Rh1AG425000

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002046
Physical Location & Seq
Forward (+)
65413578 .. 65414769
1192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG425000.1

Sequence Viewer

Length: 681 bp
ATGTTCTCCTTTGCCATCAATTTGCCCACCCAAAGGTTCCTTCAGGCTCAGAGCAAGGGAGTGAATGGTGCAGCTGTAGCTTATAATATCACATTTTGGGAAGTTGCAGTTGGTCAATTTGTGTATGCTGTGTTTTTGTGCAAGGAGAGTTGGAATGGATTTTCGTGGTTGGCGTTTAAAGATACTTGGGCTTTTGCTAGGCTGTCCGTTGCCTCATTCATTGCTCTTGGTTCCTTTTCTATATGCTCAAACATTCACAGTGGGGAAATCATGTTCTTTGCTGGAATAAATTCTGCTATGAGCATTCGAGTCTCAAATGAACTTGGGATGGGGCACCCAAGAGCGGCCAAATACTCCATCTGCGTTGCAGTCTTGCAATCTCTCCTCATTGGGATTGTGTCTATGATTTTTATCTTCATAAGTAGAGACTACATTGCCATCGTTTTCAAGAATAGCAAAGTTATGCAACAAGCTGTTGCTCGTTTAGCATTCTTTCTCGGTGTAACAATGCTTCTCAATAGCGTACCTCAAGTGTTAACAGGTGTTGCTGTTGGAAGTGGATGGCAAGAGATGGTGGCTTATATAAATTTGGCTGCTTATTATTTATTATTTGGGCTCCCACTAGCAATCTTTCTTGCTTTAAAGCAAACTTGGGTCCAATGGGACTTTATGGTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

226

Amino Acids

24.98

Weight (kDa)

9.24

Isoelectric Point (pI)

