Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002606

Physical Location & Seq

Genomic Coordinates Forward (+)

14581568 .. 14582483

Gene Structure 916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0107200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAATACAATGAGATATCCCACTTCAGCCACCCCCAACACAAGCTCAAGTTTGAGTACACAGAAATTCCATTCAAGTGCGATGGCTGCAAGGAAGTAGGCATAGGCTCGCGCTACAAGTGCGCCACATGCGACTTCGATCTTCACATGCACTGCGCCATACCCACTCCTTCCATCTTCCACCCTTTCTACACCAAGTGCTCCTTCCAGTTCCTCTCCCGAGCACCCGGGGACTCCCCGCGCTATTGCAATGCCTGCGAGAAGGACATAACCGGGTTCGTGTACCATTGCAGGTCCTGCGGGTTCGACCTCCACCCATGCTGTGCGAAGCTCCCCATGGTGCTGGACGATGGGGAGGTCAAGCTCTACCTGTATCGGAAAGTGAGCAGCTCCTGCCATAGGTGCGGGCGCAAAGGGCGGAGCTGGAGTTATAGGTCGAAATGCAAGAAGTACAATTTGCATGTGGCATGTGTGAAGGAAATGCTTGTGGAGAATTGGCATGAGTTTTTGGGGTCACATGGGAAGAGTAGTACTAGTAGGAGATTGGAGATGACTAGAATTCCTACCCTCAGGAATATGCTTCAGAGCCACCACCATAAGAGCAGAGGTAAAGTGAAGAAGTGTTGTGAGATGGCTGGGTTGGCCGTGCAGTTTGTGATATCGGCGGTGTTGGGTGATCCAACGACATTGATTGCTGGGGTTATTGGGTCATTGATGTCACGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KOW Spt5-NGN Spt5_N

Protein Analysis

242

Amino Acids

27.54

Weight (kDa)

9.18

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_2	PF03107	9 - 53	2.1e-10	C1 domain
C1_2	PF03107	72 - 109	3.3e-07	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08350
fragaria_vesca	FvH4_2g14770 FvH4_2g14770 FvH4_2g14770 FvH4_7g15891 FvH4_7g15900
malus_domestica	MD01G1075900.v1.1 MD05G1013100.v1.1 MD10G1013600.v1.1
prunus_persica	Prupe.2G047200_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1
pyrus_communis	pycom01g10480 pycom05g00760 pycom10g00830
rosa_chinensis	RchiOBHm_Chr1g0358771 RchiOBHm_Chr6g0277331
rosa_laevigata	RLG00000013309 RLG00000015056 RLG00000027924 RLG00000027930 RLG00000027931
rosa_multiflora	Rmu_co8026512.1_g000001 Rmu_sc0000030.1_g000027 Rmu_sc0017529.1_g000003 Rmu_sc0031713.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297640 Rroxscaffold_7G00191440
rosa_rugosa	Rorug01G0264800 Rorug01G0265100 Rorug06G0107200
rosa_samantha	Rh1AG279200 Rh1BG245800 Rh1CG263000 Rh1DG274100 Rh6BG222000 Rh6DG215000
rosa_wichuraiana	Rw1G024810 Rw6G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccII	CGCG	2 cut(s)	112, 241
AciI	CCGC	5 cut(s)	239, 300, 405, 418, 665
AclWI	GGATC	1 cut(s)	671
AcoI	YGGCCR	1 cut(s)	642
AcsI	RAATTY	2 cut(s)	66, 558
AcuI	CTGAAG	2 cut(s)	10, 566
AdeI	CACNNNGTG	1 cut(s)	198
AfaI	GTAC	4 cut(s)	59, 284, 452, 532
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	76
AhlI	ACTAGT	1 cut(s)	533
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AleI	CACNNNNGTG	1 cut(s)	724
AluBI	AGCT	5 cut(s)	46, 331, 364, 390, 423
AluI	AGCT	5 cut(s)	46, 331, 364, 390, 423
Alw21I	GWGCWC	2 cut(s)	203, 226
AlwI	GGATC	1 cut(s)	671
AlwNI	CAGNNNCTG	2 cut(s)	297, 393
Ama87I	CYCGRG	2 cut(s)	219, 227
AoxI	GGCC	1 cut(s)	642
ApeKI	GCWGC	2 cut(s)	87, 387
ApoI	RAATTY	2 cut(s)	66, 558
AspLEI	GCGC	5 cut(s)	114, 125, 158, 243, 411
AspS9I	GGNCC	1 cut(s)	294
AsuC2I	CCSGG	3 cut(s)	228, 229, 274
AsuHPI	GGTGA	1 cut(s)	686
AvaI	CYCGRG	2 cut(s)	219, 227
AvaII	GGWCC	1 cut(s)	294
AxyI	CCTNAGG	1 cut(s)	569
BauI	CACGAG	1 cut(s)	720
Bbv12I	GWGCWC	2 cut(s)	203, 226
BbvI	GCAGC	2 cut(s)	74, 399
BccI	CCATC	4 cut(s)	77, 182, 344, 625
BceAI	ACGGC	1 cut(s)	629
BcnI	CCSGG	3 cut(s)	228, 229, 274
BcuI	ACTAGT	1 cut(s)	533
BfaI	CTAG	2 cut(s)	534, 555
BfuAI	ACCTGC	1 cut(s)	282
BisI	GCNGC	2 cut(s)	88, 388
BlsI	GCNGC	2 cut(s)	89, 389
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	3 cut(s)	228, 229, 274
Bme18I	GGWCC	1 cut(s)	294
BmeT110I	CYCGRG	2 cut(s)	219, 227
BmgT120I	GGNCC	1 cut(s)	294
BmrFI	CCNGG	3 cut(s)	228, 229, 274
BpmI	CTGGAG	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	3 cut(s)	228, 229, 274
BsaJI	CCNNGG	3 cut(s)	227, 228, 336
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	208
Bse21I	CCTNAGG	1 cut(s)	569
Bse3DI	GCAATG	2 cut(s)	256, 286
BseDI	CCNNGG	3 cut(s)	227, 228, 336
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	2 cut(s)	256, 286
BseMII	CTCAG	1 cut(s)	583
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	2 cut(s)	74, 399
BseYI	CCCAGC	2 cut(s)	635, 695
BsgI	GTGCAG	1 cut(s)	668
