Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002606

Physical Location & Seq

Genomic Coordinates Reverse (-)

37249915 .. 37252512

Gene Structure 2598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG245800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGCAGCCAGAAGAAGAGGACGAAGAGCTCTACGAATACGAACCGGTTCGGCTTGGCTCGAATCGATTCGTAATCGTGGTCCTCCTCAATCTCCTTCTTCTCGCGGTTTTTCTCATTCTTATCCTTGGATTGGGCTTGGCGGCGTCATGCTTGGTAACCCTAGCCATGCCGAATCGGAGAGAGGATTATAAAGAAGAAGAGGAGAGCGAGATGCGGGAGGAGCGAAGGGCCAATTCGAAGCGGGGGAGATCGAATTCTGACGAGATTGAGATCCAGAAGCGGAGAGGGCGAGGGTCGAATTCGAAAAAGAGGAAATTGAAATCGGTTGCGGAGGAGGAGGAGGAGGAAGAAGGCGGTGGTGGAAGGTCTTTTAAGTCGATGTTTGTGGATGATGAGGCTATAGAGGATGAAGATGAGGATGAGGAGGAAGACGATGATGGTGAATTGGATGGGTTTATTGTTAATGAACCGGAGTTTGATAACGAACCTGATGAAGTTGATCATGATGGCGGCGGTGGGAGAAGGATGGGGTTTGTGTTGCCGGAGGAAGGAGAGGAGGAGGATATTGATGAGTTTGAAAGAAGGGTTCAAGACAGATTTAGGGATGTTCATGTGGAAGAATATGAGGATGATACGGAGGTTGGACAACAAGCTCTCATACCCGGTGTTAAGGACCCGAAATTGTGGTTGGTGAAGTGTGCCATTGGTAAAGAGAGAGGGGTAGCGGCTTGTCTAATGCAGAAGTGTATTGATAACCCTGGAGAATTGCAGATCATGTCTGCCATTGCTTTGGATCACTTGAAAAGCTTCATATATGTTGAAGCTTACAAAGAAGCCCATGTGAGGGAAGCTTGCAAAGGTCTGAGGTATGTAATTCTGCAGAAAATAATGCTTGTTCCTATTAAGGAGATGATTGATGTGCTATCATGTGAAAGCAAGAGCGTTGTAAATGATAAATGGGTTAGGATTAAGACGGGAGTATATAAAGGGGACCTTGCCAAGATTGTGGGGCATGTCCCGGGGAGACAGCAAGTTAGAGTAAAGTTAATTCCAAGGGTTGATTTACAAGCTCTTGCAAAAGGTGTAGAATCATCGAAGAAGAAGGAATCTGGTGCACGTCCTGATCGTGTTCCTGCACTTCTTAGGAACATGAACCTAGTTAGACAGCTGGGTGTACGAGTACAGTCCATGCGAGATCCATTGGCACGTGGTTATATTGAGAAGATTGATGGCTTATCTGGGATGATCTTTAAAGATGGTTTCCATCTTAAAGTTGTTTCTGATAAAAGTATAAAAGAGGCAAAACCCTCCTTGCAAGAACTTGAAGAATTCCAGGAACTTGATGGTGATGGAGATCATACAATTCCAAATAGAAAGAAAGGCGAAAGCTTTATGAAGGGCGATGCAGTTATTGTTACGGAGGGAGATCTGAGAAACTTGGTGGGACAGGTTGAGAAAGTTGAGTTAGGGACTGTTCATATCAAACCGGAAATGGATGGCCTCCCGGAAACTGTTGCCATCAATCAAACAGCACTTCAGAAATGCTTTAAAGAAGGGCAGCATGTGAAGGTTGTTAGTGGTAGTCAACAAGGAGCAACTGGCATGGTTGTTAAGGTTGATCAGCAGAAGCAGTTGATCACCATTTTATCTGATGCAACCAATGAAGCTATCTGTGTGTTCTCTGATCATGCTGTGGAGAGTCCTGAAGTGAATAATGGTGATACAATGGGCGACTCCCACTGCTTAAGGTATCACAAAATCCCTAGTCAAAGTCCGAGGTTTTTTGGAGGTGCAAGAAGGCATGATGGGCAGGATGGTTTTGGTAAAGGGAGCCGAGTAAAGTTCCGTCTAGGTCCCTATAAAGGCTGCAGGGGGCGTGTTGTGGAGGTTAAAGGATCAAATGTAAGGGTTGAACTAGAGTCCCAGATGAAAACTGTTGTTGTTGATCGTCTGCATTGTATTTCAGAATCAGGTAATGTTGCTGCTGCAGTTACAACACCATATCACTCTGGTTGTGAGACCCCAATGCCTTACATGAGGACTCCTATGAGAGATCCTGGAGCAACGTTAATGCCTTACATGACAACTCCCTTGAGAGATCCTGGAGCATCCCCAATGCGTTATATGACGACTCCTTACATGATGACTCCCAGAAGAGATCCCCCCCGAGCAACACCAATACATGGTGGCATGAGAACTCCACCTATGACTCCCATGAGAGATCCCCGAGCAACACCGATACATGGTGGCATGAGGACCCCTCCTATATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KOW Spt5-NGN Spt5_N

