MD07G1277100.v1.1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
34239274 .. 34248789
9516 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1277100.v1.1.491

Sequence Viewer

Length: 1467 bp
ATGGAAACGCCATTGCTGACAATCAAAGCAGAGGCGGCAGCAGCTGCTGATTATGCTCCAGTGAGGAGCTTTGGGGAGGCCATGAAGGTCTCCTGGAAAGAGGCGGTGAAGCTCTGGAGGGTTGCAACTCTGGTGGCCTGCACTTCTCTGTTTCAGTACCTGGTTCAGTCCATAACCACCGTTTTCGTCGGTCATCTTGGAGATGTCGAGCTCTCTGCCGTCTCCCTTTCCCTCGGTGTCATTTGCAACATCCCTTTTGGTTTCCTGCTAGGTATGGCAACTGCATTGGGAACCCTTTGTGGGCAAGCATATGGAGCAGGCCAAGTAGGGCAGCTAGGAATCTATATGCAGCGCTCATGGATTGTGTTATTCATCGCCTGTATCATCCTTTCGCCAGTTTTTATTTTCGCCGCTCCGATCCTAAAATTTTTAGGCCAGGAACATGGCATAGCTGATCCTGCTGGAGTATACAGTCTAAAGATAATCCCTCAAATGTTCTCCTATGCCATCAATTTGCCCACTCAGAGGTTCCTCCAGGCCCAGAGCAAGGTGCTCGTGATCACGTTGATTGCATTCGCGGCTCTAATCATACAAACCGGGTTGCTTCATCTCTTCATCAATGTGTTTGGCTTGGGAACAACTGGTGCGGCTGTAGCTTATGACATCACAAACTGGGGAGTTGCAATTGGTCAAGTTGGTTATGTTATGGTCTGCTGCAAAGAGGAGTGGACTGGATTTTCATGGTTGGCGTTTCGAGAGATTTGGGATTTTGCTAAGCTGTCACTTGCCTCTTGTATGATGGTTTGCCTAGATTTATGGTATTCGATGAGTATAAGCATTCTTGCCGGTCTGCTTCCAAATGCAGTCATTTCTGTTGGTTCCTTTTCTATATGCATGAATTTTCAGAATTGGGAAATTATGTTGTTGCTTGGAATAAGTGCTGCTGTAAGCACACGAGTCTCGAACGAACTTGGAAAGGGGCGTCCAAGAGCAGCCAAATACTCCGTCTGTGTTGCAGTCTTGCTAGCTCTCGTCATTGGGTCTTTAGCCATGGTTGCTATCTTCGTAAGCAGAGACTACTTTGCCATGATTTTCACCAGCAGTGGAGATATGCAACTCGCCGTTTCTCGTTTAGTTTACCTTCTTGGTGTAACGATGCTTCTTACCAGTGCTACACAAGTATTAACAGGAGTTGCTATTGGAGGTGGATGGCAAGTGATGGTGGCTTATATAAATTTTGGTAGTTATTATTTGGTTGGGCTCCCATTAGCAATCTTTCTTGGCTTCAAAGCAGATCTGGGAGCTGTGGGACTTTGGGGTGGGATGATGAGTGGAAACGCTCTTCAGATCTTCTTCTTGCTGATTCTGACTTGTAGAACCAACTGGGACAGAGAGGTGGAGCAAACAACAAAGCGCATAAAGAAGTGGAGAAGCAAAGAAACAATAACTGACGAGATATGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

489

Amino Acids

52.9

Weight (kDa)

8.38

Isoelectric Point (pI)

