Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003386.1

Orthogroup ID

OG0000993

Physical Location & Seq

Genomic Coordinates Reverse (-)

52088 .. 57015

Gene Structure 4928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003386.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

atggaccctgtggatcctacgcgagcttttgtcaagaatgtcaagcgtatcatcgtcaaggttggaactgctgtggtcactcgtggtgatggaagactggcattgggtagactaggatctctttgtgagcagcttaaagatataaattctcagggctatgaggttattttggtgacatcaggagctgttgggcttggccgtcaaaggctgagatacaggagattggcaaatagcagctttgctgatctccaaaacccacaaaatgattttgatggaaaggcttgtgcagctgttggacagagtagcctcatggctctttatgatgccatgttcagccagcttgatgtgacttcttctcagcttctcgtgacagatagtgttttcagggatgaagctttcagaaagcagctctctgaaactgtgaagtccttgttaaaactgagggttattcccatattcaacgaaaatgatgcagttagtactaggaaggccccttatgaggactcttctggtatattttgggacaatgatagtttggctggtctattggccctcgaactgaaggctgatcttcttgtgttgctaagtgatgtagagggtctctacagtggtcctcccactgatccaaagtcaaagttaatccgtacatacgtgaaagaaaaacatcatggagaaataacatttggagacaagtcaagggtgggcagggggggtatgaccgctaaagtcaatgctgccgtgtgtgctgcttatggtggaatccctgttgttatcactagtggctatgctaatgataacattatcaaagtgcttcaaggagaacgaattggtactgtctttcatcaagatgcacatttgtggactctggttaaagaagaatgtgcacgcgacttggctgttgcagcacgggaatgttctagaaagcttcgagctctaaactctcaggataggaggcaaatattgctcgatgtagctgatgccttggaggcaaatgaaagtgacattttagctgaaaatgaagctgatattgcagctgcgcaggaagctggatatgatggggcactaatagctcggttggccctaaagcctgggaagatttctgcacttgcaaaatctatgcgtcaacttgcagacatggaagagcccattggccaggtcttgcagaaaacagaggttgