Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002606

Physical Location & Seq

Genomic Coordinates Reverse (-)

13710483 .. 13711253

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15891.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGTTGTTACGGTTGATCAGCAGAAGCACTTGATCACCATTTTATCTGATGCAACCAAGGAAGCTATCTGTGTGTTCTCTGATCATGCTGTAGAGAGTTGCGAAGTGAATAATGGTGATACAATGGGTGACTCCCCCAGCGTAAGGTATCACAAAACTCCTGCTCGATTTCCGAGGTTTTCTGGGGGTGGAAGAGGGCGTGATGGACAGGATGGTTTCAGTAAAGGGATCCGAGTAAAACTGCGGCTAGGTCCCTATAAGGGATGCAGGGGGCGTGTGGTGGAGGTTAAAGGATCAAATGTAAGGGTTGAACTAGAGTCCCAGATGAGAACTGTTGTTGTTGATCATTTGCATTGTATTTCGGACTCTGATAATGGGGCTGCTGCAGCTACAACACCATATCGTTCAGGTTTTGAGACGCCAATGCCTTACATGCAGACTCCCATGAGAGATACTGGAGCAATGTCAATGCCTTACCTGATGACTCCCCTTAGAGATCCTGCAGCAAGCCCAACGCCTTACATGATGACTCCCATGAGAGATCCAGGAGCAACACCTTACATGATGACTCCCATGAGAGATCCAGGAGCAACACCTTACATGATGACTCCCATGAGAGATCCAGGAGCAACACCTTACATGATGACTCCCAGAAGAGATCCCCGAGCAACACCAGTACATAGTGGTATGAGGACTCCTCCTATGACTCCCATGAGAGATCCCCGAGCAACACCAATACATGGTCACGTGGGAACTCCTCCTATATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KOW Spt5-NGN Spt5_N

Protein Analysis

257

Amino Acids

28.18

Weight (kDa)

