pycom07g19110

P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
21455734 .. 21459989
4256 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g19110.12

Sequence Viewer

Length: 1608 bp
ATGGAGGAAGTGGATCGTTCTCGAGCTTTCCTCAAAGACGTTAAGCGCCTCGTTATCAAGGTCGGAACTGCCGTTGTGACTCGAAACGACGGAAGAATTGCTCTTGGAAGATTAGGCGCACTTTGTGAGCAGCTGAAGGAGTTGAACTCTCAAGGGTATGAGATTATATTGGTGTCATCTGGTGCTGTGGGCCTCGGCAGACAGCGGCTCAGATACCGGAAATTAGTTAACAGCAGCTTTGCTGATCTCCAGAAACCACAAGTTGAACTTGATGGGAAGGCGTGTGCAGCTGTTGGACAGAACTGTCTGATGGCTCTCTACGATACCTTGTTTAGTCAGTTGGATGTGTCATCAGCTCAACTTCTTGTAACAGACAGCGATTTTAGGGATAGAGATTTCAGAAAGCAACTCAGTGAAACTATGAAATCGTTGTTATCTCTGAAGGTTATTCCTATATTTAATGAAAACGACGCAGTCAGTACGAGGAGAGCTCCTTACGAGGATTCATCTGGTATATTTTGGGATAATGACAGTTTGGCAGCTCTACTGGCTTTGGAGCTAAAGGCTGATCTTCTTATTCTTTTGAGTGATGTGGATGGTCTATATAGTGGGCCTCCAAGTGACCCACGTTCAAAACTTATCCATACGTACATAAAGGAGAAGCATCAGACTGAAATTACTTTCGGAGACAAATCTAGAGTGGGAAGAGGAGGTATGACTGCTAAAGTAAAAGCTGCTGTCAATGCAGCTTATGCTGGCATCCCTGTTGTTATCACCAGTGGGTTTGCTGCTGGAAACATCTTTAAAGTTCTTCAAGGGCAACGTATTGGTACCCTCTTTCATCAAGATGCACACTTATGGGCACCAGTTAAAGAAATTGATGCAAGAGGGATGGCAGTTGCAGCTAGGGAAAGTTCCAGACGGCTTCAGGCCATGACTTCAGAAGAAAGGAAAAAAATTCTTCTGGATGTAGCTGATGCCCTTGAAACAAATGTAAAATTGATCGACATTGAAAATGAAGCTGATGTTTCAGAGGCACAACAAGCGGGATATGAAAAATCACTTATATCTCGGCTGGCTCTGAAGCCTGGGAAGATTACAAGTCTTGCAAAGTCTATACGTGTGCTTGCAAACATGGAAGATCCAATTGGTCGTGTTTTGAAAAAAACTGAGCTTGCAGATGGTCTTGTCTTGGAGAAAACATCAAGCCCACTGGGTGTTCTTCTGATTGTATTTGAGTCCCGTCCTGAAGCGCTAGTACAGATAGCTTCATTAGCAATCCGAAGTGGGAATGGACTTCTCTTGAAGGGGGGAAAGGAGGCTAAGAGATCAAATGCAATTTTGCACAAGATTATCACCGAAGCCATCCCAGAGAGTGTTGGTGGAAAACTAATTGGACTTGTGACTTCAAGAGAAGAGATTCCAGATTTGCTTAAGCATGATGACGTGATTGATCGATCCCAAGAGGCAGCAATAAACTGGTTTCTCAAGTCAAGAATTCGACCAAGATTCCAGTTCTCGGTCATGCCGATGGAATATGCCACGTGTATATTGATAAGTCTGCTAATATGGATATGGCAAAGAGAATTGTTTTGGATGCAAAAATAG

Protein Analysis

536

Amino Acids

59.11

Weight (kDa)

8.98

Isoelectric Point (pI)

