Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000993

Physical Location & Seq

Genomic Coordinates Reverse (-)

56859332 .. 56863588

Gene Structure 4257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG344800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGACTTCAGAAGAAAGGAAAAGAATTCTACTGGATATAGCTGATGTGCTTGAAGGAAATTCACATATAATCCATGTAGAAAATGAAGCTAATGTATGTGAAGCAGAACATGCTGGATATGAAAAATCTTTGATATCTCGGCTAGCTCTAAGCCCTGGGAAGATCACACGTCTTGCAAACAACATTCGTGTACTTGCAAACATGGAAGATCCAATTGGCCGCCTTTCAAGAAAAACTCAGCTTGCAGATGGCCTCATCCTAGAGAAAACATCATGTCCACTGGGCGTTCTCTTGGTTATATTTGAGTCTCATCCTGATGCACTAATACAGATAGCTACCTTGGCAATCCGAAATGGGAATTGGCTTCTCTTGAAGGATGGGAAGGAGATTATTTCAGAAACCATCCCAGACAGTGTTGGTCAGAAGCTAATTGGACTTGTGACTTCTAGAGATGAGATTCCAGATCTGCTAAAGCTTGACGACAACCTGATCAATCTTGTGATCCCAAGAGGCAGCAACAAGCTGGTGTCTCAAATAAAGAGTTTGACCAAGATTCCAGTCCTGGGGCATGCTGATGGAGTATGCCATGTGTTTATTGACAAGTCCGCTAATATGGATATGGCAAAGCAAATTGTTTTAGATGCAAAAATAGATTATCCAGCAGCCTGCAATGCAATGGAAACACTTCTGGTCTATAAGGATTTAATGCATACAGCAGAGTTCAATGATCTCATTGTTCAGCTTCGCCAAAAAGGTGTGACTTTGTTTGGTGGACCGAGGGCAAGCTCCTTGCTCAATATTCCTCGGGCAGATTCATTACATATTGAGTACAGTTACATAGCCTGCACTGTTGAGGTTGTCGATGAAGTTCATGCAGCCATTGAGCATATAAATAAAAACGGAAGTGCACATACTGATTGCATCATTGCAGAAGACCAAGAAGTTGTGGAAACTTTTTTAGGTCAAGTTGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

325

Amino Acids

35.73

Weight (kDa)

