cut(s)	1190, 1293
SatI	GCNGC	7 cut(s)	132, 356, 654, 948, 999, 1020, 1248
Sau3AI	GATC	5 cut(s)	208, 561, 573, 1047, 1353
SchI	GAGTC	3 cut(s)	145, 844, 972
ScrFI	CCNGG	1 cut(s)	853
SduI	GDGCHC	1 cut(s)	1348
SfaNI	GCATC	3 cut(s)	42, 354, 997
SfcI	CTRYAG	1 cut(s)	1020
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	2 cut(s)	1240, 1300
SsiI	CCGC	1 cut(s)	947
SspI	AATATT	1 cut(s)	476
SspMI	CTAG	5 cut(s)	590, 780, 815, 977, 1173
StyD4I	CCNGG	1 cut(s)	851
TaaI	ACNGT	2 cut(s)	112, 452
TaiI	ACGT	1 cut(s)	831
TaqI	TCGA	4 cut(s)	401, 961, 968, 1404
TasI	AATT	2 cut(s)	1240, 1300
TauI	GCSGC	1 cut(s)	950
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	2 cut(s)	1190, 1293
Tru9I	TTAA	2 cut(s)	1190, 1293
TscAI	CASTG	2 cut(s)	876, 1099
TseFI	GTSAC	2 cut(s)	178, 592
TseI	GCWGC	6 cut(s)	131, 355, 653, 998, 1019, 1247
Tsp45I	GTSAC	2 cut(s)	178, 592
TspDTI	ATGAA	5 cut(s)	181, 610, 735, 987, 1060
TspRI	CASTG	2 cut(s)	876, 1099
XapI	RAATTY	1 cut(s)	1240
XceI	RCATGY	1 cut(s)	91
XspI	CTAG	5 cut(s)	590, 780, 815, 977, 1173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.