36.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 303
Acc65I GGTACC 1 cut(s) 830
AccB1I GGYRCC 2 cut(s) 830, 862
AciI CCGC 2 cut(s) 205, 1046
AclWI GGATC 3 cut(s) 21, 1136, 1452
AcsI RAATTY 2 cut(s) 957, 1497
AcuI CTGAAG 6 cut(s) 155, 461, 911, 924, 1103, 1269
AcvI CACGTG 1 cut(s) 1545
AdeI CACNNNGTG 2 cut(s) 125, 1217
AfaI GTAC 4 cut(s) 481, 650, 832, 1260
AfeI AGCGCT 1 cut(s) 1254
AfiI CCNNNNNNNGG 1 cut(s) 1519
AflII CTTAAG 1 cut(s) 1433
AflIII ACRYGT 2 cut(s) 1120, 1544
AgsI TTSAA 9 cut(s) 145, 266, 633, 815, 986, 1013, 1162, 1306, 1410
AjiI CACGTC 1 cut(s) 1447
AjnI CCWGG 1 cut(s) 1087
AjuI GAANNNNNNNTTGG 2 cut(s) 1131, 1163
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 681
AlwI GGATC 3 cut(s) 21, 1136, 1452
Ama87I CYCGRG 1 cut(s) 21
Aor51HI AGCGCT 1 cut(s) 1254
AoxI GGCC 3 cut(s) 190, 611, 930
ApeKI GCWGC 9 cut(s) 130, 234, 287, 539, 734, 746, 788, 902, 1469
ApoI RAATTY 2 cut(s) 957, 1497
Asp700I GAANNNNTTC 1 cut(s) 1419
Asp718I GGTACC 1 cut(s) 830
AspLEI GCGC 3 cut(s) 48, 119, 1255
AspS9I GGNCC 2 cut(s) 190, 611
AsuHPI GGTGA 2 cut(s) 766, 1348
AvaI CYCGRG 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 865
BanI GGYRCC 2 cut(s) 830, 862
BanII GRGCYC 1 cut(s) 493
BarI GAAGNNNNNNTAC 2 cut(s) 1242, 1274
BbrPI CACGTG 1 cut(s) 1545
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 9 cut(s) 142, 246, 299, 551, 721, 758, 775, 914, 1481
BccI CCATC 7 cut(s) 266, 304, 590, 886, 1175, 1373, 1525
BceAI ACGGC 2 cut(s) 56, 938
BciT130I CCWGG 1 cut(s) 1089
BcoDI GTCTC 1 cut(s) 681
BfaI CTAG 3 cut(s) 696, 906, 1256
BfoI RGCGCY 2 cut(s) 49, 1256
BfrI CTTAAG 1 cut(s) 1433
Bme1390I CCNGG 1 cut(s) 1089
BmeT110I CYCGRG 1 cut(s) 21
BmgBI CACGTC 1 cut(s) 1447
BmgT120I GGNCC 2 cut(s) 190, 611
BmiI GGNNCC 2 cut(s) 832, 864
BmrFI CCNGG 1 cut(s) 1089
BmrI ACTGGG 1 cut(s) 1223
BmsI GCATC 6 cut(s) 673, 768, 838, 871, 967, 1587
BmuI ACTGGG 1 cut(s) 1223
BplI GAGNNNNNCTC 6 cut(s) 15, 47, 131, 163, 475, 507
BpmI CTGGAG 1 cut(s) 233
BpuEI CTTGAG 2 cut(s) 135, 1472
Bsa29I ATCGAT 1 cut(s) 1456
BsaAI YACGTR 3 cut(s) 648, 1121, 1545
BsaJI CCNNGG 2 cut(s) 193, 1088
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 1519
Bse1I ACTGG 6 cut(s) 552, 777, 866, 1218, 1484, 1513
BseBI CCWGG 1 cut(s) 1089
BseCI ATCGAT 1 cut(s) 1456
BseDI CCNNGG 2 cut(s) 193, 1088
BseGI GGATG 7 cut(s) 349, 601, 759, 897, 973, 1365, 1602
BseLI CCNNNNNNNGG 1 cut(s) 1519
BseMII CTCAG 3 cut(s) 223, 424, 1161
BseNI ACTGG 6 cut(s) 552, 777, 866, 1218, 1484, 1513
BseRI GAGGAG 2 cut(s) 499, 723
BseSI GKGCMC 1 cut(s) 865
BseXI GCAGC 9 cut(s) 142, 246, 299, 551, 721, 758, 775, 914, 1481
