RLG00000027203

P5CS plays a key role in proline biosynthesis, leading to osmoregulation in plants

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
9552813 .. 9557104
4292 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027203

Sequence Viewer

Length: 1530 bp
ATGGAACAAGACATTGATCGAGCTTTCCTCAAAGACAGAAACGTAGGAACTGCGGTTGTGACTGAAAAGGATGGAAGAATTGCGCTTGAAAGATTGCAAGTGCTTTGTGAGGAGCTTACGGAGTTGAGATCTCAAGCATATGAGGTGATATTGGTGACATCAGGAGCTGTGGCCCTTGGTCGTCAAGTGCTGAGAGACAGGAGAAGAGAGTTTGAAATCTCTGCTGATCTCCAAAAGCCAGCTGAACTGGATGGGAAGGCATGTGCAGCTGTTGGACAGCCTGATCTGATGGCTCTCTTTAAGACCGTGTTTAGTGAGGATGTGACAGAAGCTCAGTGTCTTGTCACAGAAAGTGACTTTGGGGTAAAAGATTTTCAAAGGCAGCTGAAAGAAACTGTCGATCACTTGCTTTCTTTAAAGACTATACCTATTTTCAATGAAAATGATGCAGTTAGTACCAGAACAGATTTATATGAGGATTCTTCTGGTATATTTTGGGACAATGACAGTTTGGCAGCTATACTAGCTAAGGAGCTAAAGGCTGATCTTCTTATCCTTATGAGTGATGCTATGACTTCAGAAGAAAGGAAAAGAATTCTACTGGACATAGCTGATGCGCTTGAAGGAAATTCACATATAATCCATGTAGAAAATGAAGCCGATATCACACGTCTTGCAAACAACATTCGTGTACTTGCAGACATGGAAGATCCAATTGGCCGCCTTTCAAGAAAAACCCAGCTTGCAGATGGCCTCATCTTAGAGAAAACATCATGTCCACTGGGCGTTCTCTTGGTTATATTTGAGTCTCATCCTGATGCACTAATACAGCTACCTTGGCAATCCGAAATGGGATTGAAGGATGGGAAGGAGATTATTTCAGAAACCATCCCAGACAGTGTTGGTCAGAAGCTAATTGGACTTGTGACTTCTAGAGATGAGATTCCAGATCTGCTAAAGCTTGACGACAACCTGATCAATCTTGTGATCCCAAGAGGCAGCAACAAGCTGGTGACTCAAATAAAGAGTTTGACCAAGATTCCAGTCCTGGGGCATGCTGATGGAGTATGCCATGTGTTTCTTGACAAGTCCGCTGATATGGATATGGCAAAGCAAATTGATTTAATGCATACAGCAGAGTTCAATGATCTCATTGTTCAGCTTCGCCATAAAGGTGTGACTTTGTTTGGTGGACCGAGGGCAAGCTCCTTGCTCAATATTCCTCGGGCAGATTCATTACATAGTGAGTACAGTTATATGGCCTGCACTGTTGAGGTTGTCGATGAAGTTCATGCAGCCATTGAGCGTATAAATAAAAACGGAACAAGCCATTTCATTAATTTGTTGTTTCCTTTATTTGGCAGTGCACATACTGATTCCGTCATTGCAGAAGACCAAGAAGTTGTGGAAATTTATTTAGGTCAAGTTGACTGCAGTGCTGCTGTTTCTCACAATGCAAACACAAGATTTAGCGATGGTGCTCGATTTGGACTTGGGGCAGAGGTAAAACATCATTTTAGCAGTAATTGA

Protein Analysis

510

Amino Acids

56.23

Weight (kDa)

