Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000993

Physical Location & Seq

Genomic Coordinates Forward (+)

46098202 .. 46106391

Gene Structure 8190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0342900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2496 bp

ATGGCGACGGCGGCTGCGGCGTTGGTTCTCAAGCCGTCGTGCGTGCTGCGACGGCCGAGGGGAGCCAAAGCGACGACGTACAAGAGTAAGCGAGCAATAAAGGGACGAGCTTTGGGGGATTTCGGGCACTTCGGTCAGGTGGTCAGCAAGGACGTGGAGTTTCTGAAGCGGAGGATTGGTGGAGGATTTGAGTGGGCGAATAAGACTCTTCGGATTCCGGAGGTGTTCAAAGCCGTCGACGACGTCGTTTGGCTTCGTAACCTCGAAGAACCCTATGCCCCTCCCTTGCCGGAGGCGCGTTGGCCTCAACCTTCCTATCCAGAATTCACTGGTGTCGATCTATTCATGGCGGATCTCAAAGCGTTAGAGGCATATGCTCTTTACTTTTATTATCTTTCTAAGAGTTGGTCCAAGCCGCTTCCTGAAGTCTATGACCCAGAAAGTGTTGCTGATTATTTCAGTTGCAGGCCTCACGTAGTCACCCTTAGACTTCTTGAGGTAGTTTCCTCCTTTGCTTTTGCTGCAATCAGAATTCGGACATCTGGGATCAAAAAGTATTTACGACCAAGTTCGGGTGATGATTATGAAAGCTTATCACAATACAATGTTGGAATGGTGTTAAAAGAAACTATGCTAAATCTGGGTCCCACTTTTATCAAAGTTGGCCAGTCCCTTTCCACCAGACCAGACATTATTGGTGCTGAAATTTCCCAGCCATTGTCTGAGCTGCATGATCAAATCCCTCCTTTTTCCAGGGATGTGGCGATGAAAATTATCGAAGAAGAATTAGGATCTCCTGCTGAGTCACTCTATAGCTACATTTCTGAGAAACCTGAGGCAGCGGCATCTTTTGGTCAGGTCTACCGTGCACGTACTCATGATGGACTGGATGTTGCTGTTAAAGTTCAACGTCCTAACTTGCGTCATATTGTAGTGCGCGATATATACATTCTTCGCCTGGGGCTTGGACTATTGCAAAAGGTAGCAAAGCGAAAAGGTGATCTCCGCCTATATGCCGATGAGCTTGGGAAAGGTTTTGTTGGAGAACTGGATTATACTTTAGAAGCTGCAAATGCTTCCAAGTTTCTGGAAGTTTATTCCTCCTATCCATTCATGCGTGTGCCAAAAGTATTCCAAAGTTTAAGTGGAAAGAGAGTTCTGACAATGGAGTGGATTGTTGGTGAGAGTCCAACTGACTTATTGTCTGTATCTTCTGGAAGCTCTACAGATGATAGCTCTACATATACAGAGAGGCAAAGATTAGATTCCAAAAGGCGTCTCCTTGATCTGGTCAGGAAAGGGGTGGAGGCAGTACTAGTTCAGCTCCTTGAAACAGGATTATTGCATGCTGATCCACATCCTGGGAACCTACGTTACACATCTTCAGGACAAATAGGGTTTTTGGATTTTGGCCTGCTTTGTCAGATGGAAAAGAGGCATCAATATGCTATGCTTGCATCTATTGTCCACATTGTAAATGGAGATTGGGCATCCCTTGTCCAATGTTTGACTGAAATGGATGTTGTAAGACCAGGGACTAATATCAGACGTGTAACAATGGATCTGGAATATGACTTGGGGGAGGTAGAATTCAGAGATGGAGTTCCTGATGTGAAGTTCAGCAGGGTTTTGGGTAAGATCTGGTCCCTAGCCTTCAAGTATCATTTTCGCATGCCACCCTACTACTCGCTTGTTCTACGTTCTCTTGCTTCCTTTGAAGGATTAGCCGTTGCTGGAGATAGAAATTTTAAGACATTTGAAGCTGCATACCCTTATGTCGTTCGGAAACTACTTACTGAAAACTCAGCTGCCACAAGGAAAATTTTGCATTCGGTAGTTTTTAACAAAAAGAAGGAGTTCCAGTGGCAAAAGCTTGCTCTTTTCTTAAAAGTAGGCGCAACTAGGAAAGGTTTGAATGGGAGTATAGCATCAAAACTCGACACTTCTCATGATTATTTACCTACAAGAGACAATGGTGAAATTGATGTTGCAAACTTGGTCCTGAAGCTTTTACCATCTAAAGATGGTGTTGTGCTGAGAAGACTCTTGATGACTGCAGATGGAGCTTCATTGATCCAAGCAATGGTATCCAAGGAAGGAAAGTTTTTCCGCCAGCAATTTTGCAGGTTTGTTGCAGACATTTTGCATCAATGGATGCTTGAAACGTTTGTGCGGGGCATTACAACAGTTCAGTATAGCTCTAATTTGAGAGTGGCAAGTGGACCTGACAACAAAGAACTAGGTCCATCTTCCAGACTATCTACTCCAATTTATGATTATCGCTCTGTCCTCAGAGATCGACGGCTCAAAGTGATTTTCTCAAACATAATAAACTCTGCAAGGAAAAATCCAGTACTGATGCTGAGGTTCTGTTGGACTTCCTTTGTTATGTCTGTTGTGGCTTTTGCTTTGGCTTCTCATCGTGTTCTAATATCCTTCTCTGAAGCTTACTTGGGCCCGATATCTTTTGCTTCGAAACAGTATGCGATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

831

Amino Acids

93.53

Weight (kDa)

9.41

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC1	PF03109	243 - 501	2.3e-68	ABC1 atypical kinase-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39800 AT2G39800 AT2G39800 AT2G39800 AT3G55610 AT3G55610
fragaria_vesca	FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_7g23420 FvH4_7g23420 FvH4_7g23420 FvH4_7g23430
malus_domestica	MD00G1141100.v1.1 MD01G1140200.v1.1 MD04G1136200.v1.1 MD07G1204500.v1.1 MD12G1150700.v1.1
prunus_persica	Prupe.2G240800_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1
pyrus_communis	pycom01g16070 pycom04g12400 pycom07g19110 pycom12g14450
rosa_chinensis	RchiOBHm_Chr1g0368541 RchiOBHm_Chr1g0368561 RchiOBHm_Chr3g0465091
rosa_laevigata	RLG00000024656 RLG00000027203 RLG00000027204
rosa_multiflora	Rmu_co8458369.1_g000001 Rmu_co8474891.1_g000001 Rmu_sc0003386.1_g000013 Rmu_sc0011394.1_g000007
rosa_roxburghii	Rroxscaffold_4G00288440 Rroxscaffold_4G00288450 Rroxscaffold_6G00415250
rosa_rugosa	Rorug01G0342800 Rorug01G0342900 Rorug03G0075300 Rorug03G0075400
rosa_samantha	Rh1AG350100 Rh1AG350200 Rh1BG313300 Rh1BG313400 Rh1CG328000 Rh1CG328100 Rh1DG344700 Rh1DG344800 Rh3BG139000 Rh3CG141100 Rh3CG149400 Rh3DG140200
rosa_wichuraiana	Rw3G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
Acc36I	ACCTGC	1 cut(s)	2115
AccB7I	CCANNNNNTGG	2 cut(s)	1361, 2083
AccI	GTMKAC	2 cut(s)	237, 861
AccII	CGCG	2 cut(s)	298, 939
AccIII	TCCGGA	1 cut(s)	217
AciI	CCGC	9 cut(s)	11, 17, 169, 350, 416, 842, 1006, 2110, 2173
AclI	AACGTT	1 cut(s)	2165
