Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000993

Physical Location & Seq

Genomic Coordinates Reverse (-)

58713787 .. 58717419

Gene Structure 3633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG350200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCAAGAGAGATGGCAGTTGCAGCTAAGGAAAGTTCTAGACGGCTTCAGGTGGCTTTGTCTGCTTCATGTTATGACTTCGGAAGAAAGGAAAAGAATTCTACTGGCTATAGCTGATGCGCTTGAAGGAAATTCGCATATAATCCATGTAGAAAATGAAGCTGATGTATGTGCAGCAGAACATGCTGGATATGAAAAATCCTTGATATCTCGGCTAGCTCTAAGCCCTGGGAAGATCACACGTCTTGCAAACAACATTCGTGTACTTGCAAACATGGAAGATCCAATTGGCCGCCTTTCAAGAAAAACTCAGCTTGCAGATGGACTCATCTTAGAGAAAACATCATGTCCACTGGGCGTTCTCTTGGTTATATTTGAGTCTCATCCTGATGCACTAATACAGATGGCTACCTTGGCAATTGTTACAGAAACCATCCCAGACAGTGTTGGTCAGAAGCTAATTGGACTTGTGACTTCTAGAGATGAGATTCCAGATCTGCTAAAGCTTGACGACAACCTGATCAATCTTGTGATCCCAAGAGGCAGCAACAAGCTGGTGTCTCAAATAAAGAGTTTGACCAAGATTCCAGTCCTGGGGCATGCTGATGGAGTATGCCATGTGGTTATTGACAAGTCCGCTAATATGGATATGGCAAAGCAAATTGTTTTAGATGCAAAAATAGATTATCAAGCAGCCTGCAATGCAATGGAAACACTTCTGGTCCATAAGGATTTAATGCATACAGCAGAGTTCAATGATCTCATTGTTCAGCTTCGCCATAAAGGTGTGAATTTGTTTGGTGGACCGGGGGCAAGCTCCTTGCTCAATATTCCTCGGGATTCATTACATATTGAGTACAGTTCCATGGCCTGCACTGTTGAGGTTGTCGATGAAGTTCATGCAGCCATTGAGCATATAAATAAAAACGGAGGTGCACATACTGATTGCATCATTGCAGAAGACCAAGAAGTTGTGGAAACTTTTTTAGGTCAAGTTGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

334

Amino Acids

36.75

Weight (kDa)