4.85

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AA_kinase PF00696 15 - 189 9.2e-19 Amino acid kinase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 53, 721, 1092
AclWI GGATC 2 cut(s) 704, 982
AcoI YGGCCR 1 cut(s) 718
AcsI RAATTY 3 cut(s) 594, 628, 1410
AcuI CTGAAG 1 cut(s) 561
AfaI GTAC 3 cut(s) 457, 693, 1250
AfiI CCNNNNNNNGG 2 cut(s) 1049, 1358
AflIII ACRYGT 1 cut(s) 668
AgsI TTSAA 8 cut(s) 89, 215, 377, 436, 623, 729, 859, 1144
AjiI CACGTC 1 cut(s) 671
AjnI CCWGG 1 cut(s) 1047
AjuI GAANNNNNNNTTGG 4 cut(s) 342, 374, 699, 731
Alw21I GWGCWC 2 cut(s) 1369, 1483
Alw26I GTCTC 2 cut(s) 189, 813
Alw44I GTGCAC 1 cut(s) 1365
AlwI GGATC 2 cut(s) 704, 982
AlwNI CAGNNNCTG 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 1224
AoxI GGCC 4 cut(s) 171, 718, 751, 1260
ApaLI GTGCAC 1 cut(s) 1365
ApeKI GCWGC 6 cut(s) 266, 382, 515, 999, 1295, 1439
ApoI RAATTY 3 cut(s) 594, 628, 1410
AseI ATTAAT 1 cut(s) 1338
AspLEI GCGC 2 cut(s) 85, 619
AspS9I GGNCC 2 cut(s) 172, 1193
AsuHPI GGTGA 3 cut(s) 157, 166, 1024
AvaI CYCGRG 1 cut(s) 1224
AvaII GGWCC 1 cut(s) 1193
BaeGI GKGCMC 1 cut(s) 1369
BbsI GAAGAC 1 cut(s) 1398
Bbv12I GWGCWC 2 cut(s) 1369, 1483
BbvI GCAGC 6 cut(s) 278, 394, 527, 1011, 1307, 1426
BccI CCATC 8 cut(s) 65, 245, 283, 743, 857, 896, 1055, 1469
BciT130I CCWGG 1 cut(s) 1049
BclI TGATCA 1 cut(s) 975
BcoDI GTCTC 2 cut(s) 189, 813
BfaI CTAG 2 cut(s) 524, 933
BfmI CTRYAG 1 cut(s) 1432
BglII AGATCT 2 cut(s) 128, 949
BisI GCNGC 7 cut(s) 267, 383, 516, 721, 1000, 1296, 1440
BlsI GCNGC 7 cut(s) 268, 384, 517, 722, 1001, 1297, 1441
Bme1390I CCNGG 1 cut(s) 1049
Bme18I GGWCC 1 cut(s) 1193
BmeT110I CYCGRG 1 cut(s) 1224
BmgBI CACGTC 1 cut(s) 671
BmgT120I GGNCC 2 cut(s) 172, 1193
BmrFI CCNGG 1 cut(s) 1049
BmrI ACTGGG 1 cut(s) 791
BmsI GCATC 4 cut(s) 436, 556, 604, 808
BmuI ACTGGG 1 cut(s) 791
BpiI GAAGAC 1 cut(s) 1398
BplI GAGNNNNNCTC 2 cut(s) 12, 44
Bpu10I CCTNAGC 1 cut(s) 528
BpuEI CTTGAG 1 cut(s) 117
BsaJI CCNNGG 5 cut(s) 175, 836, 1048, 1196, 1223
Bsc4I CCNNNNNNNGG 2 cut(s) 1049, 1358
Bse1I ACTGG 4 cut(s) 252, 606, 786, 1043
Bse3DI GCAATG 1 cut(s) 1383
BseBI CCWGG 1 cut(s) 1049
BseDI CCNNGG 5 cut(s) 175, 836, 1048, 1196, 1223
BseGI GGATG 6 cut(s) 76, 256, 325, 811, 868, 888
BseLI CCNNNNNNNGG 2 cut(s) 1049, 1358
BseMI GCAATG 1 cut(s) 1383
BseMII CTCAG 2 cut(s) 182, 347
BseNI ACTGG 4 cut(s) 252, 606, 786, 1043