Protein Analysis

757

Amino Acids

84.77

Weight (kDa)

5.45

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Spt5-NGN	PF03439	227 - 308	2.1e-23	Early transcription elongation factor of RNA pol II, NGN section
KOW1_SPT5	PF23042	316 - 444	3.7e-27	Transcription elongation factor SPT5, KOW1 domain
KOW2_Spt5	PF23284	466 - 515	1.6e-16	Transcription elongation factor SPT5, second KOW domain
KOW5_SPT5	PF23290	610 - 650	2.5e-12	Transcription elongation factor SPT5, fifth KOW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08350
fragaria_vesca	FvH4_2g14770 FvH4_2g14770 FvH4_2g14770 FvH4_7g15891 FvH4_7g15900
malus_domestica	MD01G1075900.v1.1 MD05G1013100.v1.1 MD10G1013600.v1.1
prunus_persica	Prupe.2G047200_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1
pyrus_communis	pycom01g10480 pycom05g00760 pycom10g00830
rosa_chinensis	RchiOBHm_Chr1g0358771 RchiOBHm_Chr6g0277331
rosa_laevigata	RLG00000013309 RLG00000015056 RLG00000027924 RLG00000027930 RLG00000027931
rosa_multiflora	Rmu_co8026512.1_g000001 Rmu_sc0000030.1_g000027 Rmu_sc0017529.1_g000003 Rmu_sc0031713.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297640 Rroxscaffold_7G00191440
rosa_rugosa	Rorug01G0264800 Rorug01G0265100 Rorug06G0107200
rosa_samantha	Rh1AG279200 Rh1BG245800 Rh1CG263000 Rh1DG274100 Rh6BG222000 Rh6DG215000
rosa_wichuraiana	Rw1G024810 Rw6G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	189
AccB7I	CCANNNNNTGG	1 cut(s)	2183
AccII	CGCG	1 cut(s)	104
AclI	AACGTT	1 cut(s)	2066
AclWI	GGATC	8 cut(s)	265, 801, 1190, 1903, 2048, 2093, 2153, 2216
AcsI	RAATTY	3 cut(s)	253, 298, 1328
AcuI	CTGAAG	2 cut(s)	1520, 1725
AcvI	CACGTG	1 cut(s)	1208
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	2 cut(s)	1176, 1182
AfiI	CCNNNNNNNGG	7 cut(s)	130, 548, 843, 844, 1862, 2183, 2243
AflII	CTTAAG	1 cut(s)	1744
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	7 cut(s)	319, 578, 590, 802, 821, 1325, 1913
AjiI	CACGTC	1 cut(s)	1118
AjnI	CCWGG	4 cut(s)	757, 1332, 2056, 2101
AjuI	GAANNNNNNNTTGG	2 cut(s)	671, 703
