Rmu_sc0017529.1_g000003

Transcription elongation factor SPT5

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017529.1
Physical Location & Seq
Forward (+)
17341 .. 22598
5258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017529.1_g000003.1.cds

Sequence Viewer

Length: 1920 bp
atggacaagcgtgccaagtctgtttgtggatccaatgaattgtctcgttttcctggatcatctgagatgctcaatagctctgtagctatttctactaccgaagaatctaagccattgaggaggattggaggagatgagcgtttgggttctgaggaatttggggagtcctccactgccaattctgtggttagattcctcaaccatttgttcatcactaatgaactgtcttttgtacagcctatgattcctgctgcttctggatcattagctcgaacatctgagttggtctctagcactgcagctagaccttctgtccggcctaaggcagtgaggattggaggtgctgagtcgttgggttttgaggaatttggggaatccttcattgctgatcctgtgtacctcgatgctttaggttggccagaagatccatctccagagatagagaccaactcagatggtccagctaatgacccagaagcagcagcagtcataggctttagacagctgggtgtacgagtacagtccatgcgagatccattggcacgtggttatattgagaagattgatggcttatctgggatgatctttaaagatggtttccatcttaaagttgtttctgataaaagtataaaagaggcaaaaccctccttgcaagaacttgaagaattccaggaacttgatggtgatggagatcaaacaattccaaatagaaagaaaggcgaaagctttatgaagggcgatgcagttattgttacagagggagatctgagaaacttggtgggacgggttgagaaagttgagttagggactgttcatatcaaagcggaaatggatggcctcccggaaactgttgccatcaatcaaacagcacttcagaaatgctttaaagaagggcagcatgtgaaggttgttagtggtagtcaacaaggagcaactggcatggttgttaaggttgatcagcagaagcagttgatcaccattttatctgatgcagccaatgaagctatctgtgtgttctctgatcatgttgtggagagtcctgaagtaaataatggtgatacaatgtgtgactcccacaacttacggtatcgcaaaacccctggtcgaagtccgaggttttctggaggtgcaagaaggcatgatgggcaggatggctttggtaaagggagccgagtaaagttccgtctaggtccctataaaggctgcagggggcgtgttgtggaggtcaaaggaccaaatgtaagggttgaactagagccccagatgaaaactattgttgttgatcgtctgcattgtatttcagaatcaggtaatgttgctgctgcagttacaacaccatatcgctctggttgtgagaccccaatgccttacatgaggactcctatgagagatcctggagcaacgtcaatgccttacatgacaactcccatgagagatcctggagcatccccaatgcgttatatgacgactccctacatgatgactcccagaagagattccccccgagctacaccaatacatggtggcatgagaactccacctatgactcccccgagctacaccaatacatggtggcatgagaactccacctatgactcccatgagagatccccgagcaacaccgatacatggtggcatgaggacccctcctatatattagagcttgattcaacttttggtttatcaaatgatggttgtctggttgcgttgtctaggaagtctccatatgtgcaaactggccacagggaaaatgacctttcagaatttgatgaatcaagagaaatacttgagtgtttggttgatgaatataaggcctgtgagtccccagattacatcaaatggggaatggaggatccagaccacgttcttacaggagaaggcaatgcagcaggaacagtggacccaaaattggcagcatga

Protein Analysis

639

Amino Acids

70.15

Weight (kDa)