27.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 46 - 198 1.3e-28 MatE
MatE PF01554 264 - 425 6.2e-22 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 413
AccI GTMKAC 1 cut(s) 468
AccII CGCG 1 cut(s) 578
AciI CCGC 5 cut(s) 35, 104, 411, 578, 647
AclWI GGATC 2 cut(s) 412, 449
AcsI RAATTY 3 cut(s) 425, 898, 1234
AcuI CTGAAG 1 cut(s) 1328
AcyI GRCGYC 1 cut(s) 982
AfaI GTAC 1 cut(s) 158
AfeI AGCGCT 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 300, 525, 547
AgsI TTSAA 1 cut(s) 1288
AjnI CCWGG 4 cut(s) 92, 159, 435, 534
Alw21I GWGCWC 2 cut(s) 213, 555
Alw26I GTCTC 4 cut(s) 94, 226, 964, 1068
AlwI GGATC 2 cut(s) 412, 449
AlwNI CAGNNNCTG 3 cut(s) 44, 47, 160
Aor51HI AGCGCT 1 cut(s) 353
AoxI GGCC 5 cut(s) 78, 135, 319, 433, 537
ApeKI GCWGC 8 cut(s) 38, 41, 44, 331, 349, 714, 941, 992
ApoI RAATTY 3 cut(s) 425, 898, 1234
ArsI GACNNNNNNTTYG 2 cut(s) 990, 1022
AspLEI GCGC 2 cut(s) 354, 1416
AspS9I GGNCC 1 cut(s) 538
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 2 cut(s) 118, 1087
AsuNHI GCTAGC 1 cut(s) 1024
BanII GRGCYC 2 cut(s) 213, 1263
BarI GAAGNNNNNNTAC 2 cut(s) 1143, 1175
BauI CACGAG 2 cut(s) 554, 954
Bbv12I GWGCWC 2 cut(s) 213, 555
BbvI GCAGC 8 cut(s) 31, 50, 53, 343, 361, 701, 928, 1004
BccI CCATC 4 cut(s) 515, 793, 1203, 1213
BceAI ACGGC 2 cut(s) 203, 1106
BcgI CGANNNNNNTGC 4 cut(s) 197, 231, 535, 569
BciT130I CCWGG 4 cut(s) 94, 161, 437, 536
BclI TGATCA 1 cut(s) 558
BcnI CCSGG 1 cut(s) 598
BcoDI GTCTC 4 cut(s) 94, 226, 964, 1068
BfaI CTAG 4 cut(s) 269, 335, 809, 1025
BfmI CTRYAG 1 cut(s) 651
BfoI RGCGCY 1 cut(s) 355
BglII AGATCT 2 cut(s) 1294, 1347
BlpI GCTNAGC 1 cut(s) 774
Bme1390I CCNGG 5 cut(s) 94, 161, 437, 536, 598
BmgT120I GGNCC 1 cut(s) 538
BmiI GGNNCC 4 cut(s) 292, 530, 880, 1262
BmrFI CCNGG 5 cut(s) 94, 161, 437, 536, 598
BmrI ACTGGG 2 cut(s) 682, 1393
BmsI GCATC 1 cut(s) 1146
BmtI GCTAGC 1 cut(s) 1028
BmuI ACTGGG 2 cut(s) 682, 1393
BpmI CTGGAG 4 cut(s) 42, 136, 483, 518
Bpu1102I GCTNAGC 1 cut(s) 774
BpuMI CCSGG 1 cut(s) 598
BsaHI GRCGYC 1 cut(s) 982
BsaI GGTCTC 1 cut(s) 94
BsaJI CCNNGG 2 cut(s) 232, 1050
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 525, 547
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 7 cut(s) 59, 395, 646, 677, 736, 1167, 1388
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 4 cut(s) 94, 161, 437, 536
BseDI CCNNGG 2 cut(s) 232, 1050
BseGI GGATG 4 cut(s) 249, 384, 1214, 1329
BseLI CCNNNNNNNGG 3 cut(s) 300, 525, 547
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 1 cut(s) 536
BseNI ACTGG 7 cut(s) 59, 395, 646, 677, 736, 1167, 1388
BseRI GAGGAG 2 cut(s) 79, 737
BseXI GCAGC 8 cut(s) 31, 50, 53, 343, 361, 701, 928, 1004
BsgI GTGCAG 1 cut(s) 124
