Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002606

Physical Location & Seq

Genomic Coordinates Reverse (-)

37638815 .. 37706609

Gene Structure 67795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0265100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGTTCACCAACCAGAGCAAATGCATCTGCAGTTTGGCATTGGTCCTCATGTTGGCGGCTTGGTCTTCGGAAGCCACTTCTCGTAGTCTCCAAGATGCATTAGCTTATGGGAGGTACGAGCAATGGATAGCTCGTTATGGACGTGTATATAATGACATCAACGAGAAGGAGGAGCGCTTCAAGATATTCAAGGACAATGAGGCATTTGTAGAATCTTCCAACAAAGATGGAAACAAACTTTACAAATTGACTATGAATCAATTTGCAGACCTTACAAATGAAGAGTTCACTGCCTCAAGAAATGGATTCAAGGGCCACGAATGTTCCACGAAAACCACTACTTTCAAGTATGAAAATTCTACTGTGCCGGCTACAATGGACTGGAGAAAAAAGGGAGCTGTAACTCCCGTCAAGGATCAAGGCCAATGTGGAAGTTGTTGGGCATTCTCAGCAGTGGGAGCTATGGAAGGAATCACTCAACTTACAACTGGTAAACTAATCTCTTTGTCTGAGCAAGAGCTTGTTGACTGTGATGTCAAAGGTGTAGACCAAGGCTGTGCAGGTGGCCTTATGGATGATGCCTTTCAGTTCGTTATTCAAAATCATGGTATTAATACCGAGGCTAATTATCCCTACACGGCTGCCGATGGTACATGCAATGCCAAGAAGGAAGCAGGCCATGCAGCCACAATAACTGGCCACGAAGATGTGCCTGCAAACAGCGAAAGTGCCCTTCTTAAGGCCGTGGCTAATCAACCTATCTCTGTTGCTATTGATGCTAGTGGATCTGACTTCCAGTTCTATTCAAGTGGTGTTTTCACAGGAACATGTGGAACGGGTCTAGACCATGGTGTTACCGCTGTTGGTTATGGTGTGAGTGCTGATGGGACAAAGTACTGGTTGGTAAAGAACTCATGGGGTGCACAATGGGGTGAAGAAGGTTACATAAGAATGCAAAGAGATGTTGCTGCACCGGAAGGTCTGTGTGGTATTGCCATGGAAGCCTCTTACCCCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KOW Spt5-NGN Spt5_N

Protein Analysis

341

Amino Acids

36.93

Weight (kDa)

4.9

Isoelectric Point (pI)

18.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 97	2e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	123 - 340	4e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08350
fragaria_vesca	FvH4_2g14770 FvH4_2g14770 FvH4_2g14770 FvH4_7g15891 FvH4_7g15900
malus_domestica	MD01G1075900.v1.1 MD05G1013100.v1.1 MD10G1013600.v1.1
prunus_persica	Prupe.2G047200_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1
pyrus_communis	pycom01g10480 pycom05g00760 pycom10g00830
rosa_chinensis	RchiOBHm_Chr1g0358771 RchiOBHm_Chr6g0277331
rosa_laevigata	RLG00000013309 RLG00000015056 RLG00000027924 RLG00000027930 RLG00000027931
rosa_multiflora	Rmu_co8026512.1_g000001 Rmu_sc0000030.1_g000027 Rmu_sc0017529.1_g000003 Rmu_sc0031713.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297640 Rroxscaffold_7G00191440
rosa_rugosa	Rorug01G0264800 Rorug01G0265100 Rorug06G0107200
rosa_samantha	Rh1AG279200 Rh1BG245800 Rh1CG263000 Rh1DG274100 Rh6BG222000 Rh6DG215000
rosa_wichuraiana	Rw1G024810 Rw6G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	554
AasI	GACNNNNNNGTC	1 cut(s)	536
Acc36I	ACCTGC	1 cut(s)	554
AccI	GTMKAC	1 cut(s)	549
AciI	CCGC	2 cut(s)	59, 861
AclWI	GGATC	2 cut(s)	426, 796
AcoI	YGGCCR	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	3 cut(s)	119, 655, 899
AfeI	AGCGCT	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	55, 742
AflII	CTTAAG	1 cut(s)	740
AflIII	ACRYGT	2 cut(s)	145, 830
AgsI	TTSAA	6 cut(s)	184, 193, 313, 349, 602, 810
AjiI	CACGTC	1 cut(s)	146
AluBI	AGCT	5 cut(s)	107, 134, 401, 464, 523
AluI	AGCT	5 cut(s)	107, 134, 401, 464, 523
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	1 cut(s)	95
Alw44I	GTGCAC	1 cut(s)	924
AlwI	GGATC	2 cut(s)	426, 796
Aor51HI	AGCGCT	1 cut(s)	179
AoxI	GGCC	6 cut(s)	316, 424, 568, 679, 700, 744
ApaLI	GTGCAC	1 cut(s)	924
ApeKI	GCWGC	3 cut(s)	644, 686, 971
ApoI	RAATTY	1 cut(s)	358
AseI	ATTAAT	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	46, 316
AsuHPI	GGTGA	1 cut(s)	947
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	2 cut(s)	736, 928
BalI	TGGCCA	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	928
BbvI	GCAGC	3 cut(s)	631, 698, 958
BccI	CCATC	3 cut(s)	224, 644, 881
BceAI	ACGGC	2 cut(s)	657, 731
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	2 cut(s)	783, 845
BfmI	CTRYAG	1 cut(s)	31
BfoI	RGCGCY	1 cut(s)	181
BfrI	CTTAAG	1 cut(s)	740
BfuAI	ACCTGC	1 cut(s)	554
BisI	GCNGC	4 cut(s)	60, 645, 687, 972
BlsI	GCNGC	4 cut(s)	61, 646, 688, 973
BmcAI	AGTACT	1 cut(s)	899
Bme18I	GGWCC	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	146
BmgT120I	GGNCC	2 cut(s)	46, 316
BmsI	GCATC	4 cut(s)	36, 88, 571, 769
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	283
BsaJI	CCNNGG	5 cut(s)	553, 621, 747, 850, 999
BsaWI	WCCGGW	1 cut(s)	976
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 742
Bse118I	RCCGGY	1 cut(s)	370
Bse1I	ACTGG	5 cut(s)	389, 496, 703, 799, 905
Bse3DI	GCAATG	2 cut(s)	131, 667
BseDI	CCNNGG	5 cut(s)	553, 621, 747, 850, 999
BseGI	GGATG	1 cut(s)	583
BseLI	CCNNNNNNNGG	2 cut(s)	55, 742
BseMI	GCAATG	2 cut(s)	131, 667
BseMII	CTCAG	2 cut(s)	465, 504
BseNI	ACTGG	5 cut(s)	389, 496, 703, 799, 905
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	2 cut(s)	736, 928
BseXI	GCAGC	3 cut(s)	631, 698, 958
BsgI	GTGCAG	2 cut(s)	582, 957
BshFI	GGCC	6 cut(s)	318, 426, 570, 681, 702, 746
BsiHKAI	GWGCWC	1 cut(s)	928
BsiSI	CCGG	2 cut(s)	371, 977
BslFI	GGGAC	1 cut(s)	904
BslI	CCNNNNNNNGG	2 cut(s)	55, 742
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	904
BsmI	GAATGC	2 cut(s)	446, 960
BsnI	GGCC	6 cut(s)	318, 426, 570, 681, 702, 746
Bsp1286I	GDGCHC	2 cut(s)	736, 928
Bsp143I	GATC	2 cut(s)	418, 788
Bsp19I	CCATGG	2 cut(s)	850, 999
BspACI	CCGC	2 cut(s)	59, 861
BspANI	GGCC	6 cut(s)	318, 426, 570, 681, 702, 746
BspCNI	CTCAG	2 cut(s)	464, 505
BspMAI	CTGCAG	1 cut(s)	35
BspMI	ACCTGC	1 cut(s)	554
BspPI	GGATC	2 cut(s)	426, 796
BspTI	CTTAAG	1 cut(s)	740
BsrDI	GCAATG	2 cut(s)	131, 667
BsrFI	RCCGGY	1 cut(s)	370
BsrI	ACTGG	5 cut(s)	389, 496, 703, 799, 905
BssAI	RCCGGY	1 cut(s)	370
BssECI	CCNNGG	5 cut(s)	553, 621, 747, 850, 999
BssMI	GATC	2 cut(s)	418, 788
BssT1I	CCWWGG	3 cut(s)	553, 850, 999
Bst4CI	ACNGT	2 cut(s)	367, 533
Bst6I	CTCTTC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	740
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstC8I	GCNNGC	3 cut(s)	372, 679, 717
BstDEI	CTNAG	2 cut(s)	451, 513
BstDSI	CCRYGG	3 cut(s)	747, 850, 999
BstENI	CCTNNNNNAGG	1 cut(s)	740
BstF5I	GGATG	1 cut(s)	583
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	2 cut(s)	421, 791
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	2 cut(s)	418, 788
BstMWI	GCNNNNNNNGC	5 cut(s)	452, 461, 683, 779, 1004
BstNSI	RCATGY	2 cut(s)	660, 834
BstSFI	CTRYAG	1 cut(s)	31
BstSLI	GKGCMC	2 cut(s)	736, 928
BstV1I	GCAGC	3 cut(s)	631, 698, 958
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	788
BstYI	RGATCY	1 cut(s)	788
BsuRI	GGCC	6 cut(s)	318, 426, 570, 681, 702, 746
BtgI	CCRYGG	3 cut(s)	747, 850, 999
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	583
BtsI	GCAGTG	3 cut(s)	291, 462, 1017
BtsIMutI	CAGTG	3 cut(s)	291, 462, 1017
BveI	ACCTGC	1 cut(s)	554
Cac8I	GCNNGC	3 cut(s)	372, 679, 717
CfoI	GCGC	1 cut(s)	180
Cfr10I	RCCGGY	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	46, 316
Csp6I	GTAC	3 cut(s)	118, 654, 898
CviAII	CATG	8 cut(s)	52, 608, 657, 683, 831, 851, 918, 1000
CviQI	GTAC	3 cut(s)	118, 654, 898
DdeI	CTNAG	2 cut(s)	451, 513
DpnI	GATC	2 cut(s)	420, 790
DpnII	GATC	2 cut(s)	418, 788
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	1 cut(s)	700
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Eco130I	CCWWGG	3 cut(s)	553, 850, 999
Eco47I	GGWCC	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	740
EcoT14I	CCWWGG	3 cut(s)	553, 850, 999
EcoT22I	ATGCAT	2 cut(s)	29, 103
ErhI	CCWWGG	3 cut(s)	553, 850, 999
FaeI	CATG	8 cut(s)	55, 611, 660, 686, 834, 854, 921, 1003
FaqI	GGGAC	1 cut(s)	904
FatI	CATG	8 cut(s)	51, 607, 656, 682, 830, 850, 917, 999
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	4 cut(s)	60, 645, 687, 972
FokI	GGATG	1 cut(s)	590
Fsp4HI	GCNGC	4 cut(s)	60, 645, 687, 972
FspBI	CTAG	2 cut(s)	783, 845
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	4 cut(s)	60, 645, 687, 972
GsuI	CTGGAG	1 cut(s)	406
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	6 cut(s)	318, 426, 570, 681, 702, 746
HapII	CCGG	2 cut(s)	371, 977
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	8 cut(s)	55, 611, 660, 686, 834, 854, 921, 1003
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	4 cut(s)	215, 259, 309, 474
HpaII	CCGG	2 cut(s)	371, 977
HphI	GGTGA	1 cut(s)	947
Hpy166II	GTNNAC	6 cut(s)	9, 291, 497, 529, 550, 926
Hpy188I	TCNGA	3 cut(s)	73, 514, 793
Hpy188III	TCNNGA	3 cut(s)	184, 300, 845
Hpy8I	GTNNAC	6 cut(s)	9, 291, 497, 529, 550, 926
HpyAV	CCTTC	6 cut(s)	163, 464, 664, 746, 935, 974
HpyCH4III	ACNGT	2 cut(s)	367, 533
HpyCH4IV	ACGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	5 cut(s)	452, 461, 683, 779, 1004
HpyF3I	CTNAG	2 cut(s)	451, 513
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	8 cut(s)	55, 611, 660, 686, 834, 854, 921, 1003
HspAI	GCGC	1 cut(s)	178
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Kzo9I	GATC	2 cut(s)	418, 788
LmnI	GCTCC	3 cut(s)	175, 398, 461
Lsp1109I	GCAGC	3 cut(s)	631, 698, 958
LweI	GCATC	4 cut(s)	36, 88, 571, 769
MaeI	CTAG	2 cut(s)	783, 845
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	3 cut(s)	403, 856, 944
MalI	GATC	2 cut(s)	420, 790
MboI	GATC	2 cut(s)	418, 788
MboII	GAAGA	5 cut(s)	60, 210, 296, 719, 950
MflI	RGATCY	1 cut(s)	788
MhlI	GDGCHC	2 cut(s)	736, 928
MlsI	TGGCCA	1 cut(s)	702
MluCI	AATT	4 cut(s)	248, 263, 358, 628
MluNI	TGGCCA	1 cut(s)	702
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	7 cut(s)	59, 108, 166, 196, 307, 616, 1018
Mox20I	TGGCCA	1 cut(s)	702
Mph1103I	ATGCAT	2 cut(s)	29, 103
MroNI	GCCGGC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	3 cut(s)	615, 741, 1024
MslI	CAYNNNNRTG	2 cut(s)	708, 953
Msp20I	TGGCCA	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	863
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	2 cut(s)	371, 977
Mva1269I	GAATGC	2 cut(s)	446, 960
MwoI	GCNNNNNNNGC	5 cut(s)	452, 461, 683, 779, 1004
NaeI	GCCGGC	1 cut(s)	372
NcoI	CCATGG	2 cut(s)	850, 999
NdeII	GATC	2 cut(s)	418, 788
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	8 cut(s)	55, 611, 660, 686, 834, 854, 921, 1003
NsiI	ATGCAT	2 cut(s)	29, 103
NspI	RCATGY	2 cut(s)	660, 834
PaqCI	CACCTGC	1 cut(s)	554
PciI	ACATGT	1 cut(s)	830
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PctI	GAATGC	2 cut(s)	446, 960
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	4 cut(s)	215, 259, 309, 474
PkrI	GCNGC	4 cut(s)	61, 646, 688, 973
PscI	ACATGT	1 cut(s)	830
PshBI	ATTAAT	1 cut(s)	615
PspPI	GGNCC	2 cut(s)	46, 316
PstI	CTGCAG	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	788
RsaI	GTAC	3 cut(s)	119, 655, 899
RsaNI	GTAC	3 cut(s)	118, 654, 898
RseI	CAYNNNNRTG	2 cut(s)	708, 953
SaqAI	TTAA	3 cut(s)	615, 741, 1024
SatI	GCNGC	4 cut(s)	60, 645, 687, 972
Sau3AI	GATC	2 cut(s)	418, 788
Sau96I	GGNCC	2 cut(s)	46, 316
ScaI	AGTACT	1 cut(s)	899
SduI	GDGCHC	2 cut(s)	736, 928
SfaNI	GCATC	4 cut(s)	36, 88, 571, 769
SfcI	CTRYAG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	2 cut(s)	708, 953
SmlI	CTYRAG	2 cut(s)	298, 740
SmoI	CTYRAG	2 cut(s)	298, 740
Sse9I	AATT	4 cut(s)	248, 263, 358, 628
SsiI	CCGC	2 cut(s)	59, 861
SspMI	CTAG	2 cut(s)	783, 845
StyI	CCWWGG	3 cut(s)	553, 850, 999
TaaI	ACNGT	2 cut(s)	367, 533
TaiI	ACGT	1 cut(s)	148
TasI	AATT	4 cut(s)	248, 263, 358, 628
TatI	WGTACW	1 cut(s)	897
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	4 cut(s)	215, 259, 309, 474
Tru1I	TTAA	3 cut(s)	615, 741, 1024
Tru9I	TTAA	3 cut(s)	615, 741, 1024
TscAI	CASTG	3 cut(s)	298, 462, 1024
TseI	GCWGC	3 cut(s)	644, 686, 971
TspDTI	ATGAA	3 cut(s)	272, 297, 369
TspRI	CASTG	3 cut(s)	298, 462, 1024
Vha464I	CTTAAG	1 cut(s)	740
VneI	GTGCAC	1 cut(s)	924
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	615
XagI	CCTNNNNNAGG	1 cut(s)	740
XapI	RAATTY	1 cut(s)	358
XbaI	TCTAGA	1 cut(s)	844
XceI	RCATGY	2 cut(s)	660, 834
XmiI	GTMKAC	1 cut(s)	549
XspI	CTAG	2 cut(s)	783, 845
ZrmI	AGTACT	1 cut(s)	899
Zsp2I	ATGCAT	2 cut(s)	29, 103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.