Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002606

Physical Location & Seq

Genomic Coordinates Reverse (-)

37608578 .. 37612408

Gene Structure 3831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0264800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGTAAGCTCACCATCCTTTCGTGAAAAAGGATGGAGGCCCTACAGTCCGAGCCCAAAAGATCCAAGCCCTACAGTCCTGAGAGGCCCAAGACTGTGCTGTCTCCTACCTACCGCCACTGCCGCCGTAAGCAGCAATCTTCGTGACAACCAGGTCAATCCAGCCTTGATCTGCCACCACATCGCGGCCACTCACTACGGCATCGAGAGGAAGGAGAGTTCCACGATCAGCGACGCTGCCGTCATAGGACCCCAATCTCACATCAAAGAGCTTGATGAACTGAAGCTTTTACAATATCTGTCTCATCAGAACATCGTGAGGTATTTGGGTACCGCTAGGGAGGAGGAAAGCTTGTATATTTGGTTGGAATTTGTCTCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016071 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032044 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KOW Spt5-NGN Spt5_N

Protein Analysis

127

Amino Acids

14.16

Weight (kDa)

6.96

Isoelectric Point (pI)

70.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08350
fragaria_vesca	FvH4_2g14770 FvH4_2g14770 FvH4_2g14770 FvH4_7g15891 FvH4_7g15900
malus_domestica	MD01G1075900.v1.1 MD05G1013100.v1.1 MD10G1013600.v1.1
prunus_persica	Prupe.2G047200_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1 Prupe.8G018000_v2.0.a1
pyrus_communis	pycom01g10480 pycom05g00760 pycom10g00830
rosa_chinensis	RchiOBHm_Chr1g0358771 RchiOBHm_Chr6g0277331
rosa_laevigata	RLG00000013309 RLG00000015056 RLG00000027924 RLG00000027930 RLG00000027931
rosa_multiflora	Rmu_co8026512.1_g000001 Rmu_sc0000030.1_g000027 Rmu_sc0017529.1_g000003 Rmu_sc0031713.1_g000002
rosa_roxburghii	Rroxscaffold_4G00297640 Rroxscaffold_7G00191440
rosa_rugosa	Rorug01G0264800 Rorug01G0265100 Rorug06G0107200
rosa_samantha	Rh1AG279200 Rh1BG245800 Rh1CG263000 Rh1DG274100 Rh6BG222000 Rh6DG215000
rosa_wichuraiana	Rw1G024810 Rw6G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	99, 152, 239
Acc65I	GGTACC	1 cut(s)	329
AccB1I	GGYRCC	1 cut(s)	329
AccII	CGCG	1 cut(s)	185
AciI	CCGC	4 cut(s)	114, 123, 185, 333
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	184
AjnI	CCWGG	1 cut(s)	150
AloI	GAACNNNNNNTCC	2 cut(s)	202, 234
AluBI	AGCT	4 cut(s)	9, 271, 286, 351
AluI	AGCT	4 cut(s)	9, 271, 286, 351
Alw26I	GTCTC	3 cut(s)	107, 306, 379
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	3 cut(s)	38, 85, 186
ApeKI	GCWGC	2 cut(s)	132, 236
ApoI	RAATTY	1 cut(s)	368
Asp718I	GGTACC	1 cut(s)	329
AspS9I	GGNCC	3 cut(s)	39, 86, 248
AsuHPI	GGTGA	1 cut(s)	3
AvaII	GGWCC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	56
BbvI	GCAGC	2 cut(s)	144, 223
BccI	CCATC	2 cut(s)	22, 27
BceAI	ACGGC	3 cut(s)	110, 214, 224
BciT130I	CCWGG	1 cut(s)	152
BcoDI	GTCTC	3 cut(s)	107, 306, 379
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	2 cut(s)	43, 72
BisI	GCNGC	4 cut(s)	123, 133, 186, 237
BlsI	GCNGC	4 cut(s)	124, 134, 187, 238
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	3 cut(s)	39, 86, 248
BmiI	GGNNCC	2 cut(s)	250, 331
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	152
BseGI	GGATG	2 cut(s)	14, 38
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	2 cut(s)	144, 223
Bsh1236I	CGCG	1 cut(s)	185
BshFI	GGCC	3 cut(s)	40, 87, 188
BshNI	GGYRCC	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	3 cut(s)	107, 306, 379
BsnI	GGCC	3 cut(s)	40, 87, 188
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp143I	GATC	3 cut(s)	61, 168, 225
BspACI	CCGC	4 cut(s)	114, 123, 185, 333
BspANI	GGCC	3 cut(s)	40, 87, 188
