Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002046

Physical Location & Seq

Genomic Coordinates Reverse (-)

63101362 .. 63102972

Gene Structure 1611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG414700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCAAATGCACTTGGAACTCTTTGTGGTCAAGCATATGGAGCAGGCCAAGTAGACTCACTTGGTCTCTATATGCAGCGCTCCTGCATTATCCTAGCCATCACTTGTTTCCTCCTTTCATCACTTTACATTTTCGCCACTCCATTCCTAAAGATTTTAGTCCAAGAAGACAATATAGCCGAGTTTGCTGGAAAATATAGTCTGTTGATAATCCCTCAGATGTTCTCCTTTTCCATCAATTTGCCCACCCAAAAGTTCTTACAGGCTCAGAGCAAGGTGGGGATCATCACATGGATCTCCTTTGTGGCTCTAGTCACACACACAGGATTTCTGTATCTCTTCATTAGCGTACTCGACTGGGGGCTGAATGGTGCAGCTGTAGCTTATAATATCACATATTGGGAAGTTGCAATTTGTCAGTTTGTGTATGCTGTATTTTTGTGCAAGGAAGGTTGGACTGGATTTTCATGGTTGGCATTTAAAGACATGTGGGCTTTTGCTAGGCTGTCCCTTGCCTCATGTATGATGTTTTGCCTGGAGATGTGGTACACTATGAGTCTGAACATTCTTGCCGGTCAACTTGAAAATGCAGTGATTGCTCTTGGTTCCTTTTCTATACGCATTCGAGTCTCGAATGAACTAGGGATGGGGCATCCCAGAGCTGCCAAATACTCCATCTGCGTTGCAGTCTTACAATCTCTCGTAGTTGGGATATTGTCTATGACTTTTATCTTCTTAAGTAGAGACTATATTGCCAGTGTTTTCACCGAGAGCAAAGTTATGCAGCAAGCTGTCGCTCGTTTAGCTTACTTTCTTGGTGTAACCATGCTTCTTAGTAGTGTTGCTGTTGGAGGTGGATGGCAAGTGCTGGTAGCTTATATAAATTTGGCTGCTTATTATCTATTTGGGCTCCCACTTGCAATCTTTCTTGGATTTAAAGCAAATTTGGGTCCAATGGGACTTTATGGTGGCATAATATGTGGAAGTGCTCTTGAGATCTTATTCCTATTGATTATGACTTCCAGAACCAACTGGGACAATGACGTAAAGCAAACGACCAAGCGCATAAAGAAATGGGGGAGCAAGGAAATCACTGAGAAGATAGTTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

370

Amino Acids

40.96

Weight (kDa)