AclWI	GGATC	7 cut(s)	360, 554, 799, 1346, 1569, 2068, 2482
AcoI	YGGCCR	2 cut(s)	53, 664
AcsI	RAATTY	6 cut(s)	323, 531, 705, 1589, 1744, 1821
AcuI	CTGAAG	5 cut(s)	185, 444, 1368, 2024, 2463
AcyI	GRCGYC	2 cut(s)	243, 1276
AfaI	GTAC	4 cut(s)	80, 874, 1314, 2355
AfiI	CCNNNNNNNGG	4 cut(s)	572, 1288, 1361, 2083
AflIII	ACRYGT	1 cut(s)	1549
AgsI	TTSAA	8 cut(s)	229, 908, 1331, 1657, 1718, 1760, 1915, 2162
AhdI	GACNNNNNGTC	1 cut(s)	1201
AhlI	ACTAGT	1 cut(s)	1315
AjiI	CACGTC	2 cut(s)	154, 1550
AjnI	CCWGG	4 cut(s)	752, 957, 1360, 1531
AloI	GAACNNNNNNTCC	2 cut(s)	1140, 1172
Alw21I	GWGCWC	1 cut(s)	871
Alw26I	GTCTC	2 cut(s)	1283, 1962
Alw44I	GTGCAC	1 cut(s)	867
AlwI	GGATC	7 cut(s)	360, 554, 799, 1346, 1569, 2068, 2482
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	6 cut(s)	53, 302, 467, 664, 1411, 2455
ApaI	GGGCCC	1 cut(s)	2459
ApaLI	GTGCAC	1 cut(s)	867
ApeKI	GCWGC	8 cut(s)	14, 46, 521, 727, 839, 1067, 1763, 1808
ApoI	RAATTY	6 cut(s)	323, 531, 705, 1589, 1744, 1821
Asp700I	GAANNNNTTC	1 cut(s)	1856
AspLEI	GCGC	3 cut(s)	298, 939, 1898
AspS9I	GGNCC	8 cut(s)	408, 644, 1644, 1999, 2222, 2243, 2455, 2456
AsuHPI	GGTGA	5 cut(s)	472, 587, 1010, 1193, 1988
AsuII	TTCGAA	1 cut(s)	2474
AvaII	GGWCC	6 cut(s)	408, 644, 1644, 1999, 2222, 2243
AxyI	CCTNAGG	1 cut(s)	834
BaeGI	GKGCMC	3 cut(s)	129, 871, 2459
BalI	TGGCCA	1 cut(s)	666
BanII	GRGCYC	1 cut(s)	2459
BbsI	GAAGAC	1 cut(s)	2047
Bbv12I	GWGCWC	1 cut(s)	871
BbvCI	CCTCAGC	1 cut(s)	2363
BbvI	GCAGC	7 cut(s)	33, 508, 714, 851, 1054, 1750, 1795
BccI	CCATC	7 cut(s)	875, 1420, 1592, 2018, 2023, 2054, 2254
BceAI	ACGGC	6 cut(s)	19, 24, 68, 218, 1712, 2318
BciT130I	CCWGG	4 cut(s)	754, 959, 1362, 1533
BciVI	GTATCC	1 cut(s)	2098
BclI	TGATCA	1 cut(s)	733
BcoDI	GTCTC	2 cut(s)	1283, 1962
BcuI	ACTAGT	1 cut(s)	1315
BfaI	CTAG	4 cut(s)	1316, 1649, 1902, 2240
BfmI	CTRYAG	3 cut(s)	811, 1224, 2055
BfuAI	ACCTGC	1 cut(s)	2115
BfuI	GTATCC	1 cut(s)	2098
BglII	AGATCT	1 cut(s)	1638
BmcAI	AGTACT	2 cut(s)	1314, 2355
Bme1390I	CCNGG	4 cut(s)	754, 959, 1362, 1533
Bme18I	GGWCC	6 cut(s)	408, 644, 1644, 1999, 2222, 2243
BmeRI	GACNNNNNGTC	1 cut(s)	1201
BmgBI	CACGTC	2 cut(s)	154, 1550
BmgT120I	GGNCC	8 cut(s)	408, 644, 1644, 1999, 2222, 2243, 2455, 2456
BmiI	GGNNCC	6 cut(s)	64, 645, 646, 1367, 1646, 2457
BmrFI	CCNGG	4 cut(s)	754, 959, 1362, 1533
BmsI	GCATC	8 cut(s)	854, 1447, 1466, 1499, 1937, 2145, 2155, 2349
BpiI	GAAGAC	1 cut(s)	2047
BpmI	CTGGAG	1 cut(s)	1755
Bpu10I	CCTNAGC	1 cut(s)	2363
Bpu14I	TTCGAA	1 cut(s)	2474
BpuEI	CTTGAG	2 cut(s)	14, 515
BsaAI	YACGTR	2 cut(s)	475, 872
BsaBI	GATNNNNATC	1 cut(s)	1356
BsaHI	GRCGYC	2 cut(s)	243, 1276
BsaJI	CCNNGG	6 cut(s)	56, 753, 958, 1361, 1532, 2091
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	4 cut(s)	163, 193, 1847, 1877
Bsc4I	CCNNNNNNNGG	4 cut(s)	572, 1288, 1361, 2083
Bse1I	ACTGG	6 cut(s)	334, 667, 891, 1053, 1861, 2351
Bse21I	CCTNAGG	1 cut(s)	834
Bse3DI	GCAATG	1 cut(s)	2088
Bse8I	GATNNNNATC	1 cut(s)	1356
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	4 cut(s)	754, 959, 1362, 1533
BseDI	CCNNGG	6 cut(s)	56, 753, 958, 1361, 1532, 2091
BseGI	GGATG	6 cut(s)	763, 895, 1357, 1490, 1525, 2160
BseJI	GATNNNNATC	1 cut(s)	1356
BseLI	CCNNNNNNNGG	4 cut(s)	572, 1288, 1361, 2083
BseMI	GCAATG	1 cut(s)	2088
BseMII	CTCAG	8 cut(s)	714, 792, 816, 825, 1818, 2027, 2305, 2354
BseNI	ACTGG	6 cut(s)	334, 667, 891, 1053, 1861, 2351
BseSI	GKGCMC	3 cut(s)	129, 871, 2459
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	7 cut(s)	33, 508, 714, 851, 1054, 1750, 1795
BseYI	CCCAGC	1 cut(s)	711
Bsh1236I	CGCG	2 cut(s)	298, 939
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	6 cut(s)	55, 304, 469, 666, 1413, 2457
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	871
BsiSI	CCGG	2 cut(s)	218, 290
BslFI	GGGAC	5 cut(s)	117, 630, 655, 1549, 1630
BslI	CCNNNNNNNGG	4 cut(s)	572, 1288, 1361, 2083
BsmAI	GTCTC	2 cut(s)	1283, 1962
BsmBI	CGTCTC	1 cut(s)	1283
BsmFI	GGGAC	5 cut(s)	117, 630, 655, 1549, 1630
BsmI	GAATGC	1 cut(s)	1828
BsnI	GGCC	6 cut(s)	55, 304, 469, 666, 1413, 2457
Bsp119I	TTCGAA	1 cut(s)	2474
Bsp120I	GGGCCC	1 cut(s)	2455
Bsp1286I	GDGCHC	3 cut(s)	129, 871, 2459
Bsp13I	TCCGGA	1 cut(s)	217
BspACI	CCGC	9 cut(s)	11, 17, 169, 350, 416, 842, 1006, 2110, 2173
BspANI	GGCC	6 cut(s)	55, 304, 469, 666, 1413, 2457
BspCNI	CTCAG	8 cut(s)	715, 793, 817, 826, 1817, 2028, 2304, 2355
BspEI	TCCGGA	1 cut(s)	217
BspFNI	CGCG	2 cut(s)	298, 939
BspHI	TCATGA	2 cut(s)	877, 1948
