FvH4_7g30072

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
21980720 .. 21984312
3593 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30072.t1

Sequence Viewer

Length: 1476 bp
ATGGATGATACGCAACGTTCTCCCTTGCTGAGCATCAAGGCTTCACTGGAACCCGACTATGCTCCGGTGAAGACCTTTCAGGAGGGCATGTCTGTATGTTGGAAGGAGTCTGTGAAGCTGTGGAAAGTTGCAGCTCCGGTGGCTTTCGCGGCTCTCTTTCAGTACCTCATCCAGTCCATCACCACCATTTTCATCGGACATCTCGGAGATCTTGAGCTCTCTGCTATTTCCCTCGCTCATAATGTCATCAACGCCATCGCTGTTGGCTTCCTGAGAGGTATGGCATATGCACTTGGAACGCTTTGTGGACAAGCTTATGGTGCAGGCCAAATCGACTCACTTGGTATCTATATGCAGCGCTCATGCATCATCCTAACCATTGCTTGTTTTCTCCTCTTATCACTTTACATTTTTGCCACTCCATTCCTCAAGATTTTAGGCCAACAAGAAAGTCTAGCCGAGTTTGCTGGAAACTACAGTCTGTTGATAATCCCTCAGATGTTCTCCTTTGCCATCAATTTGCCCACCCAAAAGTTCCTTCAGGCTCAGAGCAAGGTCGGCGTCATTACATGGATCTCCTTTGTGGCTCTAGTCACACACACAGGACTCCTTTATCTTTTCATTAGCGTACTCGGCTGGGGGGTGAATGGTGCAGCTGTAGCTTATAACATCACATACTGGGAAGTTGCAGTTGGTCAGTTTGTGTATGTTGCATTTTTGTGCAAGGAAGGTTGGAATGGATTTTCATGGTTAGCATTCAAAGACATCTGGGATTTTGCTAAGCTGTCTCTTGCCTCATGTATGATGTTTTGCCTAGAGATGTGGTATACTATGAGTATGAACATTTTCGCCGGTCAACTTGAGAATGCAGTGATTGCCCTCGGTTCCTTCTCAATATGCTTGAACTTTCAAAGTTGGGAAATCATGATTTTGGTTGGAGTGAGTACTGCTATAAGCATTCGAGTCTCAAATGAACTTGGAATGGGGCACCCAAGAGCGGCCAAATACTCCATATGTGTTGCAGTCTTGCTATCTCTCGTCGTTGGTCTTGTGTCTATGACTTCTATCTTCTTAAGTAGAGACTACATTGCCAATGTTTTCACAGACAGCAAAGTAATGCAACAAGCTGTTGCTCATTTAGCATACTTTCTCGGCGCAGCCATGCTTCTTAATAGTGTTGCAGAAGTTTTGACAGGGGTTGCAGTTGGAGGCGGATGGCAAGTGATGGTAGCTTATATAAATTTGGCTGCTTATTATTTATTTGGTCTCCCATTGGCTATATTTCTTGGATTTAAAGCAAACTTGGGTCCAATGGGACTATATGGTGGCATAATAAGTGGAAGTGCTTTACAGATCTTATTCTTATTGATTATGACTTCCAGAACCAACTGGGACACTGAGGTGGAGCAAACGACAAAGCGCATAAAGAAATGGGGGAGCAAAGAAATAAGAACTGAGAAGAAGATGGATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

492

Amino Acids

53.89

Weight (kDa)