5.23

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39800 AT2G39800 AT2G39800 AT2G39800 AT3G55610 AT3G55610
fragaria_vesca	FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_7g23420 FvH4_7g23420 FvH4_7g23420 FvH4_7g23430
malus_domestica	MD00G1141100.v1.1 MD01G1140200.v1.1 MD04G1136200.v1.1 MD07G1204500.v1.1 MD12G1150700.v1.1
prunus_persica	Prupe.2G240800_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1
pyrus_communis	pycom01g16070 pycom04g12400 pycom07g19110 pycom12g14450
rosa_chinensis	RchiOBHm_Chr1g0368541 RchiOBHm_Chr1g0368561 RchiOBHm_Chr3g0465091
rosa_laevigata	RLG00000024656 RLG00000027203 RLG00000027204
rosa_multiflora	Rmu_co8458369.1_g000001 Rmu_co8474891.1_g000001 Rmu_sc0003386.1_g000013 Rmu_sc0011394.1_g000007
rosa_roxburghii	Rroxscaffold_4G00288440 Rroxscaffold_4G00288450 Rroxscaffold_6G00415250
rosa_rugosa	Rorug01G0342800 Rorug01G0342900 Rorug03G0075300 Rorug03G0075400
rosa_samantha	Rh1AG350100 Rh1AG350200 Rh1BG313300 Rh1BG313400 Rh1CG328000 Rh1CG328100 Rh1DG344700 Rh1DG344800 Rh3BG139000 Rh3CG141100 Rh3CG149400 Rh3DG140200
rosa_wichuraiana	Rw3G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	220, 606
AclWI	GGATC	2 cut(s)	203, 496
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	2 cut(s)	24, 58
AfaI	GTAC	2 cut(s)	192, 830
AfiI	CCNNNNNNNGG	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	167
AgsI	TTSAA	4 cut(s)	53, 228, 373, 724
AjiI	CACGTC	1 cut(s)	170
AjnI	CCWGG	2 cut(s)	154, 561
AjuI	GAANNNNNNNTTGG	4 cut(s)	198, 230, 343, 375
Alw21I	GWGCWC	1 cut(s)	910
Alw26I	GTCTC	2 cut(s)	312, 534
Alw44I	GTGCAC	1 cut(s)	906
AlwI	GGATC	2 cut(s)	203, 496
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	2 cut(s)	217, 250
ApaLI	GTGCAC	1 cut(s)	906
ApeKI	GCWGC	3 cut(s)	513, 662, 875
ApoI	RAATTY	2 cut(s)	24, 58
Asp700I	GAANNNNTTC	1 cut(s)	684
AspS9I	GGNCC	1 cut(s)	773
AsuNHI	GCTAGC	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	804
AvaII	GGWCC	1 cut(s)	773
BaeGI	GKGCMC	1 cut(s)	910
BarI	GAAGNNNNNNTAC	2 cut(s)	895, 927
BbsI	GAAGAC	1 cut(s)	939
Bbv12I	GWGCWC	1 cut(s)	910
BbvI	GCAGC	3 cut(s)	525, 674, 887
BccI	CCATC	4 cut(s)	242, 371, 410, 569
BciT130I	CCWGG	2 cut(s)	156, 563
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	2 cut(s)	312, 534
BfaI	CTAG	3 cut(s)	143, 260, 447
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	4 cut(s)	220, 514, 663, 876
BlsI	GCNGC	4 cut(s)	221, 515, 664, 877
Bme1390I	CCNGG	2 cut(s)	156, 563
Bme18I	GGWCC	1 cut(s)	773
BmeT110I	CYCGRG	1 cut(s)	804
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	773
BmrFI	CCNGG	2 cut(s)	156, 563
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	3 cut(s)	307, 631, 930
BmtI	GCTAGC	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	939
BsaJI	CCNNGG	6 cut(s)	154, 155, 339, 562, 776, 803
Bsc4I	CCNNNNNNNGG	1 cut(s)	563
Bse1I	ACTGG	3 cut(s)	36, 285, 557
Bse3DI	GCAATG	3 cut(s)	676, 681, 924
BseBI	CCWGG	2 cut(s)	156, 563
BseDI	CCNNGG	6 cut(s)	154, 155, 339, 562, 776, 803
BseGI	GGATG	4 cut(s)	255, 310, 382, 402
BseLI	CCNNNNNNNGG	1 cut(s)	563
BseMI	GCAATG	3 cut(s)	676, 681, 924