BspLI	GGNNCC	6 cut(s)	64, 645, 646, 1367, 1646, 2457
BspMAI	CTGCAG	1 cut(s)	2059
BspMI	ACCTGC	1 cut(s)	2115
BspPI	GGATC	7 cut(s)	360, 554, 799, 1346, 1569, 2068, 2482
BspT104I	TTCGAA	1 cut(s)	2474
BsrDI	GCAATG	1 cut(s)	2088
BsrI	ACTGG	6 cut(s)	334, 667, 891, 1053, 1861, 2351
BssECI	CCNNGG	6 cut(s)	56, 753, 958, 1361, 1532, 2091
BssNI	GRCGYC	2 cut(s)	243, 1276
BssT1I	CCWWGG	1 cut(s)	2091
Bst2UI	CCWGG	4 cut(s)	754, 959, 1362, 1533
Bst4CI	ACNGT	3 cut(s)	866, 2188, 2481
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	2 cut(s)	243, 1276
BstBAI	YACGTR	2 cut(s)	475, 872
BstBI	TTCGAA	1 cut(s)	2474
BstC8I	GCNNGC	9 cut(s)	44, 93, 467, 1347, 1415, 1455, 1673, 1875, 2114
BstF5I	GGATG	6 cut(s)	763, 895, 1357, 1490, 1525, 2160
BstFNI	CGCG	2 cut(s)	298, 939
BstHHI	GCGC	3 cut(s)	298, 939, 1898
BstMAI	GTCTC	2 cut(s)	1283, 1962
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 17, 52, 295, 368, 521, 1073, 1454, 2063
BstNI	CCWGG	4 cut(s)	754, 959, 1362, 1533
BstNSI	RCATGY	2 cut(s)	1349, 1675
BstSCI	CCNGG	4 cut(s)	752, 957, 1360, 1531
BstSFI	CTRYAG	3 cut(s)	811, 1224, 2055
BstSLI	GKGCMC	3 cut(s)	129, 871, 2459
BstUI	CGCG	2 cut(s)	298, 939
BstV1I	GCAGC	7 cut(s)	33, 508, 714, 851, 1054, 1750, 1795
BstV2I	GAAGAC	1 cut(s)	2047
BstX2I	RGATCY	4 cut(s)	352, 791, 1561, 1638
BstXI	CCANNNNNNTGG	2 cut(s)	760, 1087
BstYI	RGATCY	4 cut(s)	352, 791, 1561, 1638
BstZI	CGGCCG	1 cut(s)	53
Bsu36I	CCTNAGG	1 cut(s)	834
BsuI	GTATCC	1 cut(s)	2098
BsuRI	GGCC	6 cut(s)	55, 304, 469, 666, 1413, 2457
BtgZI	GCGATG	1 cut(s)	779
BtrI	CACGTC	2 cut(s)	154, 1550
BtsCI	GGATG	6 cut(s)	763, 895, 1357, 1490, 1525, 2160
BtsIMutI	CAGTG	2 cut(s)	327, 1868
BveI	ACCTGC	1 cut(s)	2115
Cac8I	GCNNGC	9 cut(s)	44, 93, 467, 1347, 1415, 1455, 1673, 1875, 2114
CciI	TCATGA	2 cut(s)	877, 1948
CfoI	GCGC	3 cut(s)	298, 939, 1898
Cfr13I	GGNCC	8 cut(s)	408, 644, 1644, 1999, 2222, 2243, 2455, 2456
CseI	GACGC	2 cut(s)	911, 1265
Csp6I	GTAC	4 cut(s)	79, 873, 1313, 2354
CviAII	CATG	8 cut(s)	346, 731, 878, 1114, 1346, 1672, 1949, 2493
CviQI	GTAC	4 cut(s)	79, 873, 1313, 2354
DriI	GACNNNNNGTC	1 cut(s)	1201
EaeI	YGGCCR	2 cut(s)	53, 664
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	213
Eam1105I	GACNNNNNGTC	1 cut(s)	1201
