Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000993

Physical Location & Seq

Genomic Coordinates Forward (+)

9248587 .. 9252574

Gene Structure 3988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAACTTTGAGATAATAACTGTTACTAAACTCAAAGATATTTGGCAGCTTGACGACAACCTGATCAATCTTCTGATCCCAAGAGGCAGCAACAAGCTGGTGTCTCAAATAAAGAGTTTGACCAAGATTCCAGTCCTGGGGCATGCTGGTGTGACTTTGTTTGGTGGACCGAGGGCAAGCTCCTTGCTCAATATTCCTCGGGCAGATTCATTGCATATTGAGTACAGTTACATGGCCCGCACTGTTGAGGTTGTCGATGAAGTTCATGCAGCCATTGAGCATATAAATAAAAACGGAAGTGCTGCTGTTTCTCACAATGCAAGCACAAGATTTAGCGATGGTGCTCGATTTGGACTTGGGGCAGAGGATCTTACTAAAGTCTCTATTGGCACAAGGCAAGGTAGAAGAGAACTAGTGAACTACCCTTGGGGTTTAGCTCTCTCCAACCTAGTGAAGGACCATTTGAAGAAGAAGTCAAGGAATGGATCAACATCAATAAACCCACACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

170

Amino Acids

18.67

Weight (kDa)

9.74

Isoelectric Point (pI)