Bsh1236I	CGCG	2 cut(s)	112, 241
BshFI	GGCC	1 cut(s)	644
BsiHKAI	GWGCWC	2 cut(s)	203, 226
BsiHKCI	CYCGRG	2 cut(s)	219, 227
BsiSI	CCGG	2 cut(s)	228, 273
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	399
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	644
BsoBI	CYCGRG	2 cut(s)	219, 227
Bsp1286I	GDGCHC	2 cut(s)	203, 226
Bsp143I	GATC	2 cut(s)	139, 676
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	5 cut(s)	239, 300, 405, 418, 665
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	1 cut(s)	582
BspFNI	CGCG	2 cut(s)	112, 241
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	671
BsrDI	GCAATG	2 cut(s)	256, 286
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	3 cut(s)	227, 228, 336
BssMI	GATC	2 cut(s)	139, 676
BssSI	CACGAG	1 cut(s)	720
BssT1I	CCWWGG	1 cut(s)	336
Bst2BI	CACGAG	1 cut(s)	720
Bst6I	CTCTTC	1 cut(s)	518
BstAPI	GCANNNNNTGC	3 cut(s)	255, 297, 393
BstC8I	GCNNGC	3 cut(s)	110, 256, 407
BstDEI	CTNAG	1 cut(s)	569
BstDSI	CCRYGG	1 cut(s)	336
BstENI	CCTNNNNNAGG	1 cut(s)	397
BstFNI	CGCG	2 cut(s)	112, 241
BstHHI	GCGC	5 cut(s)	114, 125, 158, 243, 411
BstKTI	GATC	2 cut(s)	142, 679
BstMBI	GATC	2 cut(s)	139, 676
BstMWI	GCNNNNNNNGC	9 cut(s)	87, 120, 129, 255, 297, 393, 402, 415, 641
BstNSI	RCATGY	4 cut(s)	132, 151, 464, 471
BstSCI	CCNGG	3 cut(s)	226, 227, 272
BstUI	CGCG	2 cut(s)	112, 241
BstV1I	GCAGC	2 cut(s)	74, 399
BstXI	CCANNNNNNTGG	1 cut(s)	343
Bsu36I	CCTNAGG	1 cut(s)	569
BsuRI	GGCC	1 cut(s)	644
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	151
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	110, 256, 407
CaiI	CAGNNNCTG	2 cut(s)	297, 393
CfoI	GCGC	5 cut(s)	114, 125, 158, 243, 411
Cfr13I	GGNCC	1 cut(s)	294
Cfr9I	CCCGGG	1 cut(s)	227
Csp6I	GTAC	4 cut(s)	58, 283, 451, 531
CviAII	CATG	8 cut(s)	129, 148, 318, 337, 461, 468, 500, 518
CviQI	GTAC	4 cut(s)	58, 283, 451, 531
DdeI	CTNAG	1 cut(s)	569
DpnI	GATC	2 cut(s)	141, 678
DpnII	GATC	2 cut(s)	139, 676
DraIII	CACNNNGTG	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	642
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
EciI	GGCGGA	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	336
Eco32I	GATATC	2 cut(s)	18, 660
Eco47I	GGWCC	1 cut(s)	294
Eco57I	CTGAAG	2 cut(s)	10, 566
Eco81I	CCTNAGG	1 cut(s)	569
Eco88I	CYCGRG	2 cut(s)	219, 227
EcoNI	CCTNNNNNAGG	1 cut(s)	397
EcoO109I	RGGNCCY	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	558
EcoRV	GATATC	2 cut(s)	18, 660
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	8 cut(s)	132, 151, 321, 340, 464, 471, 503, 521
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	8 cut(s)	128, 147, 317, 336, 460, 467, 499, 517
FauI	CCCGC	3 cut(s)	246, 293, 398
Fnu4HI	GCNGC	2 cut(s)	88, 388
Fsp4HI	GCNGC	2 cut(s)	88, 388
FspBI	CTAG	2 cut(s)	534, 555
GlaI	GCGC	5 cut(s)	113, 124, 157, 242, 410
GluI	GCNGC	2 cut(s)	88, 388
GsaI	CCCAGC	2 cut(s)	639, 699
GsuI	CTGGAG	1 cut(s)	445
HaeIII	GGCC	1 cut(s)	644
HapII	CCGG	2 cut(s)	228, 273
HhaI	GCGC	5 cut(s)	114, 125, 158, 243, 411
Hin1II	CATG	8 cut(s)	132, 151, 321, 340, 464, 471, 503, 521