7.49

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 46 - 206 7e-30 MatE
MatE PF01554 266 - 427 6.4e-24 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 666
AccB1I GGYRCC 1 cut(s) 987
AccBSI CCGCTC 1 cut(s) 998
AccI GTMKAC 1 cut(s) 827
AccII CGCG 1 cut(s) 149
AciI CCGC 3 cut(s) 149, 998, 1212
AclI AACGTT 1 cut(s) 16
AclWI GGATC 1 cut(s) 581
AcoI YGGCCR 1 cut(s) 999
AcsI RAATTY 1 cut(s) 1240
AcuI CTGAAG 1 cut(s) 524
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 3 cut(s) 164, 630, 946
AfeI AGCGCT 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 997
AflII CTTAAG 1 cut(s) 1072
AgsI TTSAA 3 cut(s) 760, 904, 911
AjuI GAANNNNNNNTTGG 4 cut(s) 522, 554, 675, 707
AleI CACNNNNGTG 1 cut(s) 1400
AluBI AGCT 9 cut(s) 118, 134, 217, 314, 656, 662, 784, 1127, 1232
AluI AGCT 9 cut(s) 118, 134, 217, 314, 656, 662, 784, 1127, 1232
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 4 cut(s) 792, 970, 1074, 1271
AlwI GGATC 1 cut(s) 581
Aor51HI AGCGCT 1 cut(s) 359
AoxI GGCC 3 cut(s) 325, 439, 999
ApeKI GCWGC 5 cut(s) 131, 355, 653, 1157, 1247
ApoI RAATTY 1 cut(s) 1240
Asp700I GAANNNNTTC 1 cut(s) 845
AspLEI GCGC 3 cut(s) 360, 1157, 1422
AspS9I GGNCC 1 cut(s) 1307
AsuHPI GGTGA 3 cut(s) 79, 172, 655
AvaII GGWCC 1 cut(s) 1307
BaeGI GKGCMC 1 cut(s) 990
BanI GGYRCC 1 cut(s) 987
BanII GRGCYC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 77
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 5 cut(s) 143, 367, 665, 1169, 1234
BccI CCATC 6 cut(s) 185, 263, 521, 1209, 1219, 1459
BcoDI GTCTC 4 cut(s) 792, 970, 1074, 1271
BfaI CTAG 3 cut(s) 455, 590, 815
BfmI CTRYAG 2 cut(s) 475, 657
BfoI RGCGCY 1 cut(s) 361
BfrI CTTAAG 1 cut(s) 1072
BglII AGATCT 2 cut(s) 208, 1353
BisI GCNGC 7 cut(s) 132, 150, 356, 654, 999, 1158, 1248
BlpI GCTNAGC 2 cut(s) 29, 780
BlsI GCNGC 7 cut(s) 133, 151, 357, 655, 1000, 1159, 1249
BmcAI AGTACT 1 cut(s) 946
Bme18I GGWCC 1 cut(s) 1307
BmgT120I GGNCC 1 cut(s) 1307
BmiI GGNNCC 4 cut(s) 51, 886, 989, 1308
BmrI ACTGGG 2 cut(s) 688, 1399
BmsI GCATC 2 cut(s) 42, 375
BmuI ACTGGG 2 cut(s) 688, 1399
BpiI GAAGAC 1 cut(s) 77
Bpu1102I GCTNAGC 2 cut(s) 29, 780
BpuEI CTTGAG 3 cut(s) 233, 413, 881
BsaHI GRCGYC 1 cut(s) 561
BsaI GGTCTC 1 cut(s) 1271
BsaJI CCNNGG 1 cut(s) 880
BsaWI WCCGGW 2 cut(s) 64, 136
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 1 cut(s) 997
Bse118I RCCGGY 1 cut(s) 851
Bse1I ACTGG 4 cut(s) 51, 172, 683, 1394
Bse3DI GCAATG 2 cut(s) 378, 1086
BseDI CCNNGG 1 cut(s) 880
BseGI GGATG 4 cut(s) 10, 168, 369, 1220
BseLI CCNNNNNNNGG 1 cut(s) 997
BseMI GCAATG 2 cut(s) 378, 1086
BseMII CTCAG 6 cut(s) 20, 263, 509, 560, 1389, 1446
BseNI ACTGG 4 cut(s) 51, 172, 683, 1394