31.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39800 AT2G39800 AT2G39800 AT2G39800 AT3G55610 AT3G55610
fragaria_vesca	FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_7g23420 FvH4_7g23420 FvH4_7g23420 FvH4_7g23430
malus_domestica	MD00G1141100.v1.1 MD01G1140200.v1.1 MD04G1136200.v1.1 MD07G1204500.v1.1 MD12G1150700.v1.1
prunus_persica	Prupe.2G240800_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1
pyrus_communis	pycom01g16070 pycom04g12400 pycom07g19110 pycom12g14450
rosa_chinensis	RchiOBHm_Chr1g0368541 RchiOBHm_Chr1g0368561 RchiOBHm_Chr3g0465091
rosa_laevigata	RLG00000024656 RLG00000027203 RLG00000027204
rosa_multiflora	Rmu_co8458369.1_g000001 Rmu_co8474891.1_g000001 Rmu_sc0003386.1_g000013 Rmu_sc0011394.1_g000007
rosa_roxburghii	Rroxscaffold_4G00288440 Rroxscaffold_4G00288450 Rroxscaffold_6G00415250
rosa_rugosa	Rorug01G0342800 Rorug01G0342900 Rorug03G0075300 Rorug03G0075400
rosa_samantha	Rh1AG350100 Rh1AG350200 Rh1BG313300 Rh1BG313400 Rh1CG328000 Rh1CG328100 Rh1DG344700 Rh1DG344800 Rh3BG139000 Rh3CG141100 Rh3CG149400 Rh3DG140200
rosa_wichuraiana	Rw3G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	3 cut(s)	70, 375, 493
AfaI	GTAC	1 cut(s)	224
AfiI	CCNNNNNNNGG	2 cut(s)	137, 454
AgsI	TTSAA	1 cut(s)	466
AhlI	ACTAGT	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	4 cut(s)	49, 97, 180, 437
AluI	AGCT	4 cut(s)	49, 97, 180, 437
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	2 cut(s)	108, 385
AlwI	GGATC	3 cut(s)	70, 375, 493
Ama87I	CYCGRG	1 cut(s)	198
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	4 cut(s)	46, 87, 269, 302
AspS9I	GGNCC	3 cut(s)	167, 235, 457
AvaI	CYCGRG	1 cut(s)	198
AvaII	GGWCC	2 cut(s)	167, 457
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	4 cut(s)	58, 99, 281, 289
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	63
BcoDI	GTCTC	2 cut(s)	108, 385
BcuI	ACTAGT	1 cut(s)	412
BfaI	CTAG	3 cut(s)	413, 449, 511
BisI	GCNGC	4 cut(s)	47, 88, 270, 303
BlsI	GCNGC	4 cut(s)	48, 89, 271, 304
Bme1390I	CCNGG	1 cut(s)	137
Bme18I	GGWCC	2 cut(s)	167, 457
BmeT110I	CYCGRG	1 cut(s)	198
BmgT120I	GGNCC	3 cut(s)	167, 235, 457
BmrFI	CCNGG	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	490
BsaJI	CCNNGG	4 cut(s)	136, 170, 197, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 454
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	209
Bse8I	GATNNNNATC	1 cut(s)	490
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	4 cut(s)	136, 170, 197, 425
BseJI	GATNNNNATC	1 cut(s)	490
BseLI	CCNNNNNNNGG	2 cut(s)	137, 454
BseMI	GCAATG	1 cut(s)	209
BseNI	ACTGG	1 cut(s)	131
BseXI	GCAGC	4 cut(s)	58, 99, 281, 289
BshFI	GGCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	346
BsiHKCI	CYCGRG	1 cut(s)	198
BslI	CCNNNNNNNGG	2 cut(s)	137, 454
BsmAI	GTCTC	2 cut(s)	108, 385
BsnI	GGCC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	4 cut(s)	63, 75, 367, 485
BspACI	CCGC	1 cut(s)	238
BspANI	GGCC	1 cut(s)	236
BspPI	GGATC	3 cut(s)	70, 375, 493
BsrDI	GCAATG	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	4 cut(s)	136, 170, 197, 425
BssMI	GATC	4 cut(s)	63, 75, 367, 485
BssT1I	CCWWGG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	3 cut(s)	22, 227, 244
Bst6I	CTCTTC	1 cut(s)	400
BstC8I	GCNNGC	4 cut(s)	144, 178, 238, 322
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstKTI	GATC	4 cut(s)	66, 78, 370, 488
BstMAI	GTCTC	2 cut(s)	108, 385
BstMBI	GATC	4 cut(s)	63, 75, 367, 485
BstNI	CCWGG	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	4 cut(s)	58, 99, 281, 289
BstX2I	RGATCY	1 cut(s)	367
BstYI	RGATCY	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	236
BtgZI	GCGATG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	4 cut(s)	144, 178, 238, 322
Cfr13I	GGNCC	3 cut(s)	167, 235, 457
Csp6I	GTAC	1 cut(s)	223
CviAII	CATG	3 cut(s)	143, 232, 266
CviJI	RGCY	6 cut(s)	49, 97, 180, 236, 272, 437
CviKI_1	RGCY	6 cut(s)	49, 97, 180, 236, 272, 437
CviQI	GTAC	1 cut(s)	223
DpnI	GATC	4 cut(s)	65, 77, 369, 487
DpnII	GATC	4 cut(s)	63, 75, 367, 485
Eam1104I	CTCTTC	1 cut(s)	400
EarI	CTCTTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	425
Eco47I	GGWCC	2 cut(s)	167, 457
Eco88I	CYCGRG	1 cut(s)	198
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	3 cut(s)	146, 235, 269
FaiI	YATR	6 cut(s)	144, 216, 233, 267, 282, 284
FatI	CATG	3 cut(s)	142, 231, 265
FauI	CCCGC	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	47, 88, 270, 303
Fsp4HI	GCNGC	4 cut(s)	47, 88, 270, 303
FspBI	CTAG	3 cut(s)	413, 449, 511
GluI	GCNGC	4 cut(s)	47, 88, 270, 303
HaeIII	GGCC	1 cut(s)	236
Hin1II	CATG	3 cut(s)	146, 235, 269
HinfI	GANTC	2 cut(s)	127, 206
Hpy166II	GTNNAC	2 cut(s)	167, 418
Hpy188I	TCNGA	1 cut(s)	75
Hpy8I	GTNNAC	2 cut(s)	167, 418
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	3 cut(s)	22, 227, 244
HpyCH4V	TGCA	3 cut(s)	214, 269, 320
Hsp92II	CATG	3 cut(s)	146, 235, 269
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	4 cut(s)	63, 75, 367, 485
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	6 cut(s)	74, 83, 122, 132, 144, 149
Lsp1109I	GCAGC	4 cut(s)	58, 99, 281, 289
MaeI	CTAG	3 cut(s)	413, 449, 511
MaeIII	GTNAC	3 cut(s)	22, 151, 227
MalI	GATC	4 cut(s)	65, 77, 369, 487
MboI	GATC	4 cut(s)	63, 75, 367, 485
MboII	GAAGA	4 cut(s)	62, 417, 478, 481
MflI	RGATCY	1 cut(s)	367
MhlI	GDGCHC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	468
MnlI	CCTC	5 cut(s)	77, 165, 207, 241, 358
MslI	CAYNNNNRTG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
NdeII	GATC	4 cut(s)	63, 75, 367, 485
NlaIII	CATG	3 cut(s)	146, 235, 269
NmuCI	GTSAC	1 cut(s)	151
NspI	RCATGY	1 cut(s)	146
PaeI	GCATGC	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	127, 206
PkrI	GCNGC	4 cut(s)	48, 89, 271, 304
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspPI	GGNCC	3 cut(s)	167, 235, 457
PsuI	RGATCY	1 cut(s)	367
RsaI	GTAC	1 cut(s)	224
RsaNI	GTAC	1 cut(s)	223
RseI	CAYNNNNRTG	1 cut(s)	147
SatI	GCNGC	4 cut(s)	47, 88, 270, 303
Sau3AI	GATC	4 cut(s)	63, 75, 367, 485
Sau96I	GGNCC	3 cut(s)	167, 235, 457
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	346
SetI	ASST	8 cut(s)	51, 63, 99, 182, 252, 403, 439, 450
SinI	GGWCC	2 cut(s)	167, 457
SmiMI	CAYNNNNRTG	1 cut(s)	147
SpeI	ACTAGT	1 cut(s)	412
SphI	GCATGC	1 cut(s)	146
SsiI	CCGC	1 cut(s)	238
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	3 cut(s)	413, 449, 511
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	425
TaaI	ACNGT	3 cut(s)	22, 227, 244
TaqI	TCGA	2 cut(s)	255, 346
TaqII	GACCGA	1 cut(s)	184
TatI	WGTACW	1 cut(s)	222
TfiI	GAWTC	2 cut(s)	127, 206
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	4 cut(s)	46, 87, 269, 302
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	17, 198, 254, 273
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	1 cut(s)	247
VpaK11BI	GGWCC	2 cut(s)	167, 457
XagI	CCTNNNNNAGG	1 cut(s)	452
XceI	RCATGY	1 cut(s)	146
XspI	CTAG	3 cut(s)	413, 449, 511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.