BsgI GTGCAG 1 cut(s) 306
BshFI GGCC 3 cut(s) 192, 613, 932
BshNI GGYRCC 2 cut(s) 830, 862
BshVI ATCGAT 1 cut(s) 1456
BsiHKAI GWGCWC 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 21
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 1225
BslI CCNNNNNNNGG 1 cut(s) 1519
BsmAI GTCTC 1 cut(s) 681
BsmFI GGGAC 1 cut(s) 1225
BsnI GGCC 3 cut(s) 192, 613, 932
BsoBI CYCGRG 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 493, 865
Bsp143I GATC 8 cut(s) 13, 244, 568, 1002, 1141, 1328, 1453, 1457
BspACI CCGC 2 cut(s) 205, 1046
BspANI GGCC 3 cut(s) 192, 613, 932
BspCNI CTCAG 3 cut(s) 222, 423, 1162
BspDI ATCGAT 1 cut(s) 1456
BspLI GGNNCC 2 cut(s) 832, 864
BspPI GGATC 3 cut(s) 21, 1136, 1452
BspT107I GGYRCC 2 cut(s) 830, 862
BspTI CTTAAG 1 cut(s) 1433
BsrI ACTGG 6 cut(s) 552, 777, 866, 1218, 1484, 1513
BssECI CCNNGG 2 cut(s) 193, 1088
BssMI GATC 8 cut(s) 13, 244, 568, 1002, 1141, 1328, 1453, 1457
Bst2UI CCWGG 1 cut(s) 1089
Bst4CI ACNGT 2 cut(s) 305, 533
Bst6I CTCTTC 2 cut(s) 700, 1410
BstAFI CTTAAG 1 cut(s) 1433
BstAPI GCANNNNNTGC 1 cut(s) 752
BstBAI YACGTR 3 cut(s) 648, 1121, 1545
BstC8I GCNNGC 4 cut(s) 757, 1077, 1128, 1176
BstDEI CTNAG 4 cut(s) 209, 410, 1170, 1323
BstF5I GGATG 7 cut(s) 349, 601, 759, 897, 973, 1365, 1602
BstH2I RGCGCY 2 cut(s) 49, 1256
BstHHI GCGC 3 cut(s) 48, 119, 1255
BstKTI GATC 8 cut(s) 16, 247, 571, 1005, 1144, 1331, 1456, 1460
BstMAI GTCTC 1 cut(s) 681
BstMBI GATC 8 cut(s) 13, 244, 568, 1002, 1141, 1328, 1453, 1457
BstMWI GCNNNNNNNGC 7 cut(s) 287, 548, 743, 752, 902, 1043, 1274
BstNI CCWGG 1 cut(s) 1089
BstSCI CCNGG 1 cut(s) 1087
BstSLI GKGCMC 1 cut(s) 865
BstSNI TACGTA 1 cut(s) 648
BstV1I GCAGC 9 cut(s) 142, 246, 299, 551, 721, 758, 775, 914, 1481
BstX2I RGATCY 1 cut(s) 1141
BstYI RGATCY 1 cut(s) 1141
Bsu15I ATCGAT 1 cut(s) 1456
BsuRI GGCC 3 cut(s) 192, 613, 932
BsuTUI ATCGAT 1 cut(s) 1456
BtrI CACGTC 1 cut(s) 1447
BtsCI GGATG 7 cut(s) 349, 601, 759, 897, 973, 1365, 1602
BtsIMutI CAGTG 3 cut(s) 418, 784, 1211
Cac8I GCNNGC 4 cut(s) 757, 1077, 1128, 1176
CfoI GCGC 3 cut(s) 48, 119, 1255
Cfr13I GGNCC 2 cut(s) 190, 611
ClaI ATCGAT 1 cut(s) 1456
CseI GACGC 1 cut(s) 479
Csp6I GTAC 4 cut(s) 480, 649, 831, 1259
CviAII CATG 4 cut(s) 934, 1135, 1439, 1525
CviQI GTAC 4 cut(s) 480, 649, 831, 1259
DdeI CTNAG 4 cut(s) 209, 410, 1170, 1323
DpnI GATC 8 cut(s) 15, 246, 570, 1004, 1143, 1330, 1455, 1459
DpnII GATC 8 cut(s) 13, 244, 568, 1002, 1141, 1328, 1453, 1457
DraI TTTAAA 1 cut(s) 805
DraIII CACNNNGTG 2 cut(s) 125, 1217
DrdI GACNNNNNNGTC 1 cut(s) 303
DseDI GACNNNNNNGTC 1 cut(s) 303
Eam1104I CTCTTC 2 cut(s) 700, 1410