5.51

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39800 AT2G39800 AT2G39800 AT2G39800 AT3G55610 AT3G55610
fragaria_vesca	FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_7g23420 FvH4_7g23420 FvH4_7g23420 FvH4_7g23430
malus_domestica	MD00G1141100.v1.1 MD01G1140200.v1.1 MD04G1136200.v1.1 MD07G1204500.v1.1 MD12G1150700.v1.1
prunus_persica	Prupe.2G240800_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1
pyrus_communis	pycom01g16070 pycom04g12400 pycom07g19110 pycom12g14450
rosa_chinensis	RchiOBHm_Chr1g0368541 RchiOBHm_Chr1g0368561 RchiOBHm_Chr3g0465091
rosa_laevigata	RLG00000024656 RLG00000027203 RLG00000027204
rosa_multiflora	Rmu_co8458369.1_g000001 Rmu_co8474891.1_g000001 Rmu_sc0003386.1_g000013 Rmu_sc0011394.1_g000007
rosa_roxburghii	Rroxscaffold_4G00288440 Rroxscaffold_4G00288450 Rroxscaffold_6G00415250
rosa_rugosa	Rorug01G0342800 Rorug01G0342900 Rorug03G0075300 Rorug03G0075400
rosa_samantha	Rh1AG350100 Rh1AG350200 Rh1BG313300 Rh1BG313400 Rh1CG328000 Rh1CG328100 Rh1DG344700 Rh1DG344800 Rh3BG139000 Rh3CG141100 Rh3CG149400 Rh3DG140200
rosa_wichuraiana	Rw3G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	292, 636
AclWI	GGATC	2 cut(s)	275, 526
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	3 cut(s)	96, 130, 790
AcuI	CTGAAG	1 cut(s)	31
AfaI	GTAC	2 cut(s)	264, 857
AfiI	CCNNNNNNNGG	1 cut(s)	593
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	125, 300, 754
AjiI	CACGTC	1 cut(s)	242
AjnI	CCWGG	2 cut(s)	226, 591
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
Alw21I	GWGCWC	1 cut(s)	937
Alw26I	GTCTC	2 cut(s)	384, 564
Alw44I	GTGCAC	1 cut(s)	933
AlwI	GGATC	2 cut(s)	275, 526
Ama87I	CYCGRG	1 cut(s)	834
AoxI	GGCC	2 cut(s)	289, 867
ApaLI	GTGCAC	1 cut(s)	933
ApeKI	GCWGC	5 cut(s)	22, 173, 543, 692, 902
ApoI	RAATTY	3 cut(s)	96, 130, 790
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	721, 803
AsuC2I	CCSGG	1 cut(s)	807
AsuNHI	GCTAGC	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	834
AvaII	GGWCC	2 cut(s)	721, 803
BaeGI	GKGCMC	1 cut(s)	937
BbsI	GAAGAC	1 cut(s)	966
Bbv12I	GWGCWC	1 cut(s)	937
BbvI	GCAGC	5 cut(s)	34, 185, 555, 704, 914
BccI	CCATC	5 cut(s)	6, 314, 397, 440, 599
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	2 cut(s)	228, 593
BclI	TGATCA	1 cut(s)	519
BcnI	CCSGG	1 cut(s)	807
BcoDI	GTCTC	2 cut(s)	384, 564
BfaI	CTAG	3 cut(s)	38, 215, 477
BfmI	CTRYAG	1 cut(s)	108
BglII	AGATCT	1 cut(s)	493
BisI	GCNGC	6 cut(s)	23, 174, 292, 544, 693, 903
BlsI	GCNGC	6 cut(s)	24, 175, 293, 545, 694, 904
Bme1390I	CCNGG	3 cut(s)	228, 593, 807
Bme18I	GGWCC	2 cut(s)	721, 803
BmeT110I	CYCGRG	1 cut(s)	834
BmgBI	CACGTC	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	721, 803
BmrFI	CCNGG	3 cut(s)	228, 593, 807
BmrI	ACTGGG	1 cut(s)	362
BmsI	GCATC	4 cut(s)	106, 379, 661, 957
BmtI	GCTAGC	1 cut(s)	218
BmuI	ACTGGG	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	966
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	807
BsaJI	CCNNGG	7 cut(s)	226, 227, 411, 592, 806, 833, 864
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse1I	ACTGG	3 cut(s)	108, 357, 587
Bse3DI	GCAATG	3 cut(s)	706, 711, 951
BseBI	CCWGG	2 cut(s)	228, 593
BseDI	CCNNGG	7 cut(s)	226, 227, 411, 592, 806, 833, 864
BseGI	GGATG	2 cut(s)	382, 432
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMI	GCAATG	3 cut(s)	706, 711, 951
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	3 cut(s)	108, 357, 587
BseSI	GKGCMC	1 cut(s)	937
BseXI	GCAGC	5 cut(s)	34, 185, 555, 704, 914