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	3 cut(s)	365, 995, 2099
EclXI	CGGCCG	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	2091
Eco147I	AGGCCT	1 cut(s)	469
Eco24I	GRGCYC	1 cut(s)	2459
Eco32I	GATATC	1 cut(s)	2463
Eco47I	GGWCC	6 cut(s)	408, 644, 1644, 1999, 2222, 2243
Eco52I	CGGCCG	1 cut(s)	53
Eco57I	CTGAAG	5 cut(s)	185, 444, 1368, 2024, 2463
Eco81I	CCTNAGG	1 cut(s)	834
EcoO109I	RGGNCCY	1 cut(s)	644
EcoRI	GAATTC	3 cut(s)	323, 531, 1589
EcoRII	CCWGG	4 cut(s)	752, 957, 1360, 1531
EcoRV	GATATC	1 cut(s)	2463
EcoT14I	CCWWGG	1 cut(s)	2091
EcoT38I	GRGCYC	1 cut(s)	2459
ErhI	CCWWGG	1 cut(s)	2091
Esp3I	CGTCTC	1 cut(s)	1283
FaeI	CATG	8 cut(s)	349, 734, 881, 1117, 1349, 1675, 1952, 2496
FaqI	GGGAC	5 cut(s)	117, 630, 655, 1549, 1630
FatI	CATG	8 cut(s)	345, 730, 877, 1113, 1345, 1671, 1948, 2492
FauI	CCCGC	1 cut(s)	2166
FauNDI	CATATG	1 cut(s)	373
FbaI	TGATCA	1 cut(s)	733
FblI	GTMKAC	2 cut(s)	237, 861
FokI	GGATG	6 cut(s)	770, 902, 1344, 1477, 1532, 2167
FriOI	GRGCYC	1 cut(s)	2459
FspBI	CTAG	4 cut(s)	1316, 1649, 1902, 2240
GlaI	GCGC	3 cut(s)	297, 938, 1897
GsaI	CCCAGC	1 cut(s)	715
GsuI	CTGGAG	1 cut(s)	1755
HaeIII	GGCC	6 cut(s)	55, 304, 469, 666, 1413, 2457
HapII	CCGG	2 cut(s)	218, 290
HgaI	GACGC	2 cut(s)	911, 1265
HhaI	GCGC	3 cut(s)	298, 939, 1898
Hin1I	GRCGYC	2 cut(s)	243, 1276
Hin1II	CATG	8 cut(s)	349, 734, 881, 1117, 1349, 1675, 1952, 2496
Hin6I	GCGC	3 cut(s)	296, 937, 1896
HinP1I	GCGC	3 cut(s)	296, 937, 1896
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	4 cut(s)	589, 1871, 2006, 2445
HinfI	GANTC	6 cut(s)	205, 214, 803, 1186, 1265, 2043
HpaII	CCGG	2 cut(s)	218, 290
HphI	GGTGA	5 cut(s)	472, 587, 1010, 1193, 1988
Hpy166II	GTNNAC	5 cut(s)	238, 862, 869, 1468, 2222
Hpy8I	GTNNAC	5 cut(s)	238, 862, 869, 1468, 2222
HpyAV	CCTTC	6 cut(s)	321, 1663, 1712, 1846, 2090, 2446
HpyCH4III	ACNGT	3 cut(s)	866, 2188, 2481
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 17, 52, 295, 368, 521, 1073, 1454, 2063
Hsp92I	GRCGYC	2 cut(s)	243, 1276
Hsp92II	CATG	8 cut(s)	349, 734, 881, 1117, 1349, 1675, 1952, 2496
HspAI	GCGC	3 cut(s)	296, 937, 1896
KflI	GGGWCCC	1 cut(s)	644
Kpn2I	TCCGGA	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	733