8.72

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	1 - 113	3.6e-19	MatE
MatE	PF01554	203 - 308	1.5e-07	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002046)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g15630 FvH4_7g30024 FvH4_7g30070 FvH4_7g30070 FvH4_7g30070 FvH4_7g30072 FvH4_7g30073
malus_domestica	MD01G1206400.v1.1 MD07G1277100.v1.1
pyrus_communis	pycom01g21630 pycom07g25200
rosa_chinensis	RchiOBHm_Chr1g0378011 RchiOBHm_Chr1g0378051
rosa_laevigata	RLG00000026477 RLG00000026478
rosa_multiflora	Rmu_co8476257.1_g000001 Rmu_sc0002068.1_g000001 Rmu_sc0002068.1_g000002 Rmu_sc0005268.1_g000013
rosa_roxburghii	Rroxscaffold_156G00440340 Rroxscaffold_156G00440350 Rroxscaffold_156G00440370 Rroxscaffold_156G00440410 Rroxscaffold_4G00280820 Rroxscaffold_4G00280830 Rroxscaffold_4G00280840
rosa_samantha	Rh1AG424600 Rh1AG425000 Rh1AG425100 Rh1BG383700 Rh1BG384300 Rh1BG384600 Rh1CG397400 Rh1CG398000 Rh1CG398100 Rh1CG398200 Rh1CG398600 Rh1DG414700 Rh1DG415500 Rh1DG415600 Rh1DG415700 Rh1DG415900
rosa_wichuraiana	Rw0G014950 Rw1G037320 Rw1G037340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	54
AclWI	GGATC	2 cut(s)	290, 302
AcsI	RAATTY	2 cut(s)	883, 943
AfaI	GTAC	2 cut(s)	351, 548
AfeI	AGCGCT	1 cut(s)	80
AflII	CTTAAG	1 cut(s)	736
AflIII	ACRYGT	1 cut(s)	486
AgsI	TTSAA	1 cut(s)	584
AjnI	CCWGG	1 cut(s)	534
AluBI	AGCT	6 cut(s)	377, 383, 662, 791, 806, 875
AluI	AGCT	6 cut(s)	377, 383, 662, 791, 806, 875
Alw21I	GWGCWC	1 cut(s)	991
Alw26I	GTCTC	3 cut(s)	71, 634, 738
AlwI	GGATC	2 cut(s)	290, 302
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	5 cut(s)	76, 374, 662, 784, 890
ApoI	RAATTY	2 cut(s)	883, 943
AspLEI	GCGC	2 cut(s)	81, 1065
AspS9I	GGNCC	1 cut(s)	950
AsuHPI	GGTGA	1 cut(s)	757
AvaII	GGWCC	1 cut(s)	950
BanII	GRGCYC	1 cut(s)	912
BarI	GAAGNNNNNNTAC	2 cut(s)	813, 845
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	991
BbvI	GCAGC	5 cut(s)	88, 386, 649, 796, 877
BccI	CCATC	5 cut(s)	107, 242, 640, 683, 852
BciT130I	CCWGG	1 cut(s)	536
BcoDI	GTCTC	3 cut(s)	71, 634, 738
BfaI	CTAG	4 cut(s)	95, 311, 501, 641
BfmI	CTRYAG	1 cut(s)	378
BfoI	RGCGCY	1 cut(s)	82
BfrI	CTTAAG	1 cut(s)	736
BglII	AGATCT	1 cut(s)	996
BisI	GCNGC	5 cut(s)	77, 375, 663, 785, 891
BlsI	GCNGC	5 cut(s)	78, 376, 664, 786, 892
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	950
BmgT120I	GGNCC	1 cut(s)	950
BmiI	GGNNCC	3 cut(s)	607, 911, 951
BmrFI	CCNGG	1 cut(s)	536
BmrI	ACTGGG	2 cut(s)	367, 1042
BmsI	GCATC	1 cut(s)	661
BmuI	ACTGGG	2 cut(s)	367, 1042
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	1013
BsaI	GGTCTC	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bse118I	RCCGGY	1 cut(s)	572
Bse1I	ACTGG	4 cut(s)	362, 463, 756, 1037
BseBI	CCWGG	1 cut(s)	536
BseGI	GGATG	3 cut(s)	651, 652, 863
BseMII	CTCAG	3 cut(s)	230, 281, 1086
BseNI	ACTGG	4 cut(s)	362, 463, 756, 1037
BseXI	GCAGC	5 cut(s)	88, 386, 649, 796, 877
BsgI	GTGCAG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	991
BsiSI	CCGG	1 cut(s)	573