5.31

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1520, 1569
AciI CCGC 1 cut(s) 824
AcoI YGGCCR 2 cut(s) 416, 1738
AcsI RAATTY 4 cut(s) 155, 365, 665, 1763
AcuI CTGAAG 2 cut(s) 857, 1062
AcvI CACGTG 1 cut(s) 545
AfaI GTAC 4 cut(s) 234, 398, 513, 519
AfiI CCNNNNNNNGG 6 cut(s) 322, 1199, 1520, 1569, 1629, 1909
AgsI TTSAA 3 cut(s) 662, 1250, 1671
AhdI GACNNNNNGTC 1 cut(s) 311
AjnI CCWGG 5 cut(s) 52, 669, 1099, 1393, 1438
Alw26I GTCTC 5 cut(s) 48, 292, 437, 1349, 1725
Ama87I CYCGRG 3 cut(s) 1503, 1552, 1612
AoxI GGCC 5 cut(s) 317, 416, 835, 1738, 1812
ApoI RAATTY 4 cut(s) 155, 365, 665, 1763
Asp700I GAANNNNTTC 1 cut(s) 1495
AspS9I GGNCC 5 cut(s) 458, 1190, 1232, 1642, 1900
AsuC2I CCSGG 1 cut(s) 842
AsuHPI GGTGA 3 cut(s) 695, 967, 1067
AvaI CYCGRG 3 cut(s) 1503, 1552, 1612
AvaII GGWCC 5 cut(s) 458, 1190, 1232, 1642, 1900
AxyI CCTNAGG 1 cut(s) 321
BalI TGGCCA 2 cut(s) 418, 1740
BamHI GGATCC 2 cut(s) 29, 1852
BanII GRGCYC 1 cut(s) 1260
BbrPI CACGTG 1 cut(s) 545
BciT130I CCWGG 5 cut(s) 54, 671, 1101, 1395, 1440
BclI TGATCA 3 cut(s) 955, 972, 1021
BcnI CCSGG 1 cut(s) 842
BcoDI GTCTC 5 cut(s) 48, 292, 437, 1349, 1725
BfaI CTAG 5 cut(s) 291, 303, 1187, 1253, 1713
BfmI CTRYAG 4 cut(s) 81, 297, 1204, 1323
BglII AGATCT 1 cut(s) 763
Bme1390I CCNGG 6 cut(s) 54, 671, 842, 1101, 1395, 1440
Bme18I GGWCC 5 cut(s) 458, 1190, 1232, 1642, 1900
BmeRI GACNNNNNGTC 1 cut(s) 311
BmeT110I CYCGRG 3 cut(s) 1503, 1552, 1612
BmgT120I GGNCC 5 cut(s) 458, 1190, 1232, 1642, 1900
BmiI GGNNCC 6 cut(s) 31, 1169, 1192, 1644, 1854, 1902
BmrFI CCNGG 6 cut(s) 54, 671, 842, 1101, 1395, 1440
BmsI GCATC 5 cut(s) 57, 394, 730, 979, 1454
BplI GAGNNNNNCTC 6 cut(s) 272, 304, 434, 466, 1631, 1663
BpmI CTGGAG 4 cut(s) 417, 1143, 1416, 1461
BpuEI CTTGAG 1 cut(s) 1808
BpuMI CCSGG 1 cut(s) 842
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 1 cut(s) 690
BsaI GGTCTC 3 cut(s) 292, 437, 1349
BsaJI CCNNGG 2 cut(s) 1099, 1112
Bsc4I CCNNNNNNNGG 6 cut(s) 322, 1199, 1520, 1569, 1629, 1909
Bse1I ACTGG 2 cut(s) 940, 1741
Bse21I CCTNAGG 1 cut(s) 321
Bse3DI GCAATG 2 cut(s) 381, 1888
Bse8I GATNNNNATC 1 cut(s) 690
BseBI CCWGG 5 cut(s) 54, 671, 1101, 1395, 1440
BseDI CCNNGG 2 cut(s) 1099, 1112
BseGI GGATG 4 cut(s) 585, 838, 1156, 1445
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 6 cut(s) 322, 1199, 1520, 1569, 1629, 1909
BseMI GCAATG 2 cut(s) 381, 1888
