Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000993

Physical Location & Seq

Genomic Coordinates Reverse (-)

44695221 .. 44699637

Gene Structure 4417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG313400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCCGTTGCAGCTAAGGAAAGTTCTAGACGGCTTCAGGCTATGACTTCAGAAGAAAGGAAAAGAATTCTACTGGATATAGCTGATGTGCTTGAAGGAAATTCACATATAATCCATGTAGAAAATGAAGCTAATGTATGTGAAGCAGAACATGCTGGATATGAAAAATCTTTGATATCTCGGCTAGCTCTAAGCCCTGGGAAGATCACACGTCTTGCAAACAACATTCGTGTACTTGCAAACATGGAAGATCCAATTGGCCGCCTTTCAAGAAAAACTCAGCTTGCAGATGGCCTCATCCTAGAGAAAACATCATGTCCACTGGGCGTTCTCTTGGTTATATTTGAGTCTCATCCTGATGCACTAATACAGATAGCTACCTTGGCAATCCGAAATGGGAATTGGCTTCTCTTGAAGGATGGGAAGGAGATTATTTCAGAAACCATCCCAGACAGTGTTGGTCAGAAGCTAATTGGACTTGTGACTTCTAGAGATGAGATTCCAGATCTGCTAAAGCTTGACGACAACCTGATCAATCTTGTGATCCCAAGAGGCAGCAACAAGCTGGTGTCTCAAATAAAGAGTTTGACCAAGATTCCAGTCCTGGGGCATGCTGATGGAGTATGCCATGTGTTTATTGACAAGTCCGCTAATATGGATATGGCAAAGCAAATTGTTTTAGATGCAAAAATAGATTATCCAGCAGCCTGCAATGCAATGGAAACACTTCTGGTCTATAAGGATTTAATGCATACAGCAGAGTTCAATGATCTCATTGTTCAGCTTCGCCAAAAAGGTGTGACTTTGTTTGGTGGACCGAGGGCAAGCTCCTTGCTCAATATTCCTCGGGCAGATTCATTACATATTGAGTACAGTTACATAGCCTGCACTGTTGAGGTTGTCGATGAAGTTCATGCAGCCATTGAGCATATAAATAAAAACGGAAGTGCACATACTGATTGCATCATTGCAGAAGACCAAGAAGTTGTGGAAACTTTTTTAGGTCAAGTTGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

339

Amino Acids

37.23

Weight (kDa)