BsgI	GTGCAG	2 cut(s)	192, 856
BshFI	GGCC	2 cut(s)	291, 869
BsiHKAI	GWGCWC	1 cut(s)	937
BsiHKCI	CYCGRG	1 cut(s)	834
BsiSI	CCGG	1 cut(s)	806
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	2 cut(s)	384, 564
BsnI	GGCC	2 cut(s)	291, 869
BsoBI	CYCGRG	1 cut(s)	834
Bsp1286I	GDGCHC	1 cut(s)	937
Bsp143I	GATC	6 cut(s)	234, 280, 493, 519, 531, 757
Bsp19I	CCATGG	1 cut(s)	864
BspACI	CCGC	2 cut(s)	292, 636
BspANI	GGCC	2 cut(s)	291, 869
BspCNI	CTCAG	1 cut(s)	322
BspOI	GCTAGC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	275, 526
BsrDI	GCAATG	3 cut(s)	706, 711, 951
BsrI	ACTGG	3 cut(s)	108, 357, 587
BssECI	CCNNGG	7 cut(s)	226, 227, 411, 592, 806, 833, 864
BssMI	GATC	6 cut(s)	234, 280, 493, 519, 531, 757
BssT1I	CCWWGG	2 cut(s)	411, 864
Bst2UI	CCWGG	2 cut(s)	228, 593
Bst4CI	ACNGT	3 cut(s)	443, 860, 877
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	6 cut(s)	216, 315, 600, 697, 814, 871
BstDEI	CTNAG	4 cut(s)	26, 221, 309, 331
BstDSI	CCRYGG	1 cut(s)	864
BstF5I	GGATG	2 cut(s)	382, 432
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	6 cut(s)	237, 283, 496, 522, 534, 760
BstMAI	GTCTC	2 cut(s)	384, 564
BstMBI	GATC	6 cut(s)	234, 280, 493, 519, 531, 757
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 61, 182, 413, 701
BstNI	CCWGG	2 cut(s)	228, 593
BstNSI	RCATGY	2 cut(s)	185, 602
BstSCI	CCNGG	3 cut(s)	226, 591, 805
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	937
BstV1I	GCAGC	5 cut(s)	34, 185, 555, 704, 914
BstV2I	GAAGAC	1 cut(s)	966
BstX2I	RGATCY	2 cut(s)	280, 493
BstYI	RGATCY	2 cut(s)	280, 493
BsuRI	GGCC	2 cut(s)	291, 869
BtgI	CCRYGG	1 cut(s)	864
BtrI	CACGTC	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	382, 432
BtsIMutI	CAGTG	3 cut(s)	350, 448, 873
Cac8I	GCNNGC	6 cut(s)	216, 315, 600, 697, 814, 871
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	721, 803
Csp6I	GTAC	2 cut(s)	263, 856
CviAII	CATG	9 cut(s)	68, 146, 182, 274, 345, 599, 617, 865, 899
CviQI	GTAC	2 cut(s)	263, 856
DdeI	CTNAG	4 cut(s)	26, 221, 309, 331
DpnI	GATC	6 cut(s)	236, 282, 495, 521, 533, 759
DpnII	GATC	6 cut(s)	234, 280, 493, 519, 531, 757
EaeI	YGGCCR	1 cut(s)	289
Eco130I	CCWWGG	2 cut(s)	411, 864
Eco32I	GATATC	1 cut(s)	207
Eco47I	GGWCC	2 cut(s)	721, 803
Eco57I	CTGAAG	1 cut(s)	31
Eco88I	CYCGRG	1 cut(s)	834
EcoRI	GAATTC	1 cut(s)	96
EcoRII	CCWGG	2 cut(s)	226, 591
EcoRV	GATATC	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	411, 864
EcoT22I	ATGCAT	1 cut(s)	741
ErhI	CCWWGG	2 cut(s)	411, 864
FaeI	CATG	9 cut(s)	71, 149, 185, 277, 348, 602, 620, 868, 902
FatI	CATG	9 cut(s)	67, 145, 181, 273, 344, 598, 616, 864, 898
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	6 cut(s)	23, 174, 292, 544, 693, 903
FokI	GGATG	2 cut(s)	369, 419
Fsp4HI	GCNGC	6 cut(s)	23, 174, 292, 544, 693, 903
FspBI	CTAG	3 cut(s)	38, 215, 477
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	6 cut(s)	23, 174, 292, 544, 693, 903
HaeIII	GGCC	2 cut(s)	291, 869
HapII	CCGG	1 cut(s)	806
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	9 cut(s)	71, 149, 185, 277, 348, 602, 620, 868, 902
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	5 cut(s)	324, 377, 487, 583, 839
HpaII	CCGG	1 cut(s)	806
Hpy166II	GTNNAC	5 cut(s)	263, 350, 803, 935, 997
Hpy188I	TCNGA	2 cut(s)	82, 453
Hpy188III	TCNNGA	6 cut(s)	38, 300, 386, 477, 491, 836
Hpy8I	GTNNAC	5 cut(s)	263, 350, 803, 935, 997
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	3 cut(s)	443, 860, 877