Bsh1236I CGCG 1 cut(s) 578
BshFI GGCC 5 cut(s) 80, 137, 321, 435, 539
BsiHKAI GWGCWC 2 cut(s) 213, 555
BsiSI CCGG 2 cut(s) 597, 846
BslFI GGGAC 2 cut(s) 1323, 1400
BslI CCNNNNNNNGG 3 cut(s) 300, 525, 547
BsmAI GTCTC 4 cut(s) 94, 226, 964, 1068
BsmBI CGTCTC 1 cut(s) 226
BsmFI GGGAC 2 cut(s) 1323, 1400
BsmI GAATGC 2 cut(s) 572, 837
BsnI GGCC 5 cut(s) 80, 137, 321, 435, 539
Bso31I GGTCTC 1 cut(s) 94
Bsp1286I GDGCHC 3 cut(s) 213, 555, 1263
Bsp143I GATC 5 cut(s) 417, 454, 558, 1294, 1347
Bsp1720I GCTNAGC 1 cut(s) 774
Bsp19I CCATGG 1 cut(s) 1050
BspACI CCGC 5 cut(s) 35, 104, 411, 578, 647
BspANI GGCC 5 cut(s) 80, 137, 321, 435, 539
BspCNI CTCAG 1 cut(s) 535
BspFNI CGCG 1 cut(s) 578
BspLI GGNNCC 4 cut(s) 292, 530, 880, 1262
BspOI GCTAGC 1 cut(s) 1028
BspPI GGATC 2 cut(s) 412, 449
BspQI GCTCTTC 1 cut(s) 1347
BspTNI GGTCTC 1 cut(s) 94
BsrBI CCGCTC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 845
BsrI ACTGG 7 cut(s) 59, 395, 646, 677, 736, 1167, 1388
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 2 cut(s) 232, 1050
BssMI GATC 5 cut(s) 417, 454, 558, 1294, 1347
BssNAI GTATAC 1 cut(s) 469
BssNI GRCGYC 1 cut(s) 982
BssSI CACGAG 2 cut(s) 554, 954
BssT1I CCWWGG 1 cut(s) 1050
Bst1107I GTATAC 1 cut(s) 469
Bst2BI CACGAG 2 cut(s) 554, 954
Bst2UI CCWGG 4 cut(s) 94, 161, 437, 536
Bst4CI ACNGT 2 cut(s) 181, 473
Bst6I CTCTTC 2 cut(s) 617, 1347
BstACI GRCGYC 1 cut(s) 982
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 4 cut(s) 139, 306, 319, 1026
BstDEI CTNAG 2 cut(s) 522, 774
BstDSI CCRYGG 1 cut(s) 1050
BstF5I GGATG 4 cut(s) 249, 384, 1214, 1329
BstFNI CGCG 1 cut(s) 578
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 354, 1416
BstKTI GATC 5 cut(s) 420, 457, 561, 1297, 1350
BstMAI GTCTC 4 cut(s) 94, 226, 964, 1068
BstMBI GATC 5 cut(s) 417, 454, 558, 1294, 1347
BstMWI GCNNNNNNNGC 9 cut(s) 35, 41, 44, 53, 314, 458, 578, 653, 1055
BstNI CCWGG 4 cut(s) 94, 161, 437, 536
BstSCI CCNGG 5 cut(s) 92, 159, 435, 534, 596
BstSFI CTRYAG 1 cut(s) 651
BstUI CGCG 1 cut(s) 578
BstV1I GCAGC 8 cut(s) 31, 50, 53, 343, 361, 701, 928, 1004
BstX2I RGATCY 2 cut(s) 1294, 1347
BstXI CCANNNNNNTGG 1 cut(s) 443
BstYI RGATCY 2 cut(s) 1294, 1347
BstZ17I GTATAC 1 cut(s) 469
BsuRI GGCC 5 cut(s) 80, 137, 321, 435, 539
BtgI CCRYGG 1 cut(s) 1050
BtgZI GCGATG 1 cut(s) 358
BtsCI GGATG 4 cut(s) 249, 384, 1214, 1329
BtsI GCAGTG 1 cut(s) 1108
BtsIMutI CAGTG 3 cut(s) 66, 1108, 1174
Cac8I GCNNGC 4 cut(s) 139, 306, 319, 1026
CaiI CAGNNNCTG 3 cut(s) 44, 47, 160
CfoI GCGC 2 cut(s) 354, 1416
Cfr10I RCCGGY 1 cut(s) 845
Cfr13I GGNCC 1 cut(s) 538
CseI GACGC 1 cut(s) 971
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 1 cut(s) 157
CspCI CAANNNNNGTGG 2 cut(s) 114, 149