5.41

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39800 AT2G39800 AT2G39800 AT2G39800 AT3G55610 AT3G55610
fragaria_vesca	FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_7g23420 FvH4_7g23420 FvH4_7g23420 FvH4_7g23430
malus_domestica	MD00G1141100.v1.1 MD01G1140200.v1.1 MD04G1136200.v1.1 MD07G1204500.v1.1 MD12G1150700.v1.1
prunus_persica	Prupe.2G240800_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1
pyrus_communis	pycom01g16070 pycom04g12400 pycom07g19110 pycom12g14450
rosa_chinensis	RchiOBHm_Chr1g0368541 RchiOBHm_Chr1g0368561 RchiOBHm_Chr3g0465091
rosa_laevigata	RLG00000024656 RLG00000027203 RLG00000027204
rosa_multiflora	Rmu_co8458369.1_g000001 Rmu_co8474891.1_g000001 Rmu_sc0003386.1_g000013 Rmu_sc0011394.1_g000007
rosa_roxburghii	Rroxscaffold_4G00288440 Rroxscaffold_4G00288450 Rroxscaffold_6G00415250
rosa_rugosa	Rorug01G0342800 Rorug01G0342900 Rorug03G0075300 Rorug03G0075400
rosa_samantha	Rh1AG350100 Rh1AG350200 Rh1BG313300 Rh1BG313400 Rh1CG328000 Rh1CG328100 Rh1DG344700 Rh1DG344800 Rh3BG139000 Rh3CG141100 Rh3CG149400 Rh3DG140200
rosa_wichuraiana	Rw3G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	262, 648
AclWI	GGATC	2 cut(s)	245, 538
AcoI	YGGCCR	2 cut(s)	3, 259
AcsI	RAATTY	2 cut(s)	66, 100
AcuI	CTGAAG	2 cut(s)	20, 33
AfaI	GTAC	2 cut(s)	234, 872
AfiI	CCNNNNNNNGG	1 cut(s)	605
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	4 cut(s)	95, 270, 415, 766
AjiI	CACGTC	1 cut(s)	212
AjnI	CCWGG	2 cut(s)	196, 603
AjuI	GAANNNNNNNTTGG	4 cut(s)	240, 272, 385, 417
Alw21I	GWGCWC	1 cut(s)	952
Alw26I	GTCTC	2 cut(s)	354, 576
Alw44I	GTGCAC	1 cut(s)	948
AlwI	GGATC	2 cut(s)	245, 538
Ama87I	CYCGRG	1 cut(s)	846
AoxI	GGCC	3 cut(s)	3, 259, 292
ApaLI	GTGCAC	1 cut(s)	948
ApeKI	GCWGC	4 cut(s)	11, 555, 704, 917
ApoI	RAATTY	2 cut(s)	66, 100
Asp700I	GAANNNNTTC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	815
AsuNHI	GCTAGC	1 cut(s)	184
AvaI	CYCGRG	1 cut(s)	846
AvaII	GGWCC	1 cut(s)	815
BaeGI	GKGCMC	1 cut(s)	952
BarI	GAAGNNNNNNTAC	2 cut(s)	937, 969
BbsI	GAAGAC	1 cut(s)	981
Bbv12I	GWGCWC	1 cut(s)	952
BbvI	GCAGC	4 cut(s)	23, 567, 716, 929
BccI	CCATC	4 cut(s)	284, 413, 452, 611
BceAI	ACGGC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	198, 605
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	2 cut(s)	354, 576
BfaI	CTAG	4 cut(s)	27, 185, 302, 489
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	5 cut(s)	12, 262, 556, 705, 918
BlsI	GCNGC	5 cut(s)	13, 263, 557, 706, 919
Bme1390I	CCNGG	2 cut(s)	198, 605
Bme18I	GGWCC	1 cut(s)	815
BmeT110I	CYCGRG	1 cut(s)	846
BmgBI	CACGTC	1 cut(s)	212
BmgT120I	GGNCC	1 cut(s)	815
BmrFI	CCNGG	2 cut(s)	198, 605
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	3 cut(s)	349, 673, 972
BmtI	GCTAGC	1 cut(s)	188
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	981
Bpu10I	CCTNAGC	1 cut(s)	15
BsaJI	CCNNGG	6 cut(s)	196, 197, 381, 604, 818, 845
Bsc4I	CCNNNNNNNGG	1 cut(s)	605
Bse1I	ACTGG	3 cut(s)	78, 327, 599
Bse3DI	GCAATG	3 cut(s)	718, 723, 966
BseBI	CCWGG	2 cut(s)	198, 605
BseDI	CCNNGG	6 cut(s)	196, 197, 381, 604, 818, 845
BseGI	GGATG	4 cut(s)	297, 352, 424, 444
BseLI	CCNNNNNNNGG	1 cut(s)	605
BseMI	GCAATG	3 cut(s)	718, 723, 966