22.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 55 - 209 4.3e-19 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 333
AccBSI CCGCTC 1 cut(s) 344
AciI CCGC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 2 cut(s) 289, 586
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 1 cut(s) 525
AfiI CCNNNNNNNGG 2 cut(s) 33, 343
AgsI TTSAA 1 cut(s) 448
AjuI GAANNNNNNNTTGG 4 cut(s) 24, 56, 93, 125
AloI GAACNNNNNNTCC 2 cut(s) 257, 289
AluBI AGCT 3 cut(s) 74, 80, 473
AluI AGCT 3 cut(s) 74, 80, 473
Alw26I GTCTC 2 cut(s) 316, 420
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 2 cut(s) 71, 593
ApoI RAATTY 2 cut(s) 289, 586
Asp700I GAANNNNTTC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 655
AvaII GGWCC 1 cut(s) 655
BaeGI GKGCMC 1 cut(s) 336
BanI GGYRCC 1 cut(s) 333
BanII GRGCYC 1 cut(s) 618
BarI GAAGNNNNNNTAC 2 cut(s) 495, 527
BbvI GCAGC 2 cut(s) 83, 580
BccI CCATC 6 cut(s) 23, 322, 365, 446, 555, 565
BcoDI GTCTC 2 cut(s) 316, 420
BfaI CTAG 2 cut(s) 198, 623
BfmI CTRYAG 1 cut(s) 75
BisI GCNGC 3 cut(s) 72, 345, 594
BlsI GCNGC 3 cut(s) 73, 346, 595
Bme18I GGWCC 1 cut(s) 655
BmgT120I GGNCC 1 cut(s) 655
BmiI GGNNCC 5 cut(s) 38, 232, 335, 617, 656
BpuEI CTTGAG 1 cut(s) 513
BsaBI GATNNNNATC 1 cut(s) 410
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 343
Bse3DI GCAATG 2 cut(s) 219, 432
Bse8I GATNNNNATC 1 cut(s) 410
BseGI GGATG 2 cut(s) 333, 566
BseJI GATNNNNATC 1 cut(s) 410
BseLI CCNNNNNNNGG 2 cut(s) 33, 343
BseMI GCAATG 2 cut(s) 219, 432
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 374
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 2 cut(s) 83, 580
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 1 cut(s) 347
BshNI GGYRCC 1 cut(s) 333
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 2 cut(s) 33, 343
BsmAI GTCTC 2 cut(s) 316, 420
BsmFI GGGAC 1 cut(s) 677
BsmI GAATGC 2 cut(s) 303, 488
BsnI GGCC 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 336, 618
BspACI CCGC 1 cut(s) 344
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 5 cut(s) 38, 232, 335, 617, 656
BspT107I GGYRCC 1 cut(s) 333
BsrBI CCGCTC 1 cut(s) 344
BsrDI GCAATG 2 cut(s) 219, 432
Bst4CI ACNGT 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 333, 566
BstMAI GTCTC 2 cut(s) 316, 420
BstMWI GCNNNNNNNGC 2 cut(s) 77, 485
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 83, 580
BsuRI GGCC 1 cut(s) 347
BtsCI GGATG 2 cut(s) 333, 566
BtsIMutI CAGTG 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 655
Csp6I GTAC 1 cut(s) 524
CviAII CATG 1 cut(s) 271
CviQI GTAC 1 cut(s) 524
DdeI CTNAG 1 cut(s) 48
DraI TTTAAA 2 cut(s) 178, 642
EaeI YGGCCR 1 cut(s) 345
Eco24I GRGCYC 1 cut(s) 618
Eco47I GGWCC 1 cut(s) 655
Eco57I CTGAAG 1 cut(s) 26
EcoT38I GRGCYC 1 cut(s) 618
FaeI CATG 1 cut(s) 274
FaqI GGGAC 1 cut(s) 677
FatI CATG 1 cut(s) 270
Fnu4HI GCNGC 3 cut(s) 72, 345, 594
FokI GGATG 2 cut(s) 340, 573
FriOI GRGCYC 1 cut(s) 618
Fsp4HI GCNGC 3 cut(s) 72, 345, 594
FspBI CTAG 2 cut(s) 198, 623
GluI GCNGC 3 cut(s) 72, 345, 594
HaeIII GGCC 1 cut(s) 347
Hin1II CATG 1 cut(s) 274
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HinfI GANTC 1 cut(s) 309
HpaI GTTAAC 1 cut(s) 537
Hpy166II GTNNAC 1 cut(s) 537
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 448
Hpy8I GTNNAC 1 cut(s) 537
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4V TGCA 6 cut(s) 71, 107, 141, 368, 376, 466
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 485
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 1 cut(s) 274
KspAI GTTAAC 1 cut(s) 537
LmnI GCTCC 1 cut(s) 621
LpnPI CCDG 3 cut(s) 29, 267, 525
Lsp1109I GCAGC 2 cut(s) 83, 580
MaeI CTAG 2 cut(s) 198, 623
MaeIII GTNAC 1 cut(s) 502
MbiI CCGCTC 1 cut(s) 344
MboII GAAGA 1 cut(s) 406
MhlI GDGCHC 2 cut(s) 336, 618
MluCI AATT 4 cut(s) 19, 116, 289, 586
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 2 cut(s) 131, 532
MnlI CCTC 3 cut(s) 223, 395, 537
MroXI GAANNNNTTC 1 cut(s) 289
MseI TTAA 3 cut(s) 177, 536, 641
MspA1I CMGCKG 1 cut(s) 74
Mva1269I GAATGC 2 cut(s) 303, 488
MwoI GCNNNNNNNGC 2 cut(s) 77, 485
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 5 cut(s) 38, 232, 335, 617, 656
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PctI GAATGC 2 cut(s) 303, 488
PdmI GAANNNNTTC 1 cut(s) 289
PkrI GCNGC 3 cut(s) 73, 346, 595
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
PsiI TTATAA 1 cut(s) 84
PspN4I GGNNCC 5 cut(s) 38, 232, 335, 617, 656
PspPI GGNCC 1 cut(s) 655
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 525
RsaNI GTAC 1 cut(s) 524
SaqAI TTAA 3 cut(s) 177, 536, 641
SatI GCNGC 3 cut(s) 72, 345, 594
Sau96I GGNCC 1 cut(s) 655
SchI GAGTC 1 cut(s) 318
SduI GDGCHC 2 cut(s) 336, 618
SetI ASST 6 cut(s) 38, 76, 82, 475, 529, 544
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 655
SmlI CTYRAG 1 cut(s) 528
SmoI CTYRAG 1 cut(s) 528
Sse9I AATT 4 cut(s) 19, 116, 289, 586
SsiI CCGC 1 cut(s) 344
SspMI CTAG 2 cut(s) 198, 623
TaaI ACNGT 1 cut(s) 260
TaqI TCGA 1 cut(s) 307
TasI AATT 4 cut(s) 19, 116, 289, 586
TauI GCSGC 1 cut(s) 347
Tru1I TTAA 3 cut(s) 177, 536, 641
Tru9I TTAA 3 cut(s) 177, 536, 641
TscAI CASTG 1 cut(s) 265
TseI GCWGC 2 cut(s) 71, 593
TspDTI ATGAA 3 cut(s) 208, 333, 406
TspGWI ACGGA 1 cut(s) 196
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 655
XapI RAATTY 2 cut(s) 289, 586
XmnI GAANNNNTTC 1 cut(s) 289
XspI CTAG 2 cut(s) 198, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.