BseMII CTCAG 6 cut(s) 54, 141, 270, 336, 465, 758
BseNI ACTGG 2 cut(s) 940, 1741
BseRI GAGGAG 2 cut(s) 133, 144
BseYI CCCAGC 1 cut(s) 505
BshFI GGCC 5 cut(s) 319, 418, 837, 1740, 1814
BsiHKCI CYCGRG 3 cut(s) 1503, 1552, 1612
BsiSI CCGG 2 cut(s) 316, 842
BslFI GGGAC 4 cut(s) 795, 820, 1176, 1807
BslI CCNNNNNNNGG 6 cut(s) 322, 1199, 1520, 1569, 1629, 1909
BsmAI GTCTC 5 cut(s) 48, 292, 437, 1349, 1725
BsmFI GGGAC 4 cut(s) 795, 820, 1176, 1807
BsnI GGCC 5 cut(s) 319, 418, 837, 1740, 1814
Bso31I GGTCTC 3 cut(s) 292, 437, 1349
BsoBI CYCGRG 3 cut(s) 1503, 1552, 1612
Bsp1286I GDGCHC 1 cut(s) 1260
Bsp1407I TGTACA 1 cut(s) 232
BspACI CCGC 1 cut(s) 824
BspANI GGCC 5 cut(s) 319, 418, 837, 1740, 1814
BspCNI CTCAG 6 cut(s) 55, 142, 271, 337, 464, 759
BspLI GGNNCC 6 cut(s) 31, 1169, 1192, 1644, 1854, 1902
BspMAI CTGCAG 3 cut(s) 301, 1208, 1327
BspTNI GGTCTC 3 cut(s) 292, 437, 1349
BsrDI GCAATG 2 cut(s) 381, 1888
BsrGI TGTACA 1 cut(s) 232
BsrI ACTGG 2 cut(s) 940, 1741
BssECI CCNNGG 2 cut(s) 1099, 1112
Bst2UI CCWGG 5 cut(s) 54, 671, 1101, 1395, 1440
Bst4CI ACNGT 6 cut(s) 225, 522, 811, 850, 1086, 1897
Bst6I CTCTTC 1 cut(s) 1486
BstAUI TGTACA 1 cut(s) 232
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 8 cut(s) 63, 108, 150, 279, 321, 345, 451, 767
BstF5I GGATG 4 cut(s) 585, 838, 1156, 1445
BstMAI GTCTC 5 cut(s) 48, 292, 437, 1349, 1725
BstMWI GCNNNNNNNGC 2 cut(s) 1001, 1144
BstNI CCWGG 5 cut(s) 54, 671, 1101, 1395, 1440
BstNSI RCATGY 1 cut(s) 902
BstSCI CCNGG 6 cut(s) 52, 669, 840, 1099, 1393, 1438
BstSFI CTRYAG 4 cut(s) 81, 297, 1204, 1323
BstX2I RGATCY 8 cut(s) 29, 424, 532, 763, 1390, 1435, 1607, 1852
BstXI CCANNNNNNTGG 1 cut(s) 184
BstYI RGATCY 8 cut(s) 29, 424, 532, 763, 1390, 1435, 1607, 1852
Bsu36I CCTNAGG 1 cut(s) 321
BsuRI GGCC 5 cut(s) 319, 418, 837, 1740, 1814
BtgZI GCGATG 1 cut(s) 753
BtsCI GGATG 4 cut(s) 585, 838, 1156, 1445
BtsI GCAGTG 3 cut(s) 171, 294, 333
BtsIMutI CAGTG 4 cut(s) 171, 294, 333, 1902
Cac8I GCNNGC 1 cut(s) 12
Cfr13I GGNCC 5 cut(s) 458, 1190, 1232, 1642, 1900
Csp6I GTAC 4 cut(s) 233, 397, 512, 518
CviQI GTAC 4 cut(s) 233, 397, 512, 518
DdeI CTNAG 8 cut(s) 63, 108, 150, 279, 321, 345, 451, 767
DraI TTTAAA 2 cut(s) 589, 886
DriI GACNNNNNGTC 1 cut(s) 311
EaeI YGGCCR 2 cut(s) 416, 1738
Eam1104I CTCTTC 1 cut(s) 1486
Eam1105I GACNNNNNGTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 1486