AluBI	AGCT	9 cut(s)	28, 653, 807, 824, 851, 1070, 1168, 1389, 1667
AluI	AGCT	9 cut(s)	28, 653, 807, 824, 851, 1070, 1168, 1389, 1667
Alw21I	GWGCWC	2 cut(s)	30, 1117
Alw26I	GTCTC	2 cut(s)	1018, 2012
Alw44I	GTGCAC	1 cut(s)	1113
AlwI	GGATC	8 cut(s)	265, 801, 1190, 1903, 2048, 2093, 2153, 2216
Ama87I	CYCGRG	3 cut(s)	1018, 2166, 2226
AoxI	GGCC	2 cut(s)	228, 1498
ApaLI	GTGCAC	1 cut(s)	1113
ApeKI	GCWGC	5 cut(s)	4, 1558, 1866, 1982, 1985
ApoI	RAATTY	3 cut(s)	253, 298, 1328
AsiGI	ACCGGT	1 cut(s)	43
Asp700I	GAANNNNTTC	3 cut(s)	45, 65, 806
AspS9I	GGNCC	6 cut(s)	79, 228, 673, 991, 1853, 2256
AsuC2I	CCSGG	4 cut(s)	663, 1019, 1020, 1505
AsuHPI	GGTGA	5 cut(s)	452, 703, 1358, 1630, 1730
AsuII	TTCGAA	2 cut(s)	236, 302
AvaI	CYCGRG	3 cut(s)	1018, 2166, 2226
AvaII	GGWCC	5 cut(s)	79, 673, 991, 1853, 2256
BaeGI	GKGCMC	1 cut(s)	1117
BaeI	ACNNNNGTAYC	2 cut(s)	624, 657
BanII	GRGCYC	1 cut(s)	30
BbrPI	CACGTG	1 cut(s)	1208
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	2 cut(s)	30, 1117
BbvI	GCAGC	5 cut(s)	16, 1570, 1853, 1969, 1972
BciT130I	CCWGG	4 cut(s)	759, 1334, 2058, 2103
BclI	TGATCA	4 cut(s)	499, 1618, 1635, 1684
BcnI	CCSGG	4 cut(s)	663, 1019, 1020, 1505
BcoDI	GTCTC	2 cut(s)	1018, 2012
BfaI	CTAG	5 cut(s)	161, 1157, 1764, 1850, 1916
BfmI	CTRYAG	4 cut(s)	399, 878, 1867, 1986
BfrI	CTTAAG	1 cut(s)	1744
BglII	AGATCT	1 cut(s)	1426
BisI	GCNGC	8 cut(s)	5, 141, 511, 726, 1559, 1867, 1983, 1986
BlsI	GCNGC	8 cut(s)	6, 142, 512, 727, 1560, 1868, 1984, 1987
Bme1390I	CCNGG	8 cut(s)	663, 759, 1019, 1020, 1334, 1505, 2058, 2103
Bme18I	GGWCC	5 cut(s)	79, 673, 991, 1853, 2256
BmeT110I	CYCGRG	3 cut(s)	1018, 2166, 2226
BmgBI	CACGTC	1 cut(s)	1118
BmgT120I	GGNCC	6 cut(s)	79, 228, 673, 991, 1853, 2256
BmiI	GGNNCC	5 cut(s)	675, 992, 1832, 1855, 2258
BmrFI	CCNGG	8 cut(s)	663, 759, 1019, 1020, 1334, 1505, 2058, 2103
BmsI	GCATC	4 cut(s)	201, 1393, 1642, 2117
BpiI	GAAGAC	1 cut(s)	435
BplI	GAGNNNNNCTC	1 cut(s)	2245
BpmI	CTGGAG	3 cut(s)	780, 2079, 2124
Bpu14I	TTCGAA	2 cut(s)	236, 302
BpuEI	CTTGAG	1 cut(s)	2113
BpuMI	CCSGG	4 cut(s)	663, 1019, 1020, 1505
Bsa29I	ATCGAT	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	1208
BsaBI	GATNNNNATC	2 cut(s)	269, 1353
BsaHI	GRCGYC	1 cut(s)	143
BsaI	GGTCTC	1 cut(s)	2012
BsaJI	CCNNGG	6 cut(s)	124, 757, 1018, 1019, 1052, 1775
BsaWI	WCCGGW	3 cut(s)	43, 469, 1486
Bsc4I	CCNNNNNNNGG	7 cut(s)	130, 548, 843, 844, 1862, 2183, 2243