9.23

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KOW5_SPT5	PF23290	78 - 115	5e-12	Transcription elongation factor SPT5, fifth KOW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08350
fragaria_vesca	FvH4_2g14770 FvH4_2g14770 FvH4_2g14770 FvH4_7g15891 FvH4_7g15900
malus_domestica	MD01G1075900.v1.1 MD05G1013100.v1.1 MD10G1013600.v1.1
prunus_persica	Prupe.2G047200_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1
pyrus_communis	pycom01g10480 pycom05g00760 pycom10g00830
rosa_chinensis	RchiOBHm_Chr1g0358771 RchiOBHm_Chr6g0277331
rosa_laevigata	RLG00000013309 RLG00000015056 RLG00000027924 RLG00000027930 RLG00000027931
rosa_multiflora	Rmu_co8026512.1_g000001 Rmu_sc0000030.1_g000027 Rmu_sc0017529.1_g000003 Rmu_sc0031713.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297640 Rroxscaffold_7G00191440
rosa_rugosa	Rorug01G0264800 Rorug01G0265100 Rorug06G0107200
rosa_samantha	Rh1AG279200 Rh1BG245800 Rh1CG263000 Rh1DG274100 Rh6BG222000 Rh6DG215000
rosa_wichuraiana	Rw1G024810 Rw6G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	740
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	9 cut(s)	223, 236, 301, 491, 536, 575, 614, 653, 713
AcvI	CACGTG	1 cut(s)	748
AcyI	GRCGYC	1 cut(s)	419
AfaI	GTAC	1 cut(s)	678
AfiI	CCNNNNNNNGG	3 cut(s)	144, 260, 740
AgsI	TTSAA	1 cut(s)	311
AjnI	CCWGG	3 cut(s)	544, 583, 622
AluBI	AGCT	2 cut(s)	65, 389
AluI	AGCT	2 cut(s)	65, 389
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	9 cut(s)	223, 236, 301, 491, 536, 575, 614, 653, 713
Ama87I	CYCGRG	2 cut(s)	663, 723
ApeKI	GCWGC	4 cut(s)	380, 383, 386, 503
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	3 cut(s)	28, 128, 140
AvaI	CYCGRG	2 cut(s)	663, 723
AvaII	GGWCC	1 cut(s)	251
BamHI	GGATCC	1 cut(s)	228
BbrPI	CACGTG	1 cut(s)	748
BbvI	GCAGC	4 cut(s)	367, 370, 398, 515
BccI	CCATC	2 cut(s)	197, 206
BciT130I	CCWGG	3 cut(s)	546, 585, 624
BclI	TGATCA	4 cut(s)	16, 33, 82, 343
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	2 cut(s)	248, 314
BfmI	CTRYAG	3 cut(s)	90, 384, 501
BisI	GCNGC	5 cut(s)	245, 381, 384, 387, 504
BlsI	GCNGC	5 cut(s)	246, 382, 385, 388, 505
Bme1390I	CCNGG	3 cut(s)	546, 585, 624
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	2 cut(s)	663, 723
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	2 cut(s)	230, 253
BmrFI	CCNGG	3 cut(s)	546, 585, 624
BmsI	GCATC	2 cut(s)	40, 254
BplI	GAGNNNNNCTC	2 cut(s)	682, 714
BpmI	CTGGAG	1 cut(s)	477
BsaAI	YACGTR	1 cut(s)	748
BsaHI	GRCGYC	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	57, 173
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 260, 740
Bse1I	ACTGG	2 cut(s)	460, 674
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	3 cut(s)	546, 585, 624
BseDI	CCNNGG	2 cut(s)	57, 173
BseGI	GGATG	2 cut(s)	217, 269
BseLI	CCNNNNNNNGG	3 cut(s)	144, 260, 740
BseMI	GCAATG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	460, 674
BseRI	GAGGAG	2 cut(s)	687, 747
BseXI	GCAGC	4 cut(s)	367, 370, 398, 515
BseYI	CCCAGC	1 cut(s)	137
BsiHKCI	CYCGRG	2 cut(s)	663, 723
BslFI	GGGAC	2 cut(s)	237, 304
BslI	CCNNNNNNNGG	3 cut(s)	144, 260, 740
BsmAI	GTCTC	1 cut(s)	410
BsmBI	CGTCTC	1 cut(s)	410
BsmFI	GGGAC	2 cut(s)	237, 304
BsoBI	CYCGRG	2 cut(s)	663, 723
BspACI	CCGC	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	230, 253
BspMAI	CTGCAG	2 cut(s)	388, 505
BspPI	GGATC	9 cut(s)	223, 236, 301, 491, 536, 575, 614, 653, 713
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	460, 674
BssECI	CCNNGG	2 cut(s)	57, 173
BssNI	GRCGYC	1 cut(s)	419
BssT1I	CCWWGG	1 cut(s)	57
Bst2UI	CCWGG	3 cut(s)	546, 585, 624
Bst4CI	ACNGT	2 cut(s)	13, 334
Bst6I	CTCTTC	2 cut(s)	187, 649
BstACI	GRCGYC	1 cut(s)	419
BstBAI	YACGTR	1 cut(s)	748
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	491