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 1369
BseXI GCAGC 6 cut(s) 278, 394, 527, 1011, 1307, 1426
BseYI CCCAGC 1 cut(s) 738
BsgI GTGCAG 2 cut(s) 285, 1249
BshFI GGCC 4 cut(s) 173, 720, 753, 1262
BsiHKAI GWGCWC 2 cut(s) 1369, 1483
BsiHKCI CYCGRG 1 cut(s) 1224
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 2 cut(s) 1049, 1358
BsmAI GTCTC 2 cut(s) 189, 813
BsmFI GGGAC 1 cut(s) 512
BsnI GGCC 4 cut(s) 173, 720, 753, 1262
BsoBI CYCGRG 1 cut(s) 1224
Bsp1286I GDGCHC 2 cut(s) 1369, 1483
BspACI CCGC 3 cut(s) 53, 721, 1092
BspANI GGCC 4 cut(s) 173, 720, 753, 1262
BspCNI CTCAG 2 cut(s) 183, 346
BspMAI CTGCAG 1 cut(s) 1436
BspPI GGATC 2 cut(s) 704, 982
BsrDI GCAATG 1 cut(s) 1383
BsrI ACTGG 4 cut(s) 252, 606, 786, 1043
BssECI CCNNGG 5 cut(s) 175, 836, 1048, 1196, 1223
BssT1I CCWWGG 2 cut(s) 175, 836
Bst2UI CCWGG 1 cut(s) 1049
Bst4CI ACNGT 6 cut(s) 307, 397, 509, 899, 1253, 1270
Bst6I CTCTTC 1 cut(s) 199
BstC8I GCNNGC 5 cut(s) 240, 744, 1056, 1204, 1264
BstDEI CTNAG 4 cut(s) 191, 333, 528, 760
BstF5I GGATG 6 cut(s) 76, 256, 325, 811, 868, 888
BstHHI GCGC 2 cut(s) 85, 619
BstMAI GTCTC 2 cut(s) 189, 813
BstMWI GCNNNNNNNGC 3 cut(s) 266, 524, 838
BstNI CCWGG 1 cut(s) 1049
BstNSI RCATGY 2 cut(s) 264, 1058
BstSCI CCNGG 1 cut(s) 1047
BstSFI CTRYAG 1 cut(s) 1432
BstSLI GKGCMC 1 cut(s) 1369
BstV1I GCAGC 6 cut(s) 278, 394, 527, 1011, 1307, 1426
BstV2I GAAGAC 1 cut(s) 1398
BstX2I RGATCY 3 cut(s) 128, 709, 949
BstYI RGATCY 3 cut(s) 128, 709, 949
BsuRI GGCC 4 cut(s) 173, 720, 753, 1262
BtgZI GCGATG 1 cut(s) 1488
BtrI CACGTC 1 cut(s) 671
BtsCI GGATG 6 cut(s) 76, 256, 325, 811, 868, 888
BtsI GCAGTG 2 cut(s) 1369, 1441
BtsIMutI CAGTG 6 cut(s) 341, 779, 904, 1266, 1369, 1441
Cac8I GCNNGC 5 cut(s) 240, 744, 1056, 1204, 1264
CaiI CAGNNNCTG 1 cut(s) 167
CfoI GCGC 2 cut(s) 85, 619
Cfr13I GGNCC 2 cut(s) 172, 1193
Csp6I GTAC 3 cut(s) 456, 692, 1249
CviAII CATG 7 cut(s) 261, 644, 703, 774, 1055, 1073, 1292
CviQI GTAC 3 cut(s) 456, 692, 1249
DdeI CTNAG 4 cut(s) 191, 333, 528, 760
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 1 cut(s) 718
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 175, 836
Eco32I GATATC 1 cut(s) 664
Eco47I GGWCC 1 cut(s) 1193
Eco57I CTGAAG 1 cut(s) 561
Eco88I CYCGRG 1 cut(s) 1224
EcoRI GAATTC 1 cut(s) 594
EcoRII CCWGG 1 cut(s) 1047
EcoRV GATATC 1 cut(s) 664
EcoT14I CCWWGG 2 cut(s) 175, 836
EcoT22I ATGCAT 1 cut(s) 1131
ErhI CCWWGG 2 cut(s) 175, 836