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 990
BseXI GCAGC 5 cut(s) 143, 367, 665, 1169, 1234
BseYI CCCAGC 1 cut(s) 636
BsgI GTGCAG 2 cut(s) 342, 672
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 3 cut(s) 327, 441, 1001
BshNI GGYRCC 1 cut(s) 987
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 3 cut(s) 65, 137, 852
BslFI GGGAC 2 cut(s) 1329, 1406
BslI CCNNNNNNNGG 1 cut(s) 997
BsmAI GTCTC 4 cut(s) 792, 970, 1074, 1271
BsmFI GGGAC 2 cut(s) 1329, 1406
BsmI GAATGC 3 cut(s) 755, 871, 957
BsnI GGCC 3 cut(s) 327, 441, 1001
Bso31I GGTCTC 1 cut(s) 1271
Bsp1286I GDGCHC 2 cut(s) 219, 990
Bsp143I GATC 3 cut(s) 208, 573, 1353
Bsp1720I GCTNAGC 2 cut(s) 29, 780
BspACI CCGC 3 cut(s) 149, 998, 1212
BspANI GGCC 3 cut(s) 327, 441, 1001
BspCNI CTCAG 6 cut(s) 21, 264, 508, 559, 1390, 1447
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 4 cut(s) 51, 886, 989, 1308
BspPI GGATC 1 cut(s) 581
BspT107I GGYRCC 1 cut(s) 987
BspTI CTTAAG 1 cut(s) 1072
BspTNI GGTCTC 1 cut(s) 1271
BsrBI CCGCTC 1 cut(s) 998
BsrDI GCAATG 2 cut(s) 378, 1086
BsrFI RCCGGY 1 cut(s) 851
BsrI ACTGG 4 cut(s) 51, 172, 683, 1394
BssAI RCCGGY 1 cut(s) 851
BssECI CCNNGG 1 cut(s) 880
BssMI GATC 3 cut(s) 208, 573, 1353
BssNAI GTATAC 1 cut(s) 828
BssNI GRCGYC 1 cut(s) 561
Bst1107I GTATAC 1 cut(s) 828
Bst4CI ACNGT 1 cut(s) 479
BstACI GRCGYC 1 cut(s) 561
BstAFI CTTAAG 1 cut(s) 1072
BstAPI GCANNNNNTGC 1 cut(s) 875
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 7 cut(s) 29, 272, 495, 546, 780, 1398, 1455
BstF5I GGATG 4 cut(s) 10, 168, 369, 1220
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 3 cut(s) 360, 1157, 1422
BstKTI GATC 3 cut(s) 211, 576, 1356
BstMAI GTCTC 4 cut(s) 792, 970, 1074, 1271
BstMBI GATC 3 cut(s) 208, 573, 1353
BstMWI GCNNNNNNNGC 9 cut(s) 140, 149, 320, 464, 558, 633, 659, 875, 1139
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 2 cut(s) 475, 657
BstSLI GKGCMC 1 cut(s) 990
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 5 cut(s) 143, 367, 665, 1169, 1234
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 3 cut(s) 208, 573, 1353
BstYI RGATCY 3 cut(s) 208, 573, 1353
BstZ17I GTATAC 1 cut(s) 828
BsuRI GGCC 3 cut(s) 327, 441, 1001
BtgZI GCGATG 1 cut(s) 241
BtsCI GGATG 4 cut(s) 10, 168, 369, 1220
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 3 cut(s) 44, 876, 1395
Cac8I GCNNGC 1 cut(s) 325
CciI TCATGA 1 cut(s) 924
CfoI GCGC 3 cut(s) 360, 1157, 1422
Cfr10I RCCGGY 1 cut(s) 851
Cfr13I GGNCC 1 cut(s) 1307
CseI GACGC 1 cut(s) 550
Csp6I GTAC 3 cut(s) 163, 629, 945
CviAII CATG 7 cut(s) 88, 363, 570, 747, 798, 925, 1162
CviQI GTAC 3 cut(s) 163, 629, 945
DdeI CTNAG 7 cut(s) 29, 272, 495, 546, 780, 1398, 1455