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	3 cut(s)	78, 327, 599
BseSI	GKGCMC	1 cut(s)	952
BseXI	GCAGC	4 cut(s)	23, 567, 716, 929
BsgI	GTGCAG	1 cut(s)	871
BshFI	GGCC	3 cut(s)	5, 261, 294
BsiHKAI	GWGCWC	1 cut(s)	952
BsiHKCI	CYCGRG	1 cut(s)	846
BslI	CCNNNNNNNGG	1 cut(s)	605
BsmAI	GTCTC	2 cut(s)	354, 576
BsnI	GGCC	3 cut(s)	5, 261, 294
BsoBI	CYCGRG	1 cut(s)	846
Bsp1286I	GDGCHC	1 cut(s)	952
Bsp143I	GATC	6 cut(s)	204, 250, 505, 531, 543, 769
BspACI	CCGC	2 cut(s)	262, 648
BspANI	GGCC	3 cut(s)	5, 261, 294
BspCNI	CTCAG	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	188
BspPI	GGATC	2 cut(s)	245, 538
BsrDI	GCAATG	3 cut(s)	718, 723, 966
BsrI	ACTGG	3 cut(s)	78, 327, 599
BssECI	CCNNGG	6 cut(s)	196, 197, 381, 604, 818, 845
BssMI	GATC	6 cut(s)	204, 250, 505, 531, 543, 769
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	2 cut(s)	198, 605
Bst4CI	ACNGT	3 cut(s)	455, 875, 892
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	6 cut(s)	186, 285, 612, 709, 826, 886
BstDEI	CTNAG	3 cut(s)	15, 191, 279
BstF5I	GGATG	4 cut(s)	297, 352, 424, 444
BstKTI	GATC	6 cut(s)	207, 253, 508, 534, 546, 772
BstMAI	GTCTC	2 cut(s)	354, 576
BstMBI	GATC	6 cut(s)	204, 250, 505, 531, 543, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 152, 383, 713
BstNI	CCWGG	2 cut(s)	198, 605
BstNSI	RCATGY	2 cut(s)	155, 614
BstSCI	CCNGG	2 cut(s)	196, 603
BstSLI	GKGCMC	1 cut(s)	952
BstV1I	GCAGC	4 cut(s)	23, 567, 716, 929
BstV2I	GAAGAC	1 cut(s)	981
BstX2I	RGATCY	2 cut(s)	250, 505
BstYI	RGATCY	2 cut(s)	250, 505
BsuRI	GGCC	3 cut(s)	5, 261, 294
BtrI	CACGTC	1 cut(s)	212
BtsCI	GGATG	4 cut(s)	297, 352, 424, 444
BtsIMutI	CAGTG	3 cut(s)	320, 460, 888
Cac8I	GCNNGC	6 cut(s)	186, 285, 612, 709, 826, 886
Cfr13I	GGNCC	1 cut(s)	815
Csp6I	GTAC	2 cut(s)	233, 871
CviAII	CATG	7 cut(s)	116, 152, 244, 315, 611, 629, 914
CviQI	GTAC	2 cut(s)	233, 871
DdeI	CTNAG	3 cut(s)	15, 191, 279
DpnI	GATC	6 cut(s)	206, 252, 507, 533, 545, 771
DpnII	GATC	6 cut(s)	204, 250, 505, 531, 543, 769
EaeI	YGGCCR	2 cut(s)	3, 259
Eco130I	CCWWGG	1 cut(s)	381
Eco32I	GATATC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	815
Eco57I	CTGAAG	2 cut(s)	20, 33
Eco88I	CYCGRG	1 cut(s)	846
EcoRI	GAATTC	1 cut(s)	66
EcoRII	CCWGG	2 cut(s)	196, 603
EcoRV	GATATC	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	7 cut(s)	119, 155, 247, 318, 614, 632, 917
FatI	CATG	7 cut(s)	115, 151, 243, 314, 610, 628, 913
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	5 cut(s)	12, 262, 556, 705, 918
FokI	GGATG	4 cut(s)	284, 339, 431, 431
Fsp4HI	GCNGC	5 cut(s)	12, 262, 556, 705, 918
FspBI	CTAG	4 cut(s)	27, 185, 302, 489
GluI	GCNGC	5 cut(s)	12, 262, 556, 705, 918
HaeIII	GGCC	3 cut(s)	5, 261, 294
Hin1II	CATG	7 cut(s)	119, 155, 247, 318, 614, 632, 917
HincII	GTYRAC	1 cut(s)	1012
HindII	GTYRAC	1 cut(s)	1012
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	4 cut(s)	347, 499, 595, 854
Hpy166II	GTNNAC	5 cut(s)	233, 320, 815, 950, 1012
Hpy188I	TCNGA	4 cut(s)	52, 392, 439, 465
Hpy188III	TCNNGA	6 cut(s)	27, 270, 356, 412, 489, 503
Hpy8I	GTNNAC	5 cut(s)	233, 320, 815, 950, 1012
HpyAV	CCTTC	3 cut(s)	89, 409, 418
HpyCH4III	ACNGT	3 cut(s)	455, 875, 892
HpyCH4IV	ACGT	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 152, 383, 713