FaeI CATG 7 cut(s) 264, 647, 706, 777, 1058, 1076, 1295
FaqI GGGAC 1 cut(s) 512
FatI CATG 7 cut(s) 260, 643, 702, 773, 1054, 1072, 1291
FauNDI CATATG 1 cut(s) 139
FbaI TGATCA 1 cut(s) 975
Fnu4HI GCNGC 7 cut(s) 267, 383, 516, 721, 1000, 1296, 1440
FokI GGATG 6 cut(s) 83, 263, 332, 798, 875, 875
Fsp4HI GCNGC 7 cut(s) 267, 383, 516, 721, 1000, 1296, 1440
FspBI CTAG 2 cut(s) 524, 933
GlaI GCGC 2 cut(s) 84, 618
GluI GCNGC 7 cut(s) 267, 383, 516, 721, 1000, 1296, 1440
GsaI CCCAGC 1 cut(s) 742
HaeIII GGCC 4 cut(s) 173, 720, 753, 1262
HhaI GCGC 2 cut(s) 85, 619
Hin1II CATG 7 cut(s) 264, 647, 706, 777, 1058, 1076, 1295
Hin6I GCGC 2 cut(s) 83, 617
HinP1I GCGC 2 cut(s) 83, 617
HincII GTYRAC 1 cut(s) 1429
HindII GTYRAC 1 cut(s) 1429
HindIII AAGCTT 1 cut(s) 959
HinfI GANTC 7 cut(s) 479, 806, 943, 1015, 1039, 1232, 1376
HphI GGTGA 3 cut(s) 157, 166, 1024
Hpy166II GTNNAC 5 cut(s) 692, 779, 1193, 1367, 1429
Hpy188I TCNGA 5 cut(s) 288, 580, 847, 883, 909
Hpy188III TCNNGA 6 cut(s) 162, 729, 815, 933, 947, 1082
Hpy8I GTNNAC 5 cut(s) 692, 779, 1193, 1367, 1429
HpyAV CCTTC 4 cut(s) 250, 617, 853, 862
HpyCH4III ACNGT 6 cut(s) 307, 397, 509, 899, 1253, 1270
HpyCH4IV ACGT 2 cut(s) 42, 670
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 524, 838
HpyF3I CTNAG 4 cut(s) 191, 333, 528, 760
HpySE526I ACGT 2 cut(s) 42, 670
Hsp92II CATG 7 cut(s) 264, 647, 706, 777, 1058, 1076, 1295
HspAI GCGC 2 cut(s) 83, 617
Ksp22I TGATCA 1 cut(s) 975
LmnI GCTCC 4 cut(s) 112, 164, 532, 1211
Lsp1109I GCAGC 6 cut(s) 278, 394, 527, 1011, 1307, 1426
LweI GCATC 4 cut(s) 436, 556, 604, 808
MaeI CTAG 2 cut(s) 524, 933
MaeII ACGT 2 cut(s) 42, 670
MaeIII GTNAC 8 cut(s) 58, 154, 322, 343, 353, 925, 1012, 1177
MboII GAAGA 7 cut(s) 87, 216, 474, 539, 593, 719, 1403
MfeI CAATTG 1 cut(s) 714
MflI RGATCY 3 cut(s) 128, 709, 949
MhlI GDGCHC 2 cut(s) 1369, 1483
MluCI AATT 9 cut(s) 78, 594, 628, 714, 915, 1116, 1339, 1410, 1525
MlyI GAGTC 2 cut(s) 815, 1009
MmeI TCCRAC 1 cut(s) 253
Mph1103I ATGCAT 1 cut(s) 1131
MseI TTAA 4 cut(s) 300, 416, 1124, 1338
MslI CAYNNNNRTG 3 cut(s) 816, 1059, 1173
MspA1I CMGCKG 4 cut(s) 242, 269, 385, 1094
MspR9I CCNGG 1 cut(s) 1049
MunI CAATTG 1 cut(s) 714
MvaI CCWGG 1 cut(s) 1049
MwoI GCNNNNNNNGC 3 cut(s) 266, 524, 838
NdeI CATATG 1 cut(s) 139
NlaIII CATG 7 cut(s) 264, 647, 706, 777, 1058, 1076, 1295
NmuCI GTSAC 8 cut(s) 58, 154, 322, 343, 353, 925, 1012, 1177