EarI CTCTTC 2 cut(s) 700, 1410
Ecl136II GAGCTC 1 cut(s) 491
Eco105I TACGTA 1 cut(s) 648
Eco24I GRGCYC 1 cut(s) 493
Eco47III AGCGCT 1 cut(s) 1254
Eco53kI GAGCTC 1 cut(s) 491
Eco57I CTGAAG 6 cut(s) 155, 461, 911, 924, 1103, 1269
Eco72I CACGTG 1 cut(s) 1545
Eco88I CYCGRG 1 cut(s) 21
EcoICRI GAGCTC 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 1497
EcoRII CCWGG 1 cut(s) 1087
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 4 cut(s) 937, 1138, 1442, 1528
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FaqI GGGAC 1 cut(s) 1225
FatI CATG 4 cut(s) 933, 1134, 1438, 1524
FauI CCCGC 1 cut(s) 1039
FokI GGATG 6 cut(s) 356, 608, 746, 904, 980, 1352
FriOI GRGCYC 1 cut(s) 493
FspBI CTAG 3 cut(s) 696, 906, 1256
GlaI GCGC 3 cut(s) 47, 118, 1254
GsuI CTGGAG 1 cut(s) 233
HaeII RGCGCY 2 cut(s) 49, 1256
HaeIII GGCC 3 cut(s) 192, 613, 932
HapII CCGG 1 cut(s) 217
HgaI GACGC 1 cut(s) 479
HhaI GCGC 3 cut(s) 48, 119, 1255
Hin1II CATG 4 cut(s) 937, 1138, 1442, 1528
Hin6I GCGC 3 cut(s) 46, 117, 1253
HinP1I GCGC 3 cut(s) 46, 117, 1253
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 5 cut(s) 79, 503, 1238, 1420, 1509
HpaI GTTAAC 1 cut(s) 229
HpaII CCGG 1 cut(s) 217
HphI GGTGA 2 cut(s) 766, 1348
Hpy166II GTNNAC 1 cut(s) 229
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 2 cut(s) 92, 473
HpyAV CCTTC 4 cut(s) 130, 271, 436, 1300
HpyCH4III ACNGT 2 cut(s) 305, 533
HpyCH4IV ACGT 7 cut(s) 39, 628, 647, 823, 1120, 1446, 1544
HpyF10VI GCNNNNNNNGC 7 cut(s) 287, 548, 743, 752, 902, 1043, 1274
HpyF3I CTNAG 4 cut(s) 209, 410, 1170, 1323
HpySE526I ACGT 7 cut(s) 39, 628, 647, 823, 1120, 1446, 1544
Hsp92II CATG 4 cut(s) 937, 1138, 1442, 1528
HspAI GCGC 3 cut(s) 46, 117, 1253
KpnI GGTACC 1 cut(s) 834
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 8 cut(s) 13, 244, 568, 1002, 1141, 1328, 1453, 1457
LmnI GCTCC 2 cut(s) 496, 556
Lsp1109I GCAGC 9 cut(s) 142, 246, 299, 551, 721, 758, 775, 914, 1481
LweI GCATC 6 cut(s) 673, 768, 838, 871, 967, 1587
MaeI CTAG 3 cut(s) 696, 906, 1256
MaeII ACGT 7 cut(s) 39, 628, 647, 823, 1120, 1446, 1544
MaeIII GTNAC 4 cut(s) 76, 367, 620, 1402
MalI GATC 8 cut(s) 15, 246, 570, 1004, 1143, 1330, 1455, 1459
MboI GATC 8 cut(s) 13, 244, 568, 1002, 1141, 1328, 1453, 1457
MfeI CAATTG 1 cut(s) 1146
MflI RGATCY 1 cut(s) 1141
MhlI GDGCHC 2 cut(s) 493, 865
MlyI GAGTC 2 cut(s) 73, 1247
MmeI TCCRAC 3 cut(s) 43, 274, 321
MroXI GAANNNNTTC 1 cut(s) 1419
MseI TTAA 6 cut(s) 42, 228, 459, 804, 870, 1434
MslI CAYNNNNRTG 3 cut(s) 846, 856, 1529
MspA1I CMGCKG 3 cut(s) 133, 205, 290
MspCI CTTAAG 1 cut(s) 1433