BspCNI	CTCAG	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	2 cut(s)	250, 331
BspPI	GGATC	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	329
BssMI	GATC	3 cut(s)	61, 168, 225
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	3 cut(s)	47, 76, 96
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	14, 38
BstFNI	CGCG	1 cut(s)	185
BstKTI	GATC	3 cut(s)	64, 171, 228
BstMAI	GTCTC	3 cut(s)	107, 306, 379
BstMBI	GATC	3 cut(s)	61, 168, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	2 cut(s)	43, 72
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	144, 223
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	3 cut(s)	40, 87, 188
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	14, 38
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	117
Cfr13I	GGNCC	3 cut(s)	39, 86, 248
CseI	GACGC	1 cut(s)	242
CsiI	ACCWGGT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	330
CviQI	GTAC	1 cut(s)	330
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	3 cut(s)	63, 170, 227
DpnII	GATC	3 cut(s)	61, 168, 225
DrdI	GACNNNNNNGTC	3 cut(s)	99, 152, 239
DseDI	GACNNNNNNGTC	3 cut(s)	99, 152, 239
EaeI	YGGCCR	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	302
EcoO109I	RGGNCCY	2 cut(s)	39, 248
EcoRII	CCWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	56
FaiI	YATR	2 cut(s)	245, 357
Fnu4HI	GCNGC	4 cut(s)	123, 133, 186, 237
FokI	GGATG	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	4 cut(s)	123, 133, 186, 237
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	4 cut(s)	123, 133, 186, 237
HaeIII	GGCC	3 cut(s)	40, 87, 188
HgaI	GACGC	1 cut(s)	242
HindIII	AAGCTT	2 cut(s)	284, 349
HphI	GGTGA	1 cut(s)	3
Hpy188I	TCNGA	2 cut(s)	51, 309
Hpy188III	TCNNGA	5 cut(s)	23, 79, 143, 205, 316
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	3 cut(s)	47, 76, 96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpyF3I	CTNAG	1 cut(s)	80
KpnI	GGTACC	1 cut(s)	333
Kzo9I	GATC	3 cut(s)	61, 168, 225
LpnPI	CCDG	5 cut(s)	92, 137, 164, 174, 363
Lsp1109I	GCAGC	2 cut(s)	144, 223
LweI	GCATC	1 cut(s)	210
MabI	ACCWGGT	1 cut(s)	150
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	3 cut(s)	63, 170, 227
MboI	GATC	3 cut(s)	61, 168, 225
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	6 cut(s)	30, 77, 201, 312, 334, 337
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	1 cut(s)	122
NdeII	GATC	3 cut(s)	61, 168, 225
NlaIV	GGNNCC	2 cut(s)	250, 331
NmuCI	GTSAC	1 cut(s)	143
PkrI	GCNGC	4 cut(s)	124, 134, 187, 238
PpuMI	RGGWCCY	1 cut(s)	248
Psp5II	RGGWCCY	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	250, 331
PspPI	GGNCC	3 cut(s)	39, 86, 248
PspPPI	RGGWCCY	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	1 cut(s)	331
RsaNI	GTAC	1 cut(s)	330
SatI	GCNGC	4 cut(s)	123, 133, 186, 237
Sau3AI	GATC	3 cut(s)	61, 168, 225
Sau96I	GGNCC	3 cut(s)	39, 86, 248
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	56
SetI	ASST	7 cut(s)	11, 112, 156, 273, 288, 323, 353
SexAI	ACCWGGT	1 cut(s)	150
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	2 cut(s)	43, 72
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	4 cut(s)	114, 123, 185, 333
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	3 cut(s)	47, 76, 96
TaqI	TCGA	1 cut(s)	204
TasI	AATT	1 cut(s)	368
TauI	GCSGC	2 cut(s)	125, 188
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	132, 236
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	368
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.