Hin6I	GCGC	5 cut(s)	112, 123, 156, 241, 409
HinP1I	GCGC	5 cut(s)	112, 123, 156, 241, 409
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	2 cut(s)	228, 273
HphI	GGTGA	1 cut(s)	686
Hpy166II	GTNNAC	2 cut(s)	60, 283
Hpy188I	TCNGA	2 cut(s)	378, 585
Hpy188III	TCNNGA	3 cut(s)	219, 571, 720
Hpy8I	GTNNAC	2 cut(s)	60, 283
HpyAV	CCTTC	4 cut(s)	180, 214, 256, 469
HpyCH4V	TGCA	7 cut(s)	90, 151, 249, 291, 444, 460, 649
HpyF10VI	GCNNNNNNNGC	9 cut(s)	87, 120, 129, 255, 297, 393, 402, 415, 641
HpyF3I	CTNAG	1 cut(s)	569
Hsp92II	CATG	8 cut(s)	132, 151, 321, 340, 464, 471, 503, 521
HspAI	GCGC	5 cut(s)	112, 123, 156, 241, 409
Kzo9I	GATC	2 cut(s)	139, 676
LmnI	GCTCC	4 cut(s)	206, 336, 395, 420
Lsp1109I	GCAGC	2 cut(s)	74, 399
MaeI	CTAG	2 cut(s)	534, 555
MaeIII	GTNAC	2 cut(s)	513, 717
MalI	GATC	2 cut(s)	141, 678
MboI	GATC	2 cut(s)	139, 676
MboII	GAAGA	4 cut(s)	134, 169, 535, 628
MhlI	GDGCHC	2 cut(s)	203, 226
MluCI	AATT	4 cut(s)	66, 454, 493, 558
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	704
MnlI	CCTC	6 cut(s)	224, 320, 349, 578, 599, 716
MslI	CAYNNNNRTG	2 cut(s)	76, 724
MspI	CCGG	2 cut(s)	228, 273
MspR9I	CCNGG	3 cut(s)	228, 229, 274
MvnI	CGCG	2 cut(s)	112, 241
MwoI	GCNNNNNNNGC	9 cut(s)	87, 120, 129, 255, 297, 393, 402, 415, 641
NciI	CCSGG	3 cut(s)	228, 229, 274
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	2 cut(s)	139, 676
NlaIII	CATG	8 cut(s)	132, 151, 321, 340, 464, 471, 503, 521
NmuCI	GTSAC	2 cut(s)	513, 717
NspI	RCATGY	4 cut(s)	132, 151, 464, 471
OliI	CACNNNNGTG	1 cut(s)	724
PkrI	GCNGC	2 cut(s)	89, 389
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	294
PspFI	CCCAGC	2 cut(s)	635, 695
PspPI	GGNCC	1 cut(s)	294
PspPPI	RGGWCCY	1 cut(s)	294
PstNI	CAGNNNCTG	2 cut(s)	297, 393
RsaI	GTAC	4 cut(s)	59, 284, 452, 532
RsaNI	GTAC	4 cut(s)	58, 283, 451, 531
RseI	CAYNNNNRTG	2 cut(s)	76, 724
SatI	GCNGC	2 cut(s)	88, 388
Sau3AI	GATC	2 cut(s)	139, 676
Sau96I	GGNCC	1 cut(s)	294
ScaI	AGTACT	1 cut(s)	532
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	3 cut(s)	228, 229, 274
SduI	GDGCHC	2 cut(s)	203, 226
SinI	GGWCC	1 cut(s)	294
SmaI	CCCGGG	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	76, 724
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
SpeI	ACTAGT	1 cut(s)	533
Sse9I	AATT	4 cut(s)	66, 454, 493, 558
SsiI	CCGC	5 cut(s)	239, 300, 405, 418, 665
SspMI	CTAG	2 cut(s)	534, 555
StyD4I	CCNGG	3 cut(s)	226, 227, 272
StyI	CCWWGG	1 cut(s)	336
TaqI	TCGA	3 cut(s)	138, 306, 437
TasI	AATT	4 cut(s)	66, 454, 493, 558
TatI	WGTACW	3 cut(s)	57, 450, 530
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	513, 717
TseI	GCWGC	2 cut(s)	87, 387
Tsp45I	GTSAC	2 cut(s)	513, 717
TspDTI	ATGAA	1 cut(s)	17
TspMI	CCCGGG	1 cut(s)	227
TspRI	CASTG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	294
XagI	CCTNNNNNAGG	1 cut(s)	397
XapI	RAATTY	2 cut(s)	66, 558
XceI	RCATGY	4 cut(s)	132, 151, 464, 471
XmaI	CCCGGG	1 cut(s)	227
XspI	CTAG	2 cut(s)	534, 555
ZrmI	AGTACT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.