BslFI	GGGAC	3 cut(s)	493, 972, 1049
BsmAI	GTCTC	3 cut(s)	71, 634, 738
BsmFI	GGGAC	3 cut(s)	493, 972, 1049
BsmI	GAATGC	1 cut(s)	621
BsnI	GGCC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	912, 991
Bsp143I	GATC	3 cut(s)	282, 294, 996
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	3 cut(s)	229, 280, 1087
BspLI	GGNNCC	3 cut(s)	607, 911, 951
BspPI	GGATC	2 cut(s)	290, 302
BspTI	CTTAAG	1 cut(s)	736
BspTNI	GGTCTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	572
BsrI	ACTGG	4 cut(s)	362, 463, 756, 1037
BssAI	RCCGGY	1 cut(s)	572
BssMI	GATC	3 cut(s)	282, 294, 996
Bst2UI	CCWGG	1 cut(s)	536
Bst6I	CTCTTC	1 cut(s)	344
BstAFI	CTTAAG	1 cut(s)	736
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstC8I	GCNNGC	2 cut(s)	46, 789
BstDEI	CTNAG	4 cut(s)	216, 267, 833, 1095
BstF5I	GGATG	3 cut(s)	651, 652, 863
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	2 cut(s)	81, 1065
BstKTI	GATC	3 cut(s)	285, 297, 999
BstMAI	GTCTC	3 cut(s)	71, 634, 738
BstMBI	GATC	3 cut(s)	282, 294, 996
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 185, 380, 596, 803
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	534
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	5 cut(s)	88, 386, 649, 796, 877
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	2 cut(s)	294, 996
BstYI	RGATCY	2 cut(s)	294, 996
BsuRI	GGCC	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	651, 652, 863
BtsI	GCAGTG	1 cut(s)	597
BtsIMutI	CAGTG	3 cut(s)	597, 763, 1092
Cac8I	GCNNGC	2 cut(s)	46, 789
CfoI	GCGC	2 cut(s)	81, 1065
Cfr10I	RCCGGY	1 cut(s)	572
Cfr13I	GGNCC	1 cut(s)	950
Csp6I	GTAC	2 cut(s)	350, 547
CviAII	CATG	5 cut(s)	291, 468, 487, 519, 826
CviQI	GTAC	2 cut(s)	350, 547
DdeI	CTNAG	4 cut(s)	216, 267, 833, 1095
DpnI	GATC	3 cut(s)	284, 296, 998
DpnII	GATC	3 cut(s)	282, 294, 996
DraI	TTTAAA	2 cut(s)	481, 937
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco24I	GRGCYC	1 cut(s)	912
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	950
Eco47III	AGCGCT	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	912
FaeI	CATG	5 cut(s)	294, 471, 490, 522, 829
FaqI	GGGAC	3 cut(s)	493, 972, 1049
FatI	CATG	5 cut(s)	290, 467, 486, 518, 825
FauNDI	CATATG	1 cut(s)	37
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	5 cut(s)	77, 375, 663, 785, 891
FokI	GGATG	3 cut(s)	639, 658, 870
FriOI	GRGCYC	1 cut(s)	912
Fsp4HI	GCNGC	5 cut(s)	77, 375, 663, 785, 891
FspBI	CTAG	4 cut(s)	95, 311, 501, 641
GlaI	GCGC	2 cut(s)	80, 1064
GluI	GCNGC	5 cut(s)	77, 375, 663, 785, 891
GsuI	CTGGAG	1 cut(s)	557
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	573
HhaI	GCGC	2 cut(s)	81, 1065
Hin1II	CATG	5 cut(s)	294, 471, 490, 522, 829
Hin6I	GCGC	2 cut(s)	79, 1063
HinP1I	GCGC	2 cut(s)	79, 1063
HincII	GTYRAC	1 cut(s)	578
HindII	GTYRAC	1 cut(s)	578
HinfI	GANTC	3 cut(s)	56, 556, 627
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	1 cut(s)	757
Hpy166II	GTNNAC	3 cut(s)	55, 549, 578
Hpy188I	TCNGA	3 cut(s)	219, 270, 561