Eco147I AGGCCT 1 cut(s) 1814
Eco24I GRGCYC 1 cut(s) 1260
Eco31I GGTCTC 3 cut(s) 292, 437, 1349
Eco47I GGWCC 5 cut(s) 458, 1190, 1232, 1642, 1900
Eco57I CTGAAG 2 cut(s) 857, 1062
Eco72I CACGTG 1 cut(s) 545
Eco81I CCTNAGG 1 cut(s) 321
Eco88I CYCGRG 3 cut(s) 1503, 1552, 1612
EcoO109I RGGNCCY 2 cut(s) 1190, 1642
EcoRI GAATTC 1 cut(s) 665
EcoRII CCWGG 5 cut(s) 52, 669, 1099, 1393, 1438
EcoT38I GRGCYC 1 cut(s) 1260
FaqI GGGAC 4 cut(s) 795, 820, 1176, 1807
FauNDI CATATG 1 cut(s) 1726
FbaI TGATCA 3 cut(s) 955, 972, 1021
FokI GGATG 4 cut(s) 592, 845, 1163, 1432
FriOI GRGCYC 1 cut(s) 1260
FspBI CTAG 5 cut(s) 291, 303, 1187, 1253, 1713
GsaI CCCAGC 1 cut(s) 509
GsuI CTGGAG 4 cut(s) 417, 1143, 1416, 1461
HaeIII GGCC 5 cut(s) 319, 418, 837, 1740, 1814
HapII CCGG 2 cut(s) 316, 842
HincII GTYRAC 1 cut(s) 923
HindII GTYRAC 1 cut(s) 923
HindIII AAGCTT 1 cut(s) 724
HpaII CCGG 2 cut(s) 316, 842
HphI GGTGA 3 cut(s) 695, 967, 1067
Hpy166II GTNNAC 4 cut(s) 397, 512, 923, 1900
Hpy188III TCNNGA 6 cut(s) 258, 434, 1040, 1122, 1776, 1856
Hpy8I GTNNAC 4 cut(s) 397, 512, 923, 1900
HpyAV CCTTC 7 cut(s) 318, 388, 727, 884, 898, 1128, 1871
HpyCH4III ACNGT 6 cut(s) 225, 522, 811, 850, 1086, 1897
HpyCH4IV ACGT 3 cut(s) 544, 1403, 1863
HpyF10VI GCNNNNNNNGC 2 cut(s) 1001, 1144
HpyF3I CTNAG 8 cut(s) 63, 108, 150, 279, 321, 345, 451, 767
HpySE526I ACGT 3 cut(s) 544, 1403, 1863
Ksp22I TGATCA 3 cut(s) 955, 972, 1021
LmnI GCTCC 4 cut(s) 929, 1167, 1397, 1442
LweI GCATC 5 cut(s) 57, 394, 730, 979, 1454
MaeI CTAG 5 cut(s) 291, 303, 1187, 1253, 1713
MaeII ACGT 3 cut(s) 544, 1403, 1863
MaeIII GTNAC 3 cut(s) 751, 1067, 1327
MboII GAAGA 5 cut(s) 113, 434, 571, 674, 1503
MflI RGATCY 8 cut(s) 29, 424, 532, 763, 1390, 1435, 1607, 1852
MhlI GDGCHC 1 cut(s) 1260
MlsI TGGCCA 2 cut(s) 418, 1740
MluCI AATT 8 cut(s) 38, 155, 178, 365, 665, 699, 1763, 1907
MluNI TGGCCA 2 cut(s) 418, 1740
Mox20I TGGCCA 2 cut(s) 418, 1740
MroXI GAANNNNTTC 1 cut(s) 1495
MscI TGGCCA 2 cut(s) 418, 1740
MseI TTAA 4 cut(s) 588, 606, 885, 948
Msp20I TGGCCA 2 cut(s) 418, 1740
MspA1I CMGCKG 1 cut(s) 505
MspI CCGG 2 cut(s) 316, 842
MspR9I CCNGG 6 cut(s) 54, 671, 842, 1101, 1395, 1440
MvaI CCWGG 5 cut(s) 54, 671, 1101, 1395, 1440
MwoI GCNNNNNNNGC 2 cut(s) 1001, 1144
NciI CCSGG 1 cut(s) 842
NdeI CATATG 1 cut(s) 1726
NlaIV GGNNCC 6 cut(s) 31, 1169, 1192, 1644, 1854, 1902