LmnI	GCTCC	3 cut(s)	62, 1329, 2063
Lsp1109I	GCAGC	7 cut(s)	33, 508, 714, 851, 1054, 1750, 1795
LweI	GCATC	8 cut(s)	854, 1447, 1466, 1499, 1937, 2145, 2155, 2349
MaeI	CTAG	4 cut(s)	1316, 1649, 1902, 2240
MaeIII	GTNAC	5 cut(s)	257, 478, 804, 1373, 1552
MboII	GAAGA	9 cut(s)	200, 278, 791, 794, 944, 1203, 1374, 2052, 2241
MflI	RGATCY	4 cut(s)	352, 791, 1561, 1638
MhlI	GDGCHC	3 cut(s)	129, 871, 2459
MlsI	TGGCCA	1 cut(s)	666
MluNI	TGGCCA	1 cut(s)	666
MlyI	GAGTC	4 cut(s)	199, 812, 1195, 2037
MmeI	TCCRAC	4 cut(s)	589, 1021, 1214, 2354
Mox20I	TGGCCA	1 cut(s)	666
MroI	TCCGGA	1 cut(s)	217
MroXI	GAANNNNTTC	1 cut(s)	1856
MscI	TGGCCA	1 cut(s)	666
MseI	TTAA	6 cut(s)	620, 900, 1142, 1749, 1842, 1886
MslI	CAYNNNNRTG	2 cut(s)	1118, 1443
Msp20I	TGGCCA	1 cut(s)	666
MspA1I	CMGCKG	2 cut(s)	842, 1808
MspI	CCGG	2 cut(s)	218, 290
MspR9I	CCNGG	4 cut(s)	754, 959, 1362, 1533
Mva1269I	GAATGC	1 cut(s)	1828
MvaI	CCWGG	4 cut(s)	754, 959, 1362, 1533
MvnI	CGCG	2 cut(s)	298, 939
MwoI	GCNNNNNNNGC	9 cut(s)	11, 17, 52, 295, 368, 521, 1073, 1454, 2063
NdeI	CATATG	1 cut(s)	373
NlaIII	CATG	8 cut(s)	349, 734, 881, 1117, 1349, 1675, 1952, 2496
NlaIV	GGNNCC	6 cut(s)	64, 645, 646, 1367, 1646, 2457
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	478, 804
NspI	RCATGY	2 cut(s)	1349, 1675
NspV	TTCGAA	1 cut(s)	2474
PaeI	GCATGC	2 cut(s)	1349, 1675
PagI	TCATGA	2 cut(s)	877, 1948
PceI	AGGCCT	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PctI	GAATGC	1 cut(s)	1828
PdmI	GAANNNNTTC	1 cut(s)	1856
PfeI	GAWTC	2 cut(s)	214, 1265
PflFI	GACNNNGTC	1 cut(s)	242
PflMI	CCANNNNNTGG	2 cut(s)	1361, 2083
PleI	GAGTC	4 cut(s)	199, 811, 1194, 2037
PpsI	GAGTC	4 cut(s)	199, 811, 1194, 2037
Ppu21I	YACGTR	2 cut(s)	475, 872
PpuMI	RGGWCCY	1 cut(s)	644
Psp1406I	AACGTT	1 cut(s)	2165
Psp5II	RGGWCCY	1 cut(s)	644
Psp6I	CCWGG	4 cut(s)	752, 957, 1360, 1531
PspFI	CCCAGC	1 cut(s)	711
PspGI	CCWGG	4 cut(s)	752, 957, 1360, 1531
PspN4I	GGNNCC	6 cut(s)	64, 645, 646, 1367, 1646, 2457
PspOMI	GGGCCC	1 cut(s)	2455
PspPI	GGNCC	8 cut(s)	408, 644, 1644, 1999, 2222, 2243, 2455, 2456
PspPPI	RGGWCCY	1 cut(s)	644
PsrI	GAACNNNNNNTAC	2 cut(s)	1358, 1390
PstI	CTGCAG	1 cut(s)	2059
PsuI	RGATCY	4 cut(s)	352, 791, 1561, 1638