CviAII CATG 7 cut(s) 82, 357, 443, 741, 895, 1051, 1087
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 522, 774
DpnI GATC 5 cut(s) 419, 456, 560, 1296, 1349
DpnII GATC 5 cut(s) 417, 454, 558, 1294, 1347
Eam1104I CTCTTC 2 cut(s) 617, 1347
EarI CTCTTC 2 cut(s) 617, 1347
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 1050
Eco24I GRGCYC 2 cut(s) 213, 1263
Eco31I GGTCTC 1 cut(s) 94
Eco47III AGCGCT 1 cut(s) 353
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 1328
EcoICRI GAGCTC 1 cut(s) 211
EcoRII CCWGG 4 cut(s) 92, 159, 435, 534
EcoT14I CCWWGG 1 cut(s) 1050
EcoT22I ATGCAT 1 cut(s) 896
EcoT38I GRGCYC 2 cut(s) 213, 1263
ErhI CCWWGG 1 cut(s) 1050
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 7 cut(s) 85, 360, 446, 744, 898, 1054, 1090
FaqI GGGAC 2 cut(s) 1323, 1400
FatI CATG 7 cut(s) 81, 356, 442, 740, 894, 1050, 1086
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 558
FblI GTMKAC 1 cut(s) 468
FokI GGATG 4 cut(s) 236, 371, 1221, 1336
FriOI GRGCYC 2 cut(s) 213, 1263
FspBI CTAG 4 cut(s) 269, 335, 809, 1025
GlaI GCGC 2 cut(s) 353, 1415
GsuI CTGGAG 4 cut(s) 42, 136, 483, 518
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 5 cut(s) 80, 137, 321, 435, 539
HapII CCGG 2 cut(s) 597, 846
HgaI GACGC 1 cut(s) 971
HhaI GCGC 2 cut(s) 354, 1416
Hin1I GRCGYC 1 cut(s) 982
Hin1II CATG 7 cut(s) 85, 360, 446, 744, 898, 1054, 1090
Hin6I GCGC 2 cut(s) 352, 1414
HinP1I GCGC 2 cut(s) 352, 1414
HinfI GANTC 3 cut(s) 339, 957, 1363
HpaII CCGG 2 cut(s) 597, 846
HphI GGTGA 2 cut(s) 118, 1087
Hpy166II GTNNAC 3 cut(s) 469, 729, 1138
Hpy188I TCNGA 5 cut(s) 417, 525, 906, 1347, 1368
Hpy188III TCNNGA 4 cut(s) 115, 556, 755, 961
Hpy8I GTNNAC 3 cut(s) 469, 729, 1138
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 2 cut(s) 79, 1151
HpyCH4III ACNGT 2 cut(s) 181, 473
HpyCH4IV ACGT 1 cut(s) 563
HpyF10VI GCNNNNNNNGC 9 cut(s) 35, 41, 44, 53, 314, 458, 578, 653, 1055
HpyF3I CTNAG 2 cut(s) 522, 774
HpySE526I ACGT 1 cut(s) 563
Hsp92I GRCGYC 1 cut(s) 982
Hsp92II CATG 7 cut(s) 85, 360, 446, 744, 898, 1054, 1090
HspAI GCGC 2 cut(s) 352, 1414
Ksp22I TGATCA 1 cut(s) 558
Kzo9I GATC 5 cut(s) 417, 454, 558, 1294, 1347
LguI GCTCTTC 1 cut(s) 1347
LmnI GCTCC 7 cut(s) 61, 66, 314, 418, 1266, 1301, 1399
Lsp1109I GCAGC 8 cut(s) 31, 50, 53, 343, 361, 701, 928, 1004
LweI GCATC 1 cut(s) 1146
MabI ACCWGGT 1 cut(s) 159
MaeI CTAG 4 cut(s) 269, 335, 809, 1025
MaeII ACGT 1 cut(s) 563
MaeIII GTNAC 2 cut(s) 780, 1150
MalI GATC 5 cut(s) 419, 456, 560, 1296, 1349
MbiI CCGCTC 1 cut(s) 413
MboI GATC 5 cut(s) 417, 454, 558, 1294, 1347
MboII GAAGA 5 cut(s) 604, 1054, 1334, 1342, 1345
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 2 cut(s) 1294, 1347