Bse118I	RCCGGY	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	1603
Bse3DI	GCAATG	1 cut(s)	783
Bse8I	GATNNNNATC	2 cut(s)	269, 1353
BseBI	CCWGG	4 cut(s)	759, 1334, 2058, 2103
BseCI	ATCGAT	1 cut(s)	64
BseDI	CCNNGG	6 cut(s)	124, 757, 1018, 1019, 1052, 1775
BseJI	GATNNNNATC	2 cut(s)	269, 1353
BseLI	CCNNNNNNNGG	7 cut(s)	130, 548, 843, 844, 1862, 2183, 2243
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	2 cut(s)	854, 1421
BseNI	ACTGG	1 cut(s)	1603
BseSI	GKGCMC	1 cut(s)	1117
BseXI	GCAGC	5 cut(s)	16, 1570, 1853, 1969, 1972
BseYI	CCCAGC	1 cut(s)	1168
BsgI	GTGCAG	1 cut(s)	1119
Bsh1236I	CGCG	1 cut(s)	104
BshFI	GGCC	2 cut(s)	230, 1500
BshTI	ACCGGT	1 cut(s)	43
BshVI	ATCGAT	1 cut(s)	64
BsiHKAI	GWGCWC	2 cut(s)	30, 1117
BsiHKCI	CYCGRG	3 cut(s)	1018, 2166, 2226
BsiSI	CCGG	7 cut(s)	44, 470, 542, 663, 1019, 1487, 1505
BslFI	GGGAC	6 cut(s)	1001, 1004, 1458, 1483, 1839, 1906
BslI	CCNNNNNNNGG	7 cut(s)	130, 548, 843, 844, 1862, 2183, 2243
BsmAI	GTCTC	2 cut(s)	1018, 2012
BsmFI	GGGAC	6 cut(s)	1001, 1004, 1458, 1483, 1839, 1906
BsnI	GGCC	2 cut(s)	230, 1500
Bso31I	GGTCTC	1 cut(s)	2012
BsoBI	CYCGRG	3 cut(s)	1018, 2166, 2226
Bsp119I	TTCGAA	2 cut(s)	236, 302
Bsp1286I	GDGCHC	2 cut(s)	30, 1117
BspANI	GGCC	2 cut(s)	230, 1500
BspCNI	CTCAG	2 cut(s)	855, 1422
BspDI	ATCGAT	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	104
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	5 cut(s)	675, 992, 1832, 1855, 2258
BspMAI	CTGCAG	3 cut(s)	882, 1871, 1990
BspPI	GGATC	8 cut(s)	265, 801, 1190, 1903, 2048, 2093, 2153, 2216
BspQI	GCTCTTC	1 cut(s)	18
BspT104I	TTCGAA	2 cut(s)	236, 302
BspTI	CTTAAG	1 cut(s)	1744
BspTNI	GGTCTC	1 cut(s)	2012
BsrDI	GCAATG	1 cut(s)	783
BsrFI	RCCGGY	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	1603
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	6 cut(s)	124, 757, 1018, 1019, 1052, 1775
BssNI	GRCGYC	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	124, 1052
Bst2UI	CCWGG	4 cut(s)	759, 1334, 2058, 2103
Bst4CI	ACNGT	4 cut(s)	1185, 1474, 1513, 1936
Bst6I	CTCTTC	4 cut(s)	9, 18, 192, 2149
BstACI	GRCGYC	1 cut(s)	143
BstAFI	CTTAAG	1 cut(s)	1744
BstBAI	YACGTR	1 cut(s)	1208
BstBI	TTCGAA	2 cut(s)	236, 302
BstC8I	GCNNGC	1 cut(s)	853
BstDEI	CTNAG	3 cut(s)	863, 1142, 1430
BstEII	GGTNACC	1 cut(s)	154
BstFNI	CGCG	1 cut(s)	104
BstMAI	GTCTC	2 cut(s)	1018, 2012