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 1 cut(s) 1089
MunI CAATTG 1 cut(s) 1146
MvaI CCWGG 1 cut(s) 1089
MwoI GCNNNNNNNGC 7 cut(s) 287, 548, 743, 752, 902, 1043, 1274
NdeII GATC 8 cut(s) 13, 244, 568, 1002, 1141, 1328, 1453, 1457
NlaIII CATG 4 cut(s) 937, 1138, 1442, 1528
NlaIV GGNNCC 2 cut(s) 832, 864
NmeAIII GCCGAG 2 cut(s) 174, 1051
NmuCI GTSAC 3 cut(s) 76, 620, 1402
PaeR7I CTCGAG 1 cut(s) 21
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 1526
PdmI GAANNNNTTC 1 cut(s) 1419
PfeI GAWTC 3 cut(s) 503, 1420, 1509
PflFI GACNNNGTC 1 cut(s) 473
PleI GAGTC 2 cut(s) 73, 1246
PmaCI CACGTG 1 cut(s) 1545
PmlI CACGTG 1 cut(s) 1545
PpsI GAGTC 2 cut(s) 73, 1246
Ppu21I YACGTR 3 cut(s) 648, 1121, 1545
Psp124BI GAGCTC 1 cut(s) 493
Psp6I CCWGG 1 cut(s) 1087
PspCI CACGTG 1 cut(s) 1545
PspGI CCWGG 1 cut(s) 1087
PspN4I GGNNCC 2 cut(s) 832, 864
PspPI GGNCC 2 cut(s) 190, 611
PsuI RGATCY 1 cut(s) 1141
PsyI GACNNNGTC 1 cut(s) 473
PvuII CAGCTG 2 cut(s) 133, 290
RsaI GTAC 4 cut(s) 481, 650, 832, 1260
RsaNI GTAC 4 cut(s) 480, 649, 831, 1259
RseI CAYNNNNRTG 3 cut(s) 846, 856, 1529
SacI GAGCTC 1 cut(s) 493
SaqAI TTAA 6 cut(s) 42, 228, 459, 804, 870, 1434
Sau3AI GATC 8 cut(s) 13, 244, 568, 1002, 1141, 1328, 1453, 1457
Sau96I GGNCC 2 cut(s) 190, 611
SchI GAGTC 2 cut(s) 73, 1247
ScrFI CCNGG 1 cut(s) 1089
SduI GDGCHC 2 cut(s) 493, 865
SfaNI GCATC 6 cut(s) 673, 768, 838, 871, 967, 1587
Sfr274I CTCGAG 1 cut(s) 21
SlaI CTCGAG 1 cut(s) 21
SmiMI CAYNNNNRTG 3 cut(s) 846, 856, 1529
SmlI CTYRAG 4 cut(s) 21, 150, 1433, 1487
SmoI CTYRAG 4 cut(s) 21, 150, 1433, 1487
SnaBI TACGTA 1 cut(s) 648
SsiI CCGC 2 cut(s) 205, 1046
SspMI CTAG 3 cut(s) 696, 906, 1256
SstI GAGCTC 1 cut(s) 493
StyD4I CCNGG 1 cut(s) 1087
TaaI ACNGT 2 cut(s) 305, 533
TaiI ACGT 7 cut(s) 42, 631, 650, 826, 1123, 1449, 1547
TaqI TCGA 5 cut(s) 22, 82, 1005, 1456, 1501
TaqII GACCGA 1 cut(s) 1510
TatI WGTACW 1 cut(s) 1258
TauI GCSGC 1 cut(s) 208
TfiI GAWTC 3 cut(s) 503, 1420, 1509
Tru1I TTAA 6 cut(s) 42, 228, 459, 804, 870, 1434
Tru9I TTAA 6 cut(s) 42, 228, 459, 804, 870, 1434
TscAI CASTG 3 cut(s) 418, 784, 1218
TseFI GTSAC 3 cut(s) 76, 620, 1402
TseI GCWGC 9 cut(s) 130, 234, 287, 539, 734, 746, 788, 902, 1469
Tsp45I GTSAC 3 cut(s) 76, 620, 1402
TspDTI ATGAA 7 cut(s) 437, 477, 495, 830, 1032, 1068, 1260
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 3 cut(s) 418, 784, 1218
Tth111I GACNNNGTC 1 cut(s) 473
Vha464I CTTAAG 1 cut(s) 1433
XapI RAATTY 2 cut(s) 957, 1497
XbaI TCTAGA 1 cut(s) 695
XhoI CTCGAG 1 cut(s) 21
XmnI GAANNNNTTC 1 cut(s) 1419
XspI CTAG 3 cut(s) 696, 906, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.