DpnI GATC 3 cut(s) 210, 575, 1355
DpnII GATC 3 cut(s) 208, 573, 1353
DraI TTTAAA 1 cut(s) 1294
EaeI YGGCCR 1 cut(s) 999
EciI GGCGGA 1 cut(s) 1227
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 1271
Eco47I GGWCC 1 cut(s) 1307
Eco47III AGCGCT 1 cut(s) 359
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 524
EcoICRI GAGCTC 1 cut(s) 217
EcoT22I ATGCAT 1 cut(s) 368
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 7 cut(s) 91, 366, 573, 750, 801, 928, 1165
FaqI GGGAC 2 cut(s) 1329, 1406
FatI CATG 7 cut(s) 87, 362, 569, 746, 797, 924, 1161
FauNDI CATATG 2 cut(s) 286, 1013
FblI GTMKAC 1 cut(s) 827
Fnu4HI GCNGC 7 cut(s) 132, 150, 356, 654, 999, 1158, 1248
FokI GGATG 4 cut(s) 17, 155, 356, 1227
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 7 cut(s) 132, 150, 356, 654, 999, 1158, 1248
FspBI CTAG 3 cut(s) 455, 590, 815
GlaI GCGC 3 cut(s) 359, 1156, 1421
GluI GCNGC 7 cut(s) 132, 150, 356, 654, 999, 1158, 1248
GsaI CCCAGC 1 cut(s) 640
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 3 cut(s) 327, 441, 1001
HapII CCGG 3 cut(s) 65, 137, 852
HgaI GACGC 1 cut(s) 550
HhaI GCGC 3 cut(s) 360, 1157, 1422
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 7 cut(s) 91, 366, 573, 750, 801, 928, 1165
Hin6I GCGC 3 cut(s) 358, 1155, 1420
HinP1I GCGC 3 cut(s) 358, 1155, 1420
HincII GTYRAC 1 cut(s) 857
HindII GTYRAC 1 cut(s) 857
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 4 cut(s) 107, 335, 606, 963
HpaII CCGG 3 cut(s) 65, 137, 852
HphI GGTGA 3 cut(s) 79, 172, 655
Hpy166II GTNNAC 3 cut(s) 308, 828, 857
Hpy188I TCNGA 4 cut(s) 197, 206, 498, 549
Hpy188III TCNNGA 6 cut(s) 80, 212, 271, 430, 925, 1380
Hpy8I GTNNAC 3 cut(s) 308, 828, 857
Hpy99I CGWCG 1 cut(s) 1043
HpyAV CCTTC 4 cut(s) 97, 548, 722, 898
HpyCH4III ACNGT 1 cut(s) 479
HpyCH4IV ACGT 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 9 cut(s) 140, 149, 320, 464, 558, 633, 659, 875, 1139
HpyF3I CTNAG 7 cut(s) 29, 272, 495, 546, 780, 1398, 1455
HpySE526I ACGT 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 7 cut(s) 91, 366, 573, 750, 801, 928, 1165
HspAI GCGC 3 cut(s) 358, 1155, 1420
Kzo9I GATC 3 cut(s) 208, 573, 1353
LmnI GCTCC 4 cut(s) 67, 139, 1405, 1437
Lsp1109I GCAGC 5 cut(s) 143, 367, 665, 1169, 1234
LweI GCATC 2 cut(s) 42, 375
MaeI CTAG 3 cut(s) 455, 590, 815
MaeII ACGT 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 592
MalI GATC 3 cut(s) 210, 575, 1355
MbiI CCGCTC 1 cut(s) 998
MboI GATC 3 cut(s) 208, 573, 1353
MboII GAAGA 4 cut(s) 82, 1060, 1471, 1474
MflI RGATCY 3 cut(s) 208, 573, 1353
MhlI GDGCHC 2 cut(s) 219, 990
MluCI AATT 2 cut(s) 517, 1240
MlyI GAGTC 4 cut(s) 116, 329, 600, 972
MmeI TCCRAC 4 cut(s) 80, 713, 916, 1186