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 286, 1807
BstNI	CCWGG	4 cut(s)	759, 1334, 2058, 2103
BstNSI	RCATGY	2 cut(s)	1016, 1565
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	8 cut(s)	661, 757, 1017, 1018, 1332, 1503, 2056, 2101
BstSFI	CTRYAG	4 cut(s)	399, 878, 1867, 1986
BstSLI	GKGCMC	1 cut(s)	1117
BstUI	CGCG	1 cut(s)	104
BstV1I	GCAGC	5 cut(s)	16, 1570, 1853, 1969, 1972
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	7 cut(s)	270, 1195, 1426, 2053, 2098, 2158, 2221
BstXI	CCANNNNNNTGG	2 cut(s)	790, 1006
BstYI	RGATCY	7 cut(s)	270, 1195, 1426, 2053, 2098, 2158, 2221
Bsu15I	ATCGAT	1 cut(s)	64
BsuRI	GGCC	2 cut(s)	230, 1500
BsuTUI	ATCGAT	1 cut(s)	64
BtgZI	GCGATG	1 cut(s)	1416
BtrI	CACGTC	1 cut(s)	1118
BtsI	GCAGTG	1 cut(s)	1738
BtsIMutI	CAGTG	1 cut(s)	1738
Cac8I	GCNNGC	1 cut(s)	853
CciI	TCATGA	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	6 cut(s)	79, 228, 673, 991, 1853, 2256
Cfr9I	CCCGGG	1 cut(s)	1018
ClaI	ATCGAT	1 cut(s)	64
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	1175, 1181
CspAI	ACCGGT	1 cut(s)	43
CviQI	GTAC	2 cut(s)	1175, 1181
DdeI	CTNAG	3 cut(s)	863, 1142, 1430
DraI	TTTAAA	2 cut(s)	1252, 1549
Eam1104I	CTCTTC	4 cut(s)	9, 18, 192, 2149
EarI	CTCTTC	4 cut(s)	9, 18, 192, 2149
Ecl136II	GAGCTC	1 cut(s)	28
Eco130I	CCWWGG	2 cut(s)	124, 1052
Eco24I	GRGCYC	1 cut(s)	30
Eco31I	GGTCTC	1 cut(s)	2012
Eco47I	GGWCC	5 cut(s)	79, 673, 991, 1853, 2256
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	2 cut(s)	1520, 1725
Eco72I	CACGTG	1 cut(s)	1208
Eco88I	CYCGRG	3 cut(s)	1018, 2166, 2226
Eco91I	GGTNACC	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	28
EcoO109I	RGGNCCY	4 cut(s)	673, 991, 1853, 2256
EcoO65I	GGTNACC	1 cut(s)	154
EcoRI	GAATTC	3 cut(s)	253, 298, 1328
EcoRII	CCWGG	4 cut(s)	757, 1332, 2056, 2101
EcoT14I	CCWWGG	2 cut(s)	124, 1052
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	2 cut(s)	124, 1052
FalI	AAGNNNNNCTT	2 cut(s)	978, 1010
FaqI	GGGAC	6 cut(s)	1001, 1004, 1458, 1483, 1839, 1906
FauI	CCCGC	2 cut(s)	207, 234
FbaI	TGATCA	4 cut(s)	499, 1618, 1635, 1684
Fnu4HI	GCNGC	8 cut(s)	5, 141, 511, 726, 1559, 1867, 1983, 1986
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	8 cut(s)	5, 141, 511, 726, 1559, 1867, 1983, 1986
FspBI	CTAG	5 cut(s)	161, 1157, 1764, 1850, 1916
GluI	GCNGC	8 cut(s)	5, 141, 511, 726, 1559, 1867, 1983, 1986
