Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8026512.1

Orthogroup ID

OG0002606

Physical Location & Seq

Genomic Coordinates Forward (+)

4 .. 543

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8026512.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgcagaagtgtattgatagtcctggagaattgcagatcatgtctgcaattgctttggatcacttgaaaagcttcatatatgttgaagcttacaaagaagcccatgtgagggaagcttgcaaaggtctgaggtatgtaattctgcagaaaataatgcttgttcctattaaagagatgattgatgtgctatcatgtgaaagcaagagcgttgtaaatgataaatgggttaggattaagacgggagtatataaaggggaccttgccaagattgtggggcacgtcccggggagacagcaagttagagtaaagttaattccaagggttgatttacaagctcttgcaaaaggtgtagaatcatcgaagaagaaggaatctggtgcacgtcctgatcgtgttcctgcacttcttaggaacatgaacctagttagacagctgggtgtacgagtacagtccatgcgtgatccattggcacgtggttatattgagaagattgatggcttatctgggatgatctttaaagatggtttccatcttaaagtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KOW Spt5-NGN Spt5_N

Protein Analysis

180

Amino Acids

20.25

Weight (kDa)

9.8

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08350
fragaria_vesca	FvH4_2g14770 FvH4_2g14770 FvH4_2g14770 FvH4_7g15891 FvH4_7g15900
malus_domestica	MD01G1075900.v1.1 MD05G1013100.v1.1 MD10G1013600.v1.1
prunus_persica	Prupe.2G047200_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1
pyrus_communis	pycom01g10480 pycom05g00760 pycom10g00830
rosa_chinensis	RchiOBHm_Chr1g0358771 RchiOBHm_Chr6g0277331
rosa_laevigata	RLG00000013309 RLG00000015056 RLG00000027924 RLG00000027930 RLG00000027931
rosa_multiflora	Rmu_co8026512.1_g000001 Rmu_sc0000030.1_g000027 Rmu_sc0017529.1_g000003 Rmu_sc0031713.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297640 Rroxscaffold_7G00191440
rosa_rugosa	Rorug01G0264800 Rorug01G0265100 Rorug06G0107200
rosa_samantha	Rh1AG279200 Rh1BG245800 Rh1CG263000 Rh1DG274100 Rh6BG222000 Rh6DG215000
rosa_wichuraiana	Rw1G024810 Rw6G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	66, 455
AcvI	CACGTG	1 cut(s)	473
AfaI	GTAC	2 cut(s)	441, 447
AfiI	CCNNNNNNNGG	2 cut(s)	108, 109
AgsI	TTSAA	2 cut(s)	67, 86
AjiI	CACGTC	2 cut(s)	280, 383
AjnI	CCWGG	1 cut(s)	22
AluBI	AGCT	5 cut(s)	72, 89, 116, 335, 433
AluI	AGCT	5 cut(s)	72, 89, 116, 335, 433
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	1 cut(s)	283
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	2 cut(s)	66, 455
Ama87I	CYCGRG	1 cut(s)	283
ApaLI	GTGCAC	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	256
AsuC2I	CCSGG	2 cut(s)	284, 285
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	256
BaeGI	GKGCMC	2 cut(s)	279, 382
BbrPI	CACGTG	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	382
BccI	CCATC	3 cut(s)	488, 515, 537
BciT130I	CCWGG	1 cut(s)	24
BcnI	CCSGG	2 cut(s)	284, 285
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	143
Bme1390I	CCNGG	3 cut(s)	24, 284, 285
Bme18I	GGWCC	1 cut(s)	256
BmeT110I	CYCGRG	1 cut(s)	283
BmgBI	CACGTC	2 cut(s)	280, 383
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	3 cut(s)	24, 284, 285
BpmI	CTGGAG	1 cut(s)	45
BpuMI	CCSGG	2 cut(s)	284, 285
BsaAI	YACGTR	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	283, 284, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 109
BseBI	CCWGG	1 cut(s)	24
BseDI	CCNNGG	3 cut(s)	283, 284, 317
BseGI	GGATG	1 cut(s)	513
BseLI	CCNNNNNNNGG	2 cut(s)	108, 109
BseMII	CTCAG	1 cut(s)	119
BseSI	GKGCMC	2 cut(s)	279, 382
BseYI	CCCAGC	1 cut(s)	433
BsgI	GTGCAG	1 cut(s)	384
BsiHKAI	GWGCWC	1 cut(s)	382
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	2 cut(s)	266, 269
BslI	CCNNNNNNNGG	2 cut(s)	108, 109
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	2 cut(s)	266, 269
BsoBI	CYCGRG	1 cut(s)	283
Bsp1286I	GDGCHC	2 cut(s)	279, 382
Bsp143I	GATC	5 cut(s)	36, 58, 388, 460, 510
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	257
BspMAI	CTGCAG	1 cut(s)	147
BspPI	GGATC	2 cut(s)	66, 455
BssECI	CCNNGG	3 cut(s)	283, 284, 317
BssMI	GATC	5 cut(s)	36, 58, 388, 460, 510
BssT1I	CCWWGG	1 cut(s)	317
Bst2UI	CCWGG	1 cut(s)	24
Bst4CI	ACNGT	1 cut(s)	450