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	3 cut(s)	36, 285, 557
BseSI	GKGCMC	1 cut(s)	910
BseXI	GCAGC	3 cut(s)	525, 674, 887
BsgI	GTGCAG	1 cut(s)	829
BshFI	GGCC	2 cut(s)	219, 252
BsiHKAI	GWGCWC	1 cut(s)	910
BsiHKCI	CYCGRG	1 cut(s)	804
BslI	CCNNNNNNNGG	1 cut(s)	563
BsmAI	GTCTC	2 cut(s)	312, 534
BsnI	GGCC	2 cut(s)	219, 252
BsoBI	CYCGRG	1 cut(s)	804
Bsp1286I	GDGCHC	1 cut(s)	910
Bsp143I	GATC	6 cut(s)	162, 208, 463, 489, 501, 727
BspACI	CCGC	2 cut(s)	220, 606
BspANI	GGCC	2 cut(s)	219, 252
BspCNI	CTCAG	1 cut(s)	250
BspOI	GCTAGC	1 cut(s)	146
BspPI	GGATC	2 cut(s)	203, 496
BsrDI	GCAATG	3 cut(s)	676, 681, 924
BsrI	ACTGG	3 cut(s)	36, 285, 557
BssECI	CCNNGG	6 cut(s)	154, 155, 339, 562, 776, 803
BssMI	GATC	6 cut(s)	162, 208, 463, 489, 501, 727
BssT1I	CCWWGG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	156, 563
Bst4CI	ACNGT	3 cut(s)	413, 833, 850
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	6 cut(s)	144, 243, 570, 667, 784, 844
BstDEI	CTNAG	2 cut(s)	149, 237
BstF5I	GGATG	4 cut(s)	255, 310, 382, 402
BstKTI	GATC	6 cut(s)	165, 211, 466, 492, 504, 730
BstMAI	GTCTC	2 cut(s)	312, 534
BstMBI	GATC	6 cut(s)	162, 208, 463, 489, 501, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 341, 671
BstNI	CCWGG	2 cut(s)	156, 563
BstNSI	RCATGY	2 cut(s)	113, 572
BstSCI	CCNGG	2 cut(s)	154, 561
BstSLI	GKGCMC	1 cut(s)	910
BstV1I	GCAGC	3 cut(s)	525, 674, 887
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	2 cut(s)	208, 463
BstYI	RGATCY	2 cut(s)	208, 463
BsuRI	GGCC	2 cut(s)	219, 252
BtrI	CACGTC	1 cut(s)	170
BtsCI	GGATG	4 cut(s)	255, 310, 382, 402
BtsIMutI	CAGTG	3 cut(s)	278, 418, 846
Cac8I	GCNNGC	6 cut(s)	144, 243, 570, 667, 784, 844
Cfr13I	GGNCC	1 cut(s)	773
Csp6I	GTAC	2 cut(s)	191, 829
CviAII	CATG	7 cut(s)	74, 110, 202, 273, 569, 587, 872
CviQI	GTAC	2 cut(s)	191, 829
DdeI	CTNAG	2 cut(s)	149, 237
DpnI	GATC	6 cut(s)	164, 210, 465, 491, 503, 729
DpnII	GATC	6 cut(s)	162, 208, 463, 489, 501, 727
EaeI	YGGCCR	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	773
Eco88I	CYCGRG	1 cut(s)	804
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	2 cut(s)	154, 561
EcoRV	GATATC	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	339
EcoT22I	ATGCAT	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	7 cut(s)	77, 113, 205, 276, 572, 590, 875
FatI	CATG	7 cut(s)	73, 109, 201, 272, 568, 586, 871
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	4 cut(s)	220, 514, 663, 876
FokI	GGATG	4 cut(s)	242, 297, 389, 389
Fsp4HI	GCNGC	4 cut(s)	220, 514, 663, 876
FspBI	CTAG	3 cut(s)	143, 260, 447
GluI	GCNGC	4 cut(s)	220, 514, 663, 876
HaeIII	GGCC	2 cut(s)	219, 252
Hin1II	CATG	7 cut(s)	77, 113, 205, 276, 572, 590, 875
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	4 cut(s)	305, 457, 553, 812
Hpy166II	GTNNAC	5 cut(s)	191, 278, 773, 908, 970
Hpy188I	TCNGA	4 cut(s)	10, 350, 397, 423
Hpy188III	TCNNGA	5 cut(s)	228, 314, 370, 447, 461
Hpy8I	GTNNAC	5 cut(s)	191, 278, 773, 908, 970
HpyAV	CCTTC	3 cut(s)	47, 367, 376
HpyCH4III	ACNGT	3 cut(s)	413, 833, 850
HpyCH4IV	ACGT	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 341, 671
HpyF3I	CTNAG	2 cut(s)	149, 237