NmeAIII GCCGAG 1 cut(s) 1196
NmuCI GTSAC 1 cut(s) 1067
NspI RCATGY 1 cut(s) 902
PceI AGGCCT 1 cut(s) 1814
PdmI GAANNNNTTC 1 cut(s) 1495
PfeI GAWTC 8 cut(s) 104, 192, 244, 374, 1304, 1496, 1667, 1772
PflMI CCANNNNNTGG 2 cut(s) 1520, 1569
PfoI TCCNGGA 5 cut(s) 52, 669, 840, 1393, 1438
PmaCI CACGTG 1 cut(s) 545
PmlI CACGTG 1 cut(s) 545
Ppu21I YACGTR 1 cut(s) 545
PpuMI RGGWCCY 2 cut(s) 1190, 1642
Psp5II RGGWCCY 2 cut(s) 1190, 1642
Psp6I CCWGG 5 cut(s) 52, 669, 1099, 1393, 1438
PspCI CACGTG 1 cut(s) 545
PspFI CCCAGC 1 cut(s) 505
PspGI CCWGG 5 cut(s) 52, 669, 1099, 1393, 1438
PspN4I GGNNCC 6 cut(s) 31, 1169, 1192, 1644, 1854, 1902
PspPI GGNCC 5 cut(s) 458, 1190, 1232, 1642, 1900
PspPPI RGGWCCY 2 cut(s) 1190, 1642
PstI CTGCAG 3 cut(s) 301, 1208, 1327
PsuI RGATCY 8 cut(s) 29, 424, 532, 763, 1390, 1435, 1607, 1852
PvuII CAGCTG 1 cut(s) 505
RsaI GTAC 4 cut(s) 234, 398, 513, 519
RsaNI GTAC 4 cut(s) 233, 397, 512, 518
SaqAI TTAA 4 cut(s) 588, 606, 885, 948
Sau96I GGNCC 5 cut(s) 458, 1190, 1232, 1642, 1900
ScrFI CCNGG 6 cut(s) 54, 671, 842, 1101, 1395, 1440
SduI GDGCHC 1 cut(s) 1260
SfaNI GCATC 5 cut(s) 57, 394, 730, 979, 1454
SfcI CTRYAG 4 cut(s) 81, 297, 1204, 1323
SinI GGWCC 5 cut(s) 458, 1190, 1232, 1642, 1900
SmlI CTYRAG 1 cut(s) 1787
SmoI CTYRAG 1 cut(s) 1787
Sse9I AATT 8 cut(s) 38, 155, 178, 365, 665, 699, 1763, 1907
SseBI AGGCCT 1 cut(s) 1814
SsiI CCGC 1 cut(s) 824
SspMI CTAG 5 cut(s) 291, 303, 1187, 1253, 1713
StuI AGGCCT 1 cut(s) 1814
StyD4I CCNGG 6 cut(s) 52, 669, 840, 1099, 1393, 1438
TaaI ACNGT 6 cut(s) 225, 522, 811, 850, 1086, 1897
TaiI ACGT 3 cut(s) 547, 1406, 1866
TaqI TCGA 3 cut(s) 271, 402, 1105
TasI AATT 8 cut(s) 38, 155, 178, 365, 665, 699, 1763, 1907
TatI WGTACW 2 cut(s) 232, 517
TfiI GAWTC 8 cut(s) 104, 192, 244, 374, 1304, 1496, 1667, 1772
Tru1I TTAA 4 cut(s) 588, 606, 885, 948
Tru9I TTAA 4 cut(s) 588, 606, 885, 948
TscAI CASTG 4 cut(s) 178, 301, 333, 1902
TseFI GTSAC 1 cut(s) 1067
Tsp45I GTSAC 1 cut(s) 1067
TspGWI ACGGA 1 cut(s) 1172
TspRI CASTG 4 cut(s) 178, 301, 333, 1902
Van91I CCANNNNNTGG 2 cut(s) 1520, 1569
VpaK11BI GGWCC 5 cut(s) 458, 1190, 1232, 1642, 1900
XapI RAATTY 4 cut(s) 155, 365, 665, 1763
XceI RCATGY 1 cut(s) 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 1495
XspI CTAG 5 cut(s) 291, 303, 1187, 1253, 1713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.