BstF5I	GGATG	2 cut(s)	217, 269
BstMAI	GTCTC	1 cut(s)	410
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 433
BstNI	CCWGG	3 cut(s)	546, 585, 624
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	3 cut(s)	544, 583, 622
BstSFI	CTRYAG	3 cut(s)	90, 384, 501
BstV1I	GCAGC	4 cut(s)	367, 370, 398, 515
BstX2I	RGATCY	7 cut(s)	228, 496, 541, 580, 619, 658, 718
BstYI	RGATCY	7 cut(s)	228, 496, 541, 580, 619, 658, 718
BtsCI	GGATG	2 cut(s)	217, 269
Cac8I	GCNNGC	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	677
CviJI	RGCY	5 cut(s)	65, 247, 380, 389, 510
CviKI_1	RGCY	5 cut(s)	65, 247, 380, 389, 510
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	1 cut(s)	491
Eam1104I	CTCTTC	2 cut(s)	187, 649
EarI	CTCTTC	2 cut(s)	187, 649
Eco130I	CCWWGG	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	251
Eco72I	CACGTG	1 cut(s)	748
Eco88I	CYCGRG	2 cut(s)	663, 723
EcoO109I	RGGNCCY	1 cut(s)	251
EcoRII	CCWGG	3 cut(s)	544, 583, 622
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	410
FaqI	GGGAC	2 cut(s)	237, 304
FbaI	TGATCA	4 cut(s)	16, 33, 82, 343
Fnu4HI	GCNGC	5 cut(s)	245, 381, 384, 387, 504
FokI	GGATG	2 cut(s)	224, 276
Fsp4HI	GCNGC	5 cut(s)	245, 381, 384, 387, 504
FspBI	CTAG	2 cut(s)	248, 314
GluI	GCNGC	5 cut(s)	245, 381, 384, 387, 504
GsaI	CCCAGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	427
Hin1I	GRCGYC	1 cut(s)	419
HphI	GGTGA	3 cut(s)	28, 128, 140
Hpy188I	TCNGA	6 cut(s)	49, 82, 174, 233, 364, 370
HpyCH4III	ACNGT	2 cut(s)	13, 334
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	6 cut(s)	53, 267, 352, 386, 436, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 433
HpyF3I	CTNAG	1 cut(s)	491
HpySE526I	ACGT	1 cut(s)	747
Hsp92I	GRCGYC	1 cut(s)	419
Ksp22I	TGATCA	4 cut(s)	16, 33, 82, 343
LmnI	GCTCC	4 cut(s)	458, 548, 587, 626
Lsp1109I	GCAGC	4 cut(s)	367, 370, 398, 515
LweI	GCATC	2 cut(s)	40, 254
MaeI	CTAG	2 cut(s)	248, 314
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	3 cut(s)	7, 128, 743
MboII	GAAGA	2 cut(s)	204, 666
MflI	RGATCY	7 cut(s)	228, 496, 541, 580, 619, 658, 718
MnlI	CCTC	6 cut(s)	168, 188, 277, 684, 708, 768
MseI	TTAA	1 cut(s)	288
MspR9I	CCNGG	3 cut(s)	546, 585, 624
MvaI	CCWGG	3 cut(s)	546, 585, 624
MwoI	GCNNNNNNNGC	2 cut(s)	386, 433
NlaIV	GGNNCC	2 cut(s)	230, 253
NmuCI	GTSAC	2 cut(s)	128, 743
NspI	RCATGY	1 cut(s)	436
PflMI	CCANNNNNTGG	1 cut(s)	740
PfoI	TCCNGGA	3 cut(s)	544, 583, 622
PkrI	GCNGC	5 cut(s)	246, 382, 385, 388, 505
PmaCI	CACGTG	1 cut(s)	748
PmlI	CACGTG	1 cut(s)	748
Ppu21I	YACGTR	1 cut(s)	748
PpuMI	RGGWCCY	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	251
Psp6I	CCWGG	3 cut(s)	544, 583, 622
PspCI	CACGTG	1 cut(s)	748
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	3 cut(s)	544, 583, 622
PspN4I	GGNNCC	2 cut(s)	230, 253
PspPI	GGNCC	1 cut(s)	251
PspPPI	RGGWCCY	1 cut(s)	251
PstI	CTGCAG	2 cut(s)	388, 505
PsuI	RGATCY	7 cut(s)	228, 496, 541, 580, 619, 658, 718
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	5 cut(s)	245, 381, 384, 387, 504
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	3 cut(s)	546, 585, 624
SfaNI	GCATC	2 cut(s)	40, 254
SfcI	CTRYAG	3 cut(s)	90, 384, 501
SinI	GGWCC	1 cut(s)	251
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	2 cut(s)	248, 314
StyD4I	CCNGG	3 cut(s)	544, 583, 622
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	13, 334
TaiI	ACGT	1 cut(s)	750
TaqI	TCGA	1 cut(s)	166
TatI	WGTACW	1 cut(s)	676
TauI	GCSGC	1 cut(s)	247
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TseFI	GTSAC	2 cut(s)	128, 743
TseI	GCWGC	4 cut(s)	380, 383, 386, 503
Tsp45I	GTSAC	2 cut(s)	128, 743
Van91I	CCANNNNNTGG	1 cut(s)	740
VpaK11BI	GGWCC	1 cut(s)	251
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	2 cut(s)	248, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.