MhlI GDGCHC 3 cut(s) 213, 555, 1263
MluCI AATT 7 cut(s) 425, 511, 684, 898, 907, 915, 1234
MlyI GAGTC 1 cut(s) 966
Mph1103I ATGCAT 1 cut(s) 896
MseI TTAA 1 cut(s) 1184
MslI CAYNNNNRTG 1 cut(s) 620
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 2 cut(s) 597, 846
MspR9I CCNGG 5 cut(s) 94, 161, 437, 536, 598
MunI CAATTG 1 cut(s) 684
Mva1269I GAATGC 2 cut(s) 572, 837
MvaI CCWGG 4 cut(s) 94, 161, 437, 536
MvnI CGCG 1 cut(s) 578
MwoI GCNNNNNNNGC 9 cut(s) 35, 41, 44, 53, 314, 458, 578, 653, 1055
NciI CCSGG 1 cut(s) 598
NcoI CCATGG 1 cut(s) 1050
NdeI CATATG 1 cut(s) 310
NdeII GATC 5 cut(s) 417, 454, 558, 1294, 1347
NheI GCTAGC 1 cut(s) 1024
NlaIII CATG 7 cut(s) 85, 360, 446, 744, 898, 1054, 1090
NlaIV GGNNCC 4 cut(s) 292, 530, 880, 1262
NmuCI GTSAC 1 cut(s) 780
NsiI ATGCAT 1 cut(s) 896
PciSI GCTCTTC 1 cut(s) 1347
PctI GAATGC 2 cut(s) 572, 837
PfeI GAWTC 2 cut(s) 339, 1363
PfoI TCCNGGA 1 cut(s) 92
PleI GAGTC 1 cut(s) 965
PpsI GAGTC 1 cut(s) 965
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 4 cut(s) 92, 159, 435, 534
PspGI CCWGG 4 cut(s) 92, 159, 435, 534
PspN4I GGNNCC 4 cut(s) 292, 530, 880, 1262
PspPI GGNCC 1 cut(s) 538
PstNI CAGNNNCTG 3 cut(s) 44, 47, 160
PsuI RGATCY 2 cut(s) 1294, 1347
PvuII CAGCTG 1 cut(s) 44
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 620
SacI GAGCTC 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 1347
SaqAI TTAA 1 cut(s) 1184
Sau3AI GATC 5 cut(s) 417, 454, 558, 1294, 1347
Sau96I GGNCC 1 cut(s) 538
SchI GAGTC 1 cut(s) 966
ScrFI CCNGG 5 cut(s) 94, 161, 437, 536, 598
SduI GDGCHC 3 cut(s) 213, 555, 1263
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 1 cut(s) 1146
SfcI CTRYAG 1 cut(s) 651
SmiMI CAYNNNNRTG 1 cut(s) 620
Sse9I AATT 7 cut(s) 425, 511, 684, 898, 907, 915, 1234
SsiI CCGC 5 cut(s) 35, 104, 411, 578, 647
SspMI CTAG 4 cut(s) 269, 335, 809, 1025
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 5 cut(s) 92, 159, 435, 534, 596
StyI CCWWGG 1 cut(s) 1050
TaaI ACNGT 2 cut(s) 181, 473
TaiI ACGT 1 cut(s) 566
TaqI TCGA 4 cut(s) 207, 754, 824, 962
TaqII GACCGA 1 cut(s) 179
TasI AATT 7 cut(s) 425, 511, 684, 898, 907, 915, 1234
TauI GCSGC 4 cut(s) 38, 413, 581, 650
TfiI GAWTC 2 cut(s) 339, 1363
Tru1I TTAA 1 cut(s) 1184
Tru9I TTAA 1 cut(s) 1184
TscAI CASTG 3 cut(s) 66, 1108, 1174
TseFI GTSAC 1 cut(s) 780
TseI GCWGC 8 cut(s) 38, 41, 44, 331, 349, 714, 941, 992
Tsp45I GTSAC 1 cut(s) 780
TspDTI ATGAA 6 cut(s) 98, 361, 596, 604, 729, 911
TspGWI ACGGA 1 cut(s) 994
TspRI CASTG 3 cut(s) 66, 1108, 1174
XapI RAATTY 3 cut(s) 425, 898, 1234
XmiI GTMKAC 1 cut(s) 468
XspI CTAG 4 cut(s) 269, 335, 809, 1025
Zsp2I ATGCAT 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.