Mph1103I ATGCAT 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 845
MseI TTAA 3 cut(s) 1073, 1170, 1293
MslI CAYNNNNRTG 2 cut(s) 718, 1400
MspA1I CMGCKG 1 cut(s) 656
MspCI CTTAAG 1 cut(s) 1072
MspI CCGG 3 cut(s) 65, 137, 852
Mva1269I GAATGC 3 cut(s) 755, 871, 957
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 9 cut(s) 140, 149, 320, 464, 558, 633, 659, 875, 1139
NdeI CATATG 2 cut(s) 286, 1013
NdeII GATC 3 cut(s) 208, 573, 1353
NlaIII CATG 7 cut(s) 91, 366, 573, 750, 801, 928, 1165
NlaIV GGNNCC 4 cut(s) 51, 886, 989, 1308
NmeAIII GCCGAG 3 cut(s) 484, 612, 1131
NmuCI GTSAC 1 cut(s) 592
NsiI ATGCAT 1 cut(s) 368
NspI RCATGY 1 cut(s) 91
OliI CACNNNNGTG 1 cut(s) 1400
PagI TCATGA 1 cut(s) 924
PctI GAATGC 3 cut(s) 755, 871, 957
PdmI GAANNNNTTC 1 cut(s) 845
PkrI GCNGC 7 cut(s) 133, 151, 357, 655, 1000, 1159, 1249
PleI GAGTC 4 cut(s) 115, 329, 600, 971
PpsI GAGTC 4 cut(s) 115, 329, 600, 971
PsiI TTATAA 1 cut(s) 666
Psp124BI GAGCTC 1 cut(s) 219
Psp1406I AACGTT 1 cut(s) 16
PspFI CCCAGC 1 cut(s) 636
PspN4I GGNNCC 4 cut(s) 51, 886, 989, 1308
PspPI GGNCC 1 cut(s) 1307
PsuI RGATCY 3 cut(s) 208, 573, 1353
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 3 cut(s) 164, 630, 946
RsaNI GTAC 3 cut(s) 163, 629, 945
RseI CAYNNNNRTG 2 cut(s) 718, 1400
SacI GAGCTC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 1073, 1170, 1293
SatI GCNGC 7 cut(s) 132, 150, 356, 654, 999, 1158, 1248
Sau3AI GATC 3 cut(s) 208, 573, 1353
Sau96I GGNCC 1 cut(s) 1307
ScaI AGTACT 1 cut(s) 946
SchI GAGTC 4 cut(s) 116, 329, 600, 972
SduI GDGCHC 2 cut(s) 219, 990
SfaNI GCATC 2 cut(s) 42, 375
SfcI CTRYAG 2 cut(s) 475, 657
SinI GGWCC 1 cut(s) 1307
SmiMI CAYNNNNRTG 2 cut(s) 718, 1400
SmlI CTYRAG 4 cut(s) 212, 428, 860, 1072
SmoI CTYRAG 4 cut(s) 212, 428, 860, 1072
Sse9I AATT 2 cut(s) 517, 1240
SsiI CCGC 3 cut(s) 149, 998, 1212
SspMI CTAG 3 cut(s) 455, 590, 815
SstI GAGCTC 1 cut(s) 219
TaaI ACNGT 1 cut(s) 479
TaiI ACGT 1 cut(s) 19
TaqI TCGA 2 cut(s) 333, 961
TasI AATT 2 cut(s) 517, 1240
TatI WGTACW 1 cut(s) 944
TauI GCSGC 2 cut(s) 152, 1001
Tru1I TTAA 3 cut(s) 1073, 1170, 1293
Tru9I TTAA 3 cut(s) 1073, 1170, 1293
TscAI CASTG 3 cut(s) 51, 876, 1402
TseFI GTSAC 1 cut(s) 592
TseI GCWGC 5 cut(s) 131, 355, 653, 1157, 1247
Tsp45I GTSAC 1 cut(s) 592
TspDTI ATGAA 5 cut(s) 181, 610, 735, 854, 987
TspRI CASTG 3 cut(s) 51, 876, 1402
Vha464I CTTAAG 1 cut(s) 1072
VpaK11BI GGWCC 1 cut(s) 1307
XapI RAATTY 1 cut(s) 1240
XceI RCATGY 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 827
XmnI GAANNNNTTC 1 cut(s) 845
XspI CTAG 3 cut(s) 455, 590, 815
ZrmI AGTACT 1 cut(s) 946
Zsp2I ATGCAT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.