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	7 cut(s)	77, 113, 205, 276, 572, 590, 875
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	6 cut(s)	162, 208, 463, 489, 501, 727
LmnI	GCTCC	1 cut(s)	791
Lsp1109I	GCAGC	3 cut(s)	525, 674, 887
LweI	GCATC	3 cut(s)	307, 631, 930
MaeI	CTAG	3 cut(s)	143, 260, 447
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	3 cut(s)	439, 757, 833
MalI	GATC	6 cut(s)	164, 210, 465, 491, 503, 729
MboI	GATC	6 cut(s)	162, 208, 463, 489, 501, 727
MboII	GAAGA	4 cut(s)	23, 172, 218, 944
MfeI	CAATTG	1 cut(s)	213
MflI	RGATCY	2 cut(s)	208, 463
MhlI	GDGCHC	1 cut(s)	910
MluCI	AATT	6 cut(s)	24, 58, 213, 358, 429, 630
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	5 cut(s)	263, 503, 771, 813, 847
Mph1103I	ATGCAT	1 cut(s)	711
MroXI	GAANNNNTTC	1 cut(s)	684
MseI	TTAA	1 cut(s)	704
MslI	CAYNNNNRTG	2 cut(s)	315, 573
MspR9I	CCNGG	2 cut(s)	156, 563
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	2 cut(s)	156, 563
MwoI	GCNNNNNNNGC	3 cut(s)	110, 341, 671
NdeII	GATC	6 cut(s)	162, 208, 463, 489, 501, 727
NheI	GCTAGC	1 cut(s)	142
NlaIII	CATG	7 cut(s)	77, 113, 205, 276, 572, 590, 875
NmeAIII	GCCGAG	1 cut(s)	118
NmuCI	GTSAC	2 cut(s)	439, 757
NsiI	ATGCAT	1 cut(s)	711
NspI	RCATGY	2 cut(s)	113, 572
PaeI	GCATGC	1 cut(s)	572
PasI	CCCWGGG	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	3 cut(s)	457, 553, 812
PkrI	GCNGC	4 cut(s)	221, 515, 664, 877
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp6I	CCWGG	2 cut(s)	154, 561
PspGI	CCWGG	2 cut(s)	154, 561
PspPI	GGNCC	1 cut(s)	773
PsuI	RGATCY	2 cut(s)	208, 463
RsaI	GTAC	2 cut(s)	192, 830
RsaNI	GTAC	2 cut(s)	191, 829
RseI	CAYNNNNRTG	2 cut(s)	315, 573
SaqAI	TTAA	1 cut(s)	704
SatI	GCNGC	4 cut(s)	220, 514, 663, 876
Sau3AI	GATC	6 cut(s)	162, 208, 463, 489, 501, 727
Sau96I	GGNCC	1 cut(s)	773
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	156, 563
SduI	GDGCHC	1 cut(s)	910
SfaNI	GCATC	3 cut(s)	307, 631, 930
SinI	GGWCC	1 cut(s)	773
SmiMI	CAYNNNNRTG	2 cut(s)	315, 573
SphI	GCATGC	1 cut(s)	572
Sse9I	AATT	6 cut(s)	24, 58, 213, 358, 429, 630
SsiI	CCGC	2 cut(s)	220, 606
SspI	AATATT	1 cut(s)	799
SspMI	CTAG	3 cut(s)	143, 260, 447
StyD4I	CCNGG	2 cut(s)	154, 561
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	3 cut(s)	413, 833, 850
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	1 cut(s)	861
TaqII	GACCGA	1 cut(s)	790
TasI	AATT	6 cut(s)	24, 58, 213, 358, 429, 630
TatI	WGTACW	2 cut(s)	190, 828
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	457, 553, 812
Tru1I	TTAA	1 cut(s)	704
Tru9I	TTAA	1 cut(s)	704
TscAI	CASTG	3 cut(s)	285, 418, 853
TseFI	GTSAC	2 cut(s)	439, 757
TseI	GCWGC	3 cut(s)	513, 662, 875
Tsp45I	GTSAC	2 cut(s)	439, 757
TspDTI	ATGAA	5 cut(s)	99, 135, 804, 860, 879
TspGWI	ACGGA	1 cut(s)	915
TspRI	CASTG	3 cut(s)	285, 418, 853
VneI	GTGCAC	1 cut(s)	906
VpaK11BI	GGWCC	1 cut(s)	773
XapI	RAATTY	2 cut(s)	24, 58
XbaI	TCTAGA	1 cut(s)	446
XceI	RCATGY	2 cut(s)	113, 572
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	3 cut(s)	143, 260, 447
Zsp2I	ATGCAT	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.