GsaI	CCCAGC	1 cut(s)	1172
GsuI	CTGGAG	3 cut(s)	780, 2079, 2124
HaeIII	GGCC	2 cut(s)	230, 1500
HapII	CCGG	7 cut(s)	44, 470, 542, 663, 1019, 1487, 1505
HgaI	GACGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	143
HincII	GTYRAC	1 cut(s)	1586
HindII	GTYRAC	1 cut(s)	1586
HindIII	AAGCTT	4 cut(s)	805, 822, 849, 1387
HpaII	CCGG	7 cut(s)	44, 470, 542, 663, 1019, 1487, 1505
HphI	GGTGA	5 cut(s)	452, 703, 1358, 1630, 1730
Hpy166II	GTNNAC	3 cut(s)	1115, 1175, 1586
Hpy188III	TCNNGA	5 cut(s)	274, 503, 590, 1121, 1703
Hpy8I	GTNNAC	3 cut(s)	1115, 1175, 1586
HpyCH4III	ACNGT	4 cut(s)	1185, 1474, 1513, 1936
HpyCH4IV	ACGT	3 cut(s)	1117, 1207, 2066
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 286, 1807
HpyF3I	CTNAG	3 cut(s)	863, 1142, 1430
HpySE526I	ACGT	3 cut(s)	1117, 1207, 2066
Hsp92I	GRCGYC	1 cut(s)	143
Ksp22I	TGATCA	4 cut(s)	499, 1618, 1635, 1684
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	5 cut(s)	220, 1592, 1830, 2060, 2105
Lsp1109I	GCAGC	5 cut(s)	16, 1570, 1853, 1969, 1972
LweI	GCATC	4 cut(s)	201, 1393, 1642, 2117
MaeI	CTAG	5 cut(s)	161, 1157, 1764, 1850, 1916
MaeII	ACGT	3 cut(s)	1117, 1207, 2066
MaeIII	GTNAC	3 cut(s)	154, 1414, 1990
MflI	RGATCY	7 cut(s)	270, 1195, 1426, 2053, 2098, 2158, 2221
MhlI	GDGCHC	2 cut(s)	30, 1117
MlyI	GAGTC	7 cut(s)	1708, 1727, 1928, 2035, 2125, 2140, 2203
MmeI	TCCRAC	1 cut(s)	622
MroXI	GAANNNNTTC	3 cut(s)	45, 65, 806
MspA1I	CMGCKG	1 cut(s)	1168
MspCI	CTTAAG	1 cut(s)	1744
MspI	CCGG	7 cut(s)	44, 470, 542, 663, 1019, 1487, 1505
MspR9I	CCNGG	8 cut(s)	663, 759, 1019, 1020, 1334, 1505, 2058, 2103
MvaI	CCWGG	4 cut(s)	759, 1334, 2058, 2103
MvnI	CGCG	1 cut(s)	104
MwoI	GCNNNNNNNGC	3 cut(s)	220, 286, 1807
NciI	CCSGG	4 cut(s)	663, 1019, 1020, 1505
NlaIV	GGNNCC	5 cut(s)	675, 992, 1832, 1855, 2258
NmeAIII	GCCGAG	1 cut(s)	1859
NspI	RCATGY	2 cut(s)	1016, 1565
NspV	TTCGAA	2 cut(s)	236, 302
PagI	TCATGA	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	1123
PdmI	GAANNNNTTC	3 cut(s)	45, 65, 806
PfeI	GAWTC	6 cut(s)	61, 66, 172, 1088, 1106, 1967
PflMI	CCANNNNNTGG	1 cut(s)	2183
PfoI	TCCNGGA	4 cut(s)	1332, 1503, 2056, 2101
PinAI	ACCGGT	1 cut(s)	43
PkrI	GCNGC	8 cut(s)	6, 142, 512, 727, 1560, 1868, 1984, 1987
PleI	GAGTC	7 cut(s)	1707, 1727, 1927, 2035, 2125, 2140, 2203
PmaCI	CACGTG	1 cut(s)	1208
PmlI	CACGTG	1 cut(s)	1208
PpsI	GAGTC	7 cut(s)	1707, 1727, 1927, 2035, 2125, 2140, 2203
Ppu21I	YACGTR	1 cut(s)	1208
PpuMI	RGGWCCY	4 cut(s)	673, 991, 1853, 2256
PsiI	TTATAA	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	30
Psp1406I	AACGTT	1 cut(s)	2066
Psp5II	RGGWCCY	4 cut(s)	673, 991, 1853, 2256
Psp6I	CCWGG	4 cut(s)	757, 1332, 2056, 2101
PspCI	CACGTG	1 cut(s)	1208
PspEI	GGTNACC	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	1168
PspGI	CCWGG	4 cut(s)	757, 1332, 2056, 2101
PspN4I	GGNNCC	5 cut(s)	675, 992, 1832, 1855, 2258
PspPI	GGNCC	6 cut(s)	79, 228, 673, 991, 1853, 2256
PspPPI	RGGWCCY	4 cut(s)	673, 991, 1853, 2256
PstI	CTGCAG	3 cut(s)	882, 1871, 1990
PsuI	RGATCY	7 cut(s)	270, 1195, 1426, 2053, 2098, 2158, 2221
PvuII	CAGCTG	1 cut(s)	1168
RsaI	GTAC	2 cut(s)	1176, 1182
RsaNI	GTAC	2 cut(s)	1175, 1181
SacI	GAGCTC	1 cut(s)	30
SapI	GCTCTTC	1 cut(s)	18
SatI	GCNGC	8 cut(s)	5, 141, 511, 726, 1559, 1867, 1983, 1986
Sau96I	GGNCC	6 cut(s)	79, 228, 673, 991, 1853, 2256
SchI	GAGTC	7 cut(s)	1708, 1727, 1928, 2035, 2125, 2140, 2203
ScrFI	CCNGG	8 cut(s)	663, 759, 1019, 1020, 1334, 1505, 2058, 2103
SduI	GDGCHC	2 cut(s)	30, 1117
SfaNI	GCATC	4 cut(s)	201, 1393, 1642, 2117
SfcI	CTRYAG	4 cut(s)	399, 878, 1867, 1986
SfuI	TTCGAA	2 cut(s)	236, 302
SinI	GGWCC	5 cut(s)	79, 673, 991, 1853, 2256
SmaI	CCCGGG	1 cut(s)	1020
SmlI	CTYRAG	2 cut(s)	1744, 2092
SmoI	CTYRAG	2 cut(s)	1744, 2092
SspMI	CTAG	5 cut(s)	161, 1157, 1764, 1850, 1916
SstI	GAGCTC	1 cut(s)	30
StyD4I	CCNGG	8 cut(s)	661, 757, 1017, 1018, 1332, 1503, 2056, 2101
StyI	CCWWGG	2 cut(s)	124, 1052
TaaI	ACNGT	4 cut(s)	1185, 1474, 1513, 1936
TaiI	ACGT	3 cut(s)	1120, 1210, 2069
TaqI	TCGA	8 cut(s)	59, 64, 236, 251, 296, 302, 377, 1094
TatI	WGTACW	1 cut(s)	1180
TauI	GCSGC	3 cut(s)	143, 513, 728
TfiI	GAWTC	6 cut(s)	61, 66, 172, 1088, 1106, 1967
TscAI	CASTG	1 cut(s)	1745
TseI	GCWGC	5 cut(s)	4, 1558, 1866, 1982, 1985
TspGWI	ACGGA	3 cut(s)	650, 1433, 1835
TspMI	CCCGGG	1 cut(s)	1018
TspRI	CASTG	1 cut(s)	1745
Van91I	CCANNNNNTGG	1 cut(s)	2183
Vha464I	CTTAAG	1 cut(s)	1744
VneI	GTGCAC	1 cut(s)	1113
VpaK11BI	GGWCC	5 cut(s)	79, 673, 991, 1853, 2256
XapI	RAATTY	3 cut(s)	253, 298, 1328
XceI	RCATGY	2 cut(s)	1016, 1565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1340
XmaI	CCCGGG	1 cut(s)	1018
XmnI	GAANNNNTTC	3 cut(s)	45, 65, 806
XspI	CTAG	5 cut(s)	161, 1157, 1764, 1850, 1916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.