NsiI ATGCAT 1 cut(s) 1131
NspI RCATGY 2 cut(s) 264, 1058
PaeI GCATGC 1 cut(s) 1058
PfeI GAWTC 5 cut(s) 479, 943, 1039, 1232, 1376
PkrI GCNGC 7 cut(s) 268, 384, 517, 722, 1001, 1297, 1441
PleI GAGTC 2 cut(s) 814, 1009
PpsI GAGTC 2 cut(s) 814, 1009
PshBI ATTAAT 1 cut(s) 1338
Psp6I CCWGG 1 cut(s) 1047
PspFI CCCAGC 1 cut(s) 738
PspGI CCWGG 1 cut(s) 1047
PspPI GGNCC 2 cut(s) 172, 1193
PstI CTGCAG 1 cut(s) 1436
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 3 cut(s) 128, 709, 949
PvuII CAGCTG 3 cut(s) 242, 269, 385
RsaI GTAC 3 cut(s) 457, 693, 1250
RsaNI GTAC 3 cut(s) 456, 692, 1249
RseI CAYNNNNRTG 3 cut(s) 816, 1059, 1173
SaqAI TTAA 4 cut(s) 300, 416, 1124, 1338
SatI GCNGC 7 cut(s) 267, 383, 516, 721, 1000, 1296, 1440
Sau96I GGNCC 2 cut(s) 172, 1193
SchI GAGTC 2 cut(s) 815, 1009
ScrFI CCNGG 1 cut(s) 1049
SduI GDGCHC 2 cut(s) 1369, 1483
SfaNI GCATC 4 cut(s) 436, 556, 604, 808
SfcI CTRYAG 1 cut(s) 1432
SinI GGWCC 1 cut(s) 1193
SmiMI CAYNNNNRTG 3 cut(s) 816, 1059, 1173
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
SphI GCATGC 1 cut(s) 1058
Sse9I AATT 9 cut(s) 78, 594, 628, 714, 915, 1116, 1339, 1410, 1525
SsiI CCGC 3 cut(s) 53, 721, 1092
SspI AATATT 1 cut(s) 1219
SspMI CTAG 2 cut(s) 524, 933
StyD4I CCNGG 1 cut(s) 1047
StyI CCWWGG 2 cut(s) 175, 836
TaaI ACNGT 6 cut(s) 307, 397, 509, 899, 1253, 1270
TaiI ACGT 2 cut(s) 45, 673
TaqI TCGA 4 cut(s) 19, 399, 1281, 1483
TaqII GACCGA 1 cut(s) 1210
TasI AATT 9 cut(s) 78, 594, 628, 714, 915, 1116, 1339, 1410, 1525
TatI WGTACW 2 cut(s) 691, 1248
TauI GCSGC 1 cut(s) 723
TfiI GAWTC 5 cut(s) 479, 943, 1039, 1232, 1376
Tru1I TTAA 4 cut(s) 300, 416, 1124, 1338
Tru9I TTAA 4 cut(s) 300, 416, 1124, 1338
TscAI CASTG 6 cut(s) 341, 786, 904, 1273, 1369, 1441
TseFI GTSAC 8 cut(s) 58, 154, 322, 343, 353, 925, 1012, 1177
TseI GCWGC 6 cut(s) 266, 382, 515, 999, 1295, 1439
Tsp45I GTSAC 8 cut(s) 58, 154, 322, 343, 353, 925, 1012, 1177
TspDTI ATGAA 6 cut(s) 453, 669, 1224, 1280, 1299, 1324
TspGWI ACGGA 3 cut(s) 134, 1335, 1369
TspRI CASTG 6 cut(s) 341, 786, 904, 1273, 1369, 1441
VneI GTGCAC 1 cut(s) 1365
VpaK11BI GGWCC 1 cut(s) 1193
VspI ATTAAT 1 cut(s) 1338
XapI RAATTY 3 cut(s) 594, 628, 1410
XbaI TCTAGA 1 cut(s) 932
XceI RCATGY 2 cut(s) 264, 1058
XcmI CCANNNNNNNNNTGG 1 cut(s) 746
XspI CTAG 2 cut(s) 524, 933
Zsp2I ATGCAT 1 cut(s) 1131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.