HpyF3I	CTNAG	3 cut(s)	15, 191, 279
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	7 cut(s)	119, 155, 247, 318, 614, 632, 917
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	6 cut(s)	204, 250, 505, 531, 543, 769
LmnI	GCTCC	1 cut(s)	833
Lsp1109I	GCAGC	4 cut(s)	23, 567, 716, 929
LweI	GCATC	3 cut(s)	349, 673, 972
MaeI	CTAG	4 cut(s)	27, 185, 302, 489
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	3 cut(s)	481, 799, 875
MalI	GATC	6 cut(s)	206, 252, 507, 533, 545, 771
MboI	GATC	6 cut(s)	204, 250, 505, 531, 543, 769
MboII	GAAGA	4 cut(s)	65, 214, 260, 986
MfeI	CAATTG	1 cut(s)	255
MflI	RGATCY	2 cut(s)	250, 505
MhlI	GDGCHC	1 cut(s)	952
MluCI	AATT	6 cut(s)	66, 100, 255, 400, 471, 672
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	5 cut(s)	305, 545, 813, 855, 889
Mph1103I	ATGCAT	1 cut(s)	753
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	1 cut(s)	746
MslI	CAYNNNNRTG	2 cut(s)	357, 615
MspR9I	CCNGG	2 cut(s)	198, 605
MunI	CAATTG	1 cut(s)	255
MvaI	CCWGG	2 cut(s)	198, 605
MwoI	GCNNNNNNNGC	4 cut(s)	11, 152, 383, 713
NdeII	GATC	6 cut(s)	204, 250, 505, 531, 543, 769
NheI	GCTAGC	1 cut(s)	184
NlaIII	CATG	7 cut(s)	119, 155, 247, 318, 614, 632, 917
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	2 cut(s)	481, 799
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	2 cut(s)	155, 614
PaeI	GCATGC	1 cut(s)	614
PasI	CCCWGGG	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	3 cut(s)	499, 595, 854
PkrI	GCNGC	5 cut(s)	13, 263, 557, 706, 919
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	196, 603
PspGI	CCWGG	2 cut(s)	196, 603
PspPI	GGNCC	1 cut(s)	815
PsuI	RGATCY	2 cut(s)	250, 505
RsaI	GTAC	2 cut(s)	234, 872
RsaNI	GTAC	2 cut(s)	233, 871
RseI	CAYNNNNRTG	2 cut(s)	357, 615
SaqAI	TTAA	1 cut(s)	746
SatI	GCNGC	5 cut(s)	12, 262, 556, 705, 918
Sau3AI	GATC	6 cut(s)	204, 250, 505, 531, 543, 769
Sau96I	GGNCC	1 cut(s)	815
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	2 cut(s)	198, 605
SduI	GDGCHC	1 cut(s)	952
SfaNI	GCATC	3 cut(s)	349, 673, 972
SinI	GGWCC	1 cut(s)	815
SmiMI	CAYNNNNRTG	2 cut(s)	357, 615
SphI	GCATGC	1 cut(s)	614
Sse9I	AATT	6 cut(s)	66, 100, 255, 400, 471, 672
SsiI	CCGC	2 cut(s)	262, 648
SspI	AATATT	1 cut(s)	841
SspMI	CTAG	4 cut(s)	27, 185, 302, 489
StyD4I	CCNGG	2 cut(s)	196, 603
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	3 cut(s)	455, 875, 892
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	903
TaqII	GACCGA	1 cut(s)	832
TasI	AATT	6 cut(s)	66, 100, 255, 400, 471, 672
TatI	WGTACW	2 cut(s)	232, 870
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	3 cut(s)	499, 595, 854
Tru1I	TTAA	1 cut(s)	746
Tru9I	TTAA	1 cut(s)	746
TscAI	CASTG	3 cut(s)	327, 460, 895
TseFI	GTSAC	2 cut(s)	481, 799
TseI	GCWGC	4 cut(s)	11, 555, 704, 917
Tsp45I	GTSAC	2 cut(s)	481, 799
TspDTI	ATGAA	5 cut(s)	141, 177, 846, 902, 921
TspGWI	ACGGA	1 cut(s)	957
TspRI	CASTG	3 cut(s)	327, 460, 895
VneI	GTGCAC	1 cut(s)	948
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	2 cut(s)	66, 100
XbaI	TCTAGA	2 cut(s)	26, 488
XceI	RCATGY	2 cut(s)	155, 614
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	4 cut(s)	27, 185, 302, 489
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.