Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000993

Physical Location & Seq

Genomic Coordinates Reverse (-)

58634829 .. 58635492

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59290

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGATATGGCAAAGCAAATTGTTTTAGATGCAAAAATAAATTATCCAGCAGCCTGCAATGCAATGGAAACACTTCTGGTCCATAAGGATTTAATGCATACAGCAGAGTTCAATGATCTCATTGTTCAGCTTCGCCATAAAGGTGTGACTTTGTTTGGTGGACCGAGGGCAAGCTCCTTGCTCAATATTCCTCGGGATTCATTACATATTGAGTACAGTTCCATGGCCTGCACTGTTGAGGTTGTCGATGAAGTTCATGCAGCCATTGAGCATATAAATAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

95

Amino Acids

10.57

Weight (kDa)

5.78

Isoelectric Point (pI)

69.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39800 AT2G39800 AT2G39800 AT2G39800 AT3G55610 AT3G55610
fragaria_vesca	FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_7g23420 FvH4_7g23420 FvH4_7g23420 FvH4_7g23430
malus_domestica	MD00G1141100.v1.1 MD01G1140200.v1.1 MD04G1136200.v1.1 MD07G1204500.v1.1 MD12G1150700.v1.1
prunus_persica	Prupe.2G240800_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1
pyrus_communis	pycom01g16070 pycom04g12400 pycom07g19110 pycom12g14450
rosa_chinensis	RchiOBHm_Chr1g0368541 RchiOBHm_Chr1g0368561 RchiOBHm_Chr3g0465091
rosa_laevigata	RLG00000024656 RLG00000027203 RLG00000027204
rosa_multiflora	Rmu_co8458369.1_g000001 Rmu_co8474891.1_g000001 Rmu_sc0003386.1_g000013 Rmu_sc0011394.1_g000007
rosa_roxburghii	Rroxscaffold_4G00288440 Rroxscaffold_4G00288450 Rroxscaffold_6G00415250
rosa_rugosa	Rorug01G0342800 Rorug01G0342900 Rorug03G0075300 Rorug03G0075400
rosa_samantha	Rh1AG350100 Rh1AG350200 Rh1BG313300 Rh1BG313400 Rh1CG328000 Rh1CG328100 Rh1DG344700 Rh1DG344800 Rh3BG139000 Rh3CG141100 Rh3CG149400 Rh3DG140200
rosa_wichuraiana	Rw3G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	112
AluBI	AGCT	2 cut(s)	130, 174
AluI	AGCT	2 cut(s)	130, 174
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	50, 260
Asp700I	GAANNNNTTC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	79, 161
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	2 cut(s)	79, 161
BbvI	GCAGC	2 cut(s)	62, 272
BisI	GCNGC	2 cut(s)	51, 261
BlsI	GCNGC	2 cut(s)	52, 262
Bme18I	GGWCC	2 cut(s)	79, 161
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	79, 161
BmsI	GCATC	1 cut(s)	19
BsaJI	CCNNGG	3 cut(s)	164, 191, 222
Bse3DI	GCAATG	2 cut(s)	64, 69
BseDI	CCNNGG	3 cut(s)	164, 191, 222
BseMI	GCAATG	2 cut(s)	64, 69
BseXI	GCAGC	2 cut(s)	62, 272
BsgI	GTGCAG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	227
BsiHKCI	CYCGRG	1 cut(s)	192
BsnI	GGCC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	115
Bsp19I	CCATGG	1 cut(s)	222
BspANI	GGCC	1 cut(s)	227
BsrDI	GCAATG	2 cut(s)	64, 69
BssECI	CCNNGG	3 cut(s)	164, 191, 222
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	2 cut(s)	218, 235
BstC8I	GCNNGC	3 cut(s)	55, 172, 229
BstDSI	CCRYGG	1 cut(s)	222
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	62, 272
BsuRI	GGCC	1 cut(s)	227
BtgI	CCRYGG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	55, 172, 229
Cfr13I	GGNCC	2 cut(s)	79, 161
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	2 cut(s)	223, 257
CviJI	RGCY	5 cut(s)	53, 130, 174, 227, 263
CviKI_1	RGCY	5 cut(s)	53, 130, 174, 227, 263
CviQI	GTAC	1 cut(s)	214
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	79, 161
Eco88I	CYCGRG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	226, 260
FaiI	YATR	9 cut(s)	8, 84, 99, 138, 207, 224, 258, 273, 275
FatI	CATG	2 cut(s)	222, 256
Fnu4HI	GCNGC	2 cut(s)	51, 261
Fsp4HI	GCNGC	2 cut(s)	51, 261
GluI	GCNGC	2 cut(s)	51, 261
HaeIII	GGCC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	226, 260
HinfI	GANTC	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188III	TCNNGA	1 cut(s)	194
Hpy8I	GTNNAC	1 cut(s)	161
HpyCH4III	ACNGT	2 cut(s)	218, 235
HpyCH4V	TGCA	6 cut(s)	32, 57, 62, 97, 231, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	226, 260
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	4 cut(s)	60, 62, 67, 241
Lsp1109I	GCAGC	2 cut(s)	62, 272
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MluCI	AATT	2 cut(s)	18, 40
MnlI	CCTC	3 cut(s)	159, 201, 232
Mph1103I	ATGCAT	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	72
MseI	TTAA	1 cut(s)	92
MslI	CAYNNNNRTG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	59
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	226, 260
NmuCI	GTSAC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	52, 262
PspPI	GGNCC	2 cut(s)	79, 161
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	2 cut(s)	51, 261
Sau3AI	GATC	1 cut(s)	115
Sau96I	GGNCC	2 cut(s)	79, 161
SetI	ASST	4 cut(s)	132, 145, 176, 243
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	2 cut(s)	79, 161
SmiMI	CAYNNNNRTG	1 cut(s)	141
Sse9I	AATT	2 cut(s)	18, 40
SspI	AATATT	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	218, 235
TaqI	TCGA	1 cut(s)	246
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	18, 40
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	50, 260
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	3 cut(s)	189, 245, 264
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	79, 161
XmnI	GAANNNNTTC	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.