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	1808
RsaI	GTAC	4 cut(s)	80, 874, 1314, 2355
RsaNI	GTAC	4 cut(s)	79, 873, 1313, 2354
RseI	CAYNNNNRTG	2 cut(s)	1118, 1443
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	6 cut(s)	620, 900, 1142, 1749, 1842, 1886
Sau96I	GGNCC	8 cut(s)	408, 644, 1644, 1999, 2222, 2243, 2455, 2456
ScaI	AGTACT	2 cut(s)	1314, 2355
SchI	GAGTC	4 cut(s)	199, 812, 1195, 2037
ScrFI	CCNGG	4 cut(s)	754, 959, 1362, 1533
SduI	GDGCHC	3 cut(s)	129, 871, 2459
SfaNI	GCATC	8 cut(s)	854, 1447, 1466, 1499, 1937, 2145, 2155, 2349
SfcI	CTRYAG	3 cut(s)	811, 1224, 2055
SfuI	TTCGAA	1 cut(s)	2474
SgrDI	CGTCGACG	1 cut(s)	236
SinI	GGWCC	6 cut(s)	408, 644, 1644, 1999, 2222, 2243
SmiMI	CAYNNNNRTG	2 cut(s)	1118, 1443
SmlI	CTYRAG	2 cut(s)	29, 494
SmoI	CTYRAG	2 cut(s)	29, 494
SpeI	ACTAGT	1 cut(s)	1315
SphI	GCATGC	2 cut(s)	1349, 1675
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	9 cut(s)	11, 17, 169, 350, 416, 842, 1006, 2110, 2173
SspMI	CTAG	4 cut(s)	1316, 1649, 1902, 2240
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	4 cut(s)	752, 957, 1360, 1531
StyI	CCWWGG	1 cut(s)	2091
TaaI	ACNGT	3 cut(s)	866, 2188, 2481
TaqI	TCGA	7 cut(s)	237, 264, 336, 777, 1938, 2299, 2474
TaqII	GACCGA	1 cut(s)	122
TatI	WGTACW	2 cut(s)	1312, 2353
TauI	GCSGC	4 cut(s)	14, 20, 418, 845
TfiI	GAWTC	2 cut(s)	214, 1265
Tru1I	TTAA	6 cut(s)	620, 900, 1142, 1749, 1842, 1886
Tru9I	TTAA	6 cut(s)	620, 900, 1142, 1749, 1842, 1886
TscAI	CASTG	2 cut(s)	334, 1868
TseFI	GTSAC	2 cut(s)	478, 804
TseI	GCWGC	8 cut(s)	14, 46, 521, 727, 839, 1067, 1763, 1808
Tsp45I	GTSAC	2 cut(s)	478, 804
TspDTI	ATGAA	5 cut(s)	334, 600, 782, 1102, 2058
TspRI	CASTG	2 cut(s)	334, 1868
Tth111I	GACNNNGTC	1 cut(s)	242
Van91I	CCANNNNNTGG	2 cut(s)	1361, 2083
VneI	GTGCAC	1 cut(s)	867
VpaK11BI	GGWCC	6 cut(s)	408, 644, 1644, 1999, 2222, 2243
XapI	RAATTY	6 cut(s)	323, 531, 705, 1589, 1744, 1821
XceI	RCATGY	2 cut(s)	1349, 1675
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1142, 1475
XmiI	GTMKAC	2 cut(s)	237, 861
XmnI	GAANNNNTTC	1 cut(s)	1856
XspI	CTAG	4 cut(s)	1316, 1649, 1902, 2240
ZraI	GACGTC	1 cut(s)	244
ZrmI	AGTACT	2 cut(s)	1314, 2355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.