Hpy188III	TCNNGA	3 cut(s)	631, 992, 1023
Hpy8I	GTNNAC	3 cut(s)	55, 549, 578
HpyAV	CCTTC	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	1044
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 185, 380, 596, 803
HpyF3I	CTNAG	4 cut(s)	216, 267, 833, 1095
HpySE526I	ACGT	1 cut(s)	1044
Hsp92II	CATG	5 cut(s)	294, 471, 490, 522, 829
HspAI	GCGC	2 cut(s)	79, 1063
Kzo9I	GATC	3 cut(s)	282, 294, 996
LmnI	GCTCC	4 cut(s)	41, 86, 915, 1080
Lsp1109I	GCAGC	5 cut(s)	88, 386, 649, 796, 877
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	4 cut(s)	95, 311, 501, 641
MaeII	ACGT	1 cut(s)	1044
MaeIII	GTNAC	2 cut(s)	313, 820
MalI	GATC	3 cut(s)	284, 296, 998
MboI	GATC	3 cut(s)	282, 294, 996
MboII	GAAGA	4 cut(s)	179, 331, 724, 1111
MflI	RGATCY	2 cut(s)	294, 996
MhlI	GDGCHC	2 cut(s)	912, 991
MluCI	AATT	4 cut(s)	238, 411, 883, 943
MlyI	GAGTC	3 cut(s)	50, 565, 636
MmeI	TCCRAC	2 cut(s)	434, 829
MnlI	CCTC	4 cut(s)	122, 225, 526, 845
MseI	TTAA	3 cut(s)	480, 737, 936
MspA1I	CMGCKG	1 cut(s)	377
MspCI	CTTAAG	1 cut(s)	736
MspI	CCGG	1 cut(s)	573
MspR9I	CCNGG	1 cut(s)	536
Mva1269I	GAATGC	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	536
MwoI	GCNNNNNNNGC	5 cut(s)	41, 185, 380, 596, 803
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	3 cut(s)	282, 294, 996
NlaIII	CATG	5 cut(s)	294, 471, 490, 522, 829
NlaIV	GGNNCC	3 cut(s)	607, 911, 951
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	490
PciI	ACATGT	1 cut(s)	486
PctI	GAATGC	1 cut(s)	621
PkrI	GCNGC	5 cut(s)	78, 376, 664, 786, 892
PleI	GAGTC	3 cut(s)	50, 564, 635
PpsI	GAGTC	3 cut(s)	50, 564, 635
PscI	ACATGT	1 cut(s)	486
PsiI	TTATAA	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	534
PspGI	CCWGG	1 cut(s)	534
PspN4I	GGNNCC	3 cut(s)	607, 911, 951
PspPI	GGNCC	1 cut(s)	950
PsuI	RGATCY	2 cut(s)	294, 996
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	351, 548
RsaNI	GTAC	2 cut(s)	350, 547
SaqAI	TTAA	3 cut(s)	480, 737, 936
SatI	GCNGC	5 cut(s)	77, 375, 663, 785, 891
Sau3AI	GATC	3 cut(s)	282, 294, 996
Sau96I	GGNCC	1 cut(s)	950
SchI	GAGTC	3 cut(s)	50, 565, 636
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	2 cut(s)	912, 991
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	950
SmlI	CTYRAG	2 cut(s)	736, 992
SmoI	CTYRAG	2 cut(s)	736, 992
Sse9I	AATT	4 cut(s)	238, 411, 883, 943
SspMI	CTAG	4 cut(s)	95, 311, 501, 641
StyD4I	CCNGG	1 cut(s)	534
TaiI	ACGT	1 cut(s)	1047
TaqI	TCGA	3 cut(s)	354, 625, 632
TasI	AATT	4 cut(s)	238, 411, 883, 943
Tru1I	TTAA	3 cut(s)	480, 737, 936
Tru9I	TTAA	3 cut(s)	480, 737, 936
TscAI	CASTG	3 cut(s)	597, 763, 1099
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	5 cut(s)	76, 374, 662, 784, 890
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	4 cut(s)	108, 331, 456, 651
TspRI	CASTG	3 cut(s)	597, 763, 1099
Vha464I	CTTAAG	1 cut(s)	736
VpaK11BI	GGWCC	1 cut(s)	950
XapI	RAATTY	2 cut(s)	883, 943
XceI	RCATGY	1 cut(s)	490
XmiI	GTMKAC	1 cut(s)	54
XspI	CTAG	4 cut(s)	95, 311, 501, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.