HpyCH4IV	ACGT	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 61, 182, 413, 701
HpyF3I	CTNAG	4 cut(s)	26, 221, 309, 331
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	9 cut(s)	71, 149, 185, 277, 348, 602, 620, 868, 902
HspAI	GCGC	1 cut(s)	119
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	6 cut(s)	234, 280, 493, 519, 531, 757
LmnI	GCTCC	1 cut(s)	821
Lsp1109I	GCAGC	5 cut(s)	34, 185, 555, 704, 914
LweI	GCATC	4 cut(s)	106, 379, 661, 957
MaeI	CTAG	3 cut(s)	38, 215, 477
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	2 cut(s)	421, 469
MalI	GATC	6 cut(s)	236, 282, 495, 521, 533, 759
MboI	GATC	6 cut(s)	234, 280, 493, 519, 531, 757
MboII	GAAGA	4 cut(s)	95, 244, 290, 971
MfeI	CAATTG	2 cut(s)	285, 417
MflI	RGATCY	2 cut(s)	280, 493
MhlI	GDGCHC	1 cut(s)	937
MluCI	AATT	7 cut(s)	96, 130, 285, 417, 459, 660, 790
MlyI	GAGTC	2 cut(s)	318, 386
MnlI	CCTC	4 cut(s)	533, 843, 874, 923
Mph1103I	ATGCAT	1 cut(s)	741
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	1 cut(s)	734
MslI	CAYNNNNRTG	3 cut(s)	387, 603, 783
MspI	CCGG	1 cut(s)	806
MspR9I	CCNGG	3 cut(s)	228, 593, 807
MunI	CAATTG	2 cut(s)	285, 417
MvaI	CCWGG	2 cut(s)	228, 593
MwoI	GCNNNNNNNGC	5 cut(s)	22, 61, 182, 413, 701
NciI	CCSGG	1 cut(s)	807
NcoI	CCATGG	1 cut(s)	864
NdeII	GATC	6 cut(s)	234, 280, 493, 519, 531, 757
NheI	GCTAGC	1 cut(s)	214
NlaIII	CATG	9 cut(s)	71, 149, 185, 277, 348, 602, 620, 868, 902
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	469
NsiI	ATGCAT	1 cut(s)	741
NspI	RCATGY	2 cut(s)	185, 602
PaeI	GCATGC	1 cut(s)	602
PasI	CCCWGGG	1 cut(s)	227
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	3 cut(s)	487, 583, 839
PkrI	GCNGC	6 cut(s)	24, 175, 293, 545, 694, 904
PleI	GAGTC	2 cut(s)	318, 385
PpsI	GAGTC	2 cut(s)	318, 385
Psp6I	CCWGG	2 cut(s)	226, 591
PspGI	CCWGG	2 cut(s)	226, 591
PspPI	GGNCC	2 cut(s)	721, 803
PsuI	RGATCY	2 cut(s)	280, 493
RsaI	GTAC	2 cut(s)	264, 857
RsaNI	GTAC	2 cut(s)	263, 856
RseI	CAYNNNNRTG	3 cut(s)	387, 603, 783
SaqAI	TTAA	1 cut(s)	734
SatI	GCNGC	6 cut(s)	23, 174, 292, 544, 693, 903
Sau3AI	GATC	6 cut(s)	234, 280, 493, 519, 531, 757
Sau96I	GGNCC	2 cut(s)	721, 803
SchI	GAGTC	2 cut(s)	318, 386
ScrFI	CCNGG	3 cut(s)	228, 593, 807
SduI	GDGCHC	1 cut(s)	937
SfaNI	GCATC	4 cut(s)	106, 379, 661, 957
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	2 cut(s)	721, 803
SmiMI	CAYNNNNRTG	3 cut(s)	387, 603, 783
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	7 cut(s)	96, 130, 285, 417, 459, 660, 790
SsiI	CCGC	2 cut(s)	292, 636
SspI	AATATT	1 cut(s)	829
SspMI	CTAG	3 cut(s)	38, 215, 477
StyD4I	CCNGG	3 cut(s)	226, 591, 805
StyI	CCWWGG	2 cut(s)	411, 864
TaaI	ACNGT	3 cut(s)	443, 860, 877
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	888
TasI	AATT	7 cut(s)	96, 130, 285, 417, 459, 660, 790
TatI	WGTACW	2 cut(s)	262, 855
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	3 cut(s)	487, 583, 839
Tru1I	TTAA	1 cut(s)	734
Tru9I	TTAA	1 cut(s)	734
TscAI	CASTG	3 cut(s)	357, 448, 880
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	5 cut(s)	22, 173, 543, 692, 902
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	6 cut(s)	56, 171, 207, 831, 887, 906
TspGWI	ACGGA	1 cut(s)	942
TspRI	CASTG	3 cut(s)	357, 448, 880
VneI	GTGCAC	1 cut(s)	933
VpaK11BI	GGWCC	2 cut(s)	721, 803
XapI	RAATTY	3 cut(s)	96, 130, 790
XbaI	TCTAGA	2 cut(s)	37, 476
XceI	RCATGY	2 cut(s)	185, 602
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	3 cut(s)	38, 215, 477
Zsp2I	ATGCAT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.