FvH4_7g23430

P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
18278370 .. 18278668
299 bp
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UTR
Exon/CDS
Intron
FvH4_7g23430.t1

Sequence Viewer

Length: 228 bp
ATGATTTTCTTGGTCTTAATTAACCAAGCTGTTGCCCTCATTATCAACCGATTGGTTTTTGGTACACATTCGCATGCAAGTGCTGTTGTTTCTCACAATGCAAGCTCAAGATTCAGTGATGGTGCTCGATTTGGACTTGGGGCAGAGGTAGGGATAAGCACAAGTCGAATTCATGCTCAGGGTCATGGACTACTGTTAACAACGAAATGGTATGAAGTGACTAGCTAA

Protein Analysis

76

Amino Acids

8.03

Weight (kDa)

9.97

Isoelectric Point (pI)

12.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 168
AfaI GTAC 1 cut(s) 64
AluBI AGCT 3 cut(s) 29, 105, 225
AluI AGCT 3 cut(s) 29, 105, 225
Alw21I GWGCWC 1 cut(s) 127
ApoI RAATTY 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 127
BccI CCATC 1 cut(s) 113
BfaI CTAG 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 190
Bst4CI ACNGT 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 75, 103
BstDEI CTNAG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 2 cut(s) 75, 103
Csp6I GTAC 1 cut(s) 63
CviAII CATG 3 cut(s) 74, 173, 185
CviJI RGCY 3 cut(s) 29, 105, 225
CviKI_1 RGCY 3 cut(s) 29, 105, 225
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 168
FaeI CATG 3 cut(s) 77, 176, 188
FaiI YATR 4 cut(s) 75, 174, 186, 213
FatI CATG 3 cut(s) 73, 172, 184
FspBI CTAG 1 cut(s) 222
Hin1II CATG 3 cut(s) 77, 176, 188
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 1 cut(s) 111
HpaI GTTAAC 1 cut(s) 198
Hpy166II GTNNAC 2 cut(s) 65, 198
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 2 cut(s) 65, 198
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 77, 101
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 3 cut(s) 77, 176, 188
KspAI GTTAAC 1 cut(s) 198
LpnPI CCDG 1 cut(s) 164
MaeI CTAG 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 18, 168
MnlI CCTC 2 cut(s) 47, 139
MseI TTAA 3 cut(s) 17, 21, 197
MslI CAYNNNNRTG 2 cut(s) 72, 78
NlaIII CATG 3 cut(s) 77, 176, 188
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 77
PacI TTAATTAA 1 cut(s) 21
PaeI GCATGC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 111
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
RseI CAYNNNNRTG 2 cut(s) 72, 78
SaqAI TTAA 3 cut(s) 17, 21, 197
SduI GDGCHC 1 cut(s) 127
SetI ASST 4 cut(s) 31, 107, 150, 227
SmiMI CAYNNNNRTG 2 cut(s) 72, 78
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
SphI GCATGC 1 cut(s) 77
Sse9I AATT 2 cut(s) 18, 168
SspMI CTAG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 127, 166
TasI AATT 2 cut(s) 18, 168
TfiI GAWTC 1 cut(s) 111
Tru1I TTAA 3 cut(s) 17, 21, 197
Tru9I TTAA 3 cut(s) 17, 21, 197
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 161, 228
TspRI CASTG 1 cut(s) 121
XapI RAATTY 1 cut(s) 168
XceI RCATGY 1 cut(s) 77
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.