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	128, 407
BstF5I	GGATG	1 cut(s)	513
BstKTI	GATC	5 cut(s)	39, 61, 391, 463, 513
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	5 cut(s)	36, 58, 388, 460, 510
BstNI	CCWGG	1 cut(s)	24
BstSCI	CCNGG	3 cut(s)	22, 282, 283
BstSFI	CTRYAG	1 cut(s)	143
BstSLI	GKGCMC	2 cut(s)	279, 382
BstXI	CCANNNNNNTGG	1 cut(s)	271
BtrI	CACGTC	2 cut(s)	280, 383
BtsCI	GGATG	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	256
Cfr9I	CCCGGG	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	440, 446
CviAII	CATG	5 cut(s)	40, 104, 192, 415, 454
CviJI	RGCY	7 cut(s)	72, 89, 101, 116, 335, 433, 498
CviKI_1	RGCY	7 cut(s)	72, 89, 101, 116, 335, 433, 498
CviQI	GTAC	2 cut(s)	440, 446
DdeI	CTNAG	2 cut(s)	128, 407
DpnI	GATC	5 cut(s)	38, 60, 390, 462, 512
DpnII	GATC	5 cut(s)	36, 58, 388, 460, 510
DraI	TTTAAA	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	256
Eco72I	CACGTG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	5 cut(s)	43, 107, 195, 418, 457
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FaqI	GGGAC	2 cut(s)	266, 269
FatI	CATG	5 cut(s)	39, 103, 191, 414, 453
FokI	GGATG	1 cut(s)	520
FspBI	CTAG	1 cut(s)	422
GsaI	CCCAGC	1 cut(s)	437
GsuI	CTGGAG	1 cut(s)	45
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	5 cut(s)	43, 107, 195, 418, 457
HindIII	AAGCTT	3 cut(s)	70, 87, 114
HinfI	GANTC	2 cut(s)	353, 371
HpaII	CCGG	1 cut(s)	284
Hpy166II	GTNNAC	2 cut(s)	380, 440
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	2 cut(s)	380, 440
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4IV	ACGT	3 cut(s)	279, 382, 472
HpyCH4V	TGCA	8 cut(s)	4, 34, 47, 120, 145, 341, 380, 401
HpyF3I	CTNAG	2 cut(s)	128, 407
HpySE526I	ACGT	3 cut(s)	279, 382, 472
Hsp92II	CATG	5 cut(s)	43, 107, 195, 418, 457
Kzo9I	GATC	5 cut(s)	36, 58, 388, 460, 510
LpnPI	CCDG	8 cut(s)	9, 36, 297, 360, 399, 411, 419, 489
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	3 cut(s)	279, 382, 472
MalI	GATC	5 cut(s)	38, 60, 390, 462, 512
MboI	GATC	5 cut(s)	36, 58, 388, 460, 510
MboII	GAAGA	3 cut(s)	373, 376, 499
MfeI	CAATTG	1 cut(s)	48
MhlI	GDGCHC	2 cut(s)	279, 382
MluCI	AATT	4 cut(s)	29, 48, 138, 312
MnlI	CCTC	2 cut(s)	102, 123
MroXI	GAANNNNTTC	1 cut(s)	71
MseI	TTAA	5 cut(s)	168, 234, 311, 516, 534
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	3 cut(s)	24, 284, 285
MunI	CAATTG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	24
NciI	CCSGG	2 cut(s)	284, 285
NdeII	GATC	5 cut(s)	36, 58, 388, 460, 510
NlaIII	CATG	5 cut(s)	43, 107, 195, 418, 457
NlaIV	GGNNCC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	2 cut(s)	353, 371
PfoI	TCCNGGA	1 cut(s)	22
PmaCI	CACGTG	1 cut(s)	473
PmlI	CACGTG	1 cut(s)	473
Ppu21I	YACGTR	1 cut(s)	473
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	22
PspCI	CACGTG	1 cut(s)	473
PspFI	CCCAGC	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	22
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	1 cut(s)	256
PspPPI	RGGWCCY	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	147
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	2 cut(s)	441, 447
RsaNI	GTAC	2 cut(s)	440, 446
SaqAI	TTAA	5 cut(s)	168, 234, 311, 516, 534
Sau3AI	GATC	5 cut(s)	36, 58, 388, 460, 510
Sau96I	GGNCC	1 cut(s)	256
ScrFI	CCNGG	3 cut(s)	24, 284, 285
SduI	GDGCHC	2 cut(s)	279, 382
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	256
SmaI	CCCGGG	1 cut(s)	285
Sse9I	AATT	4 cut(s)	29, 48, 138, 312
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	22, 282, 283
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	1 cut(s)	450
TaiI	ACGT	3 cut(s)	282, 385, 475
TaqI	TCGA	1 cut(s)	359
TasI	AATT	4 cut(s)	29, 48, 138, 312
TatI	WGTACW	1 cut(s)	445
TfiI	GAWTC	2 cut(s)	353, 371
Tru1I	TTAA	5 cut(s)	168, 234, 311, 516, 534
Tru9I	TTAA	5 cut(s)	168, 234, 311, 516, 534
TspDTI	ATGAA	2 cut(s)	64, 431
TspMI	CCCGGG	1 cut(s)	283
VneI	GTGCAC	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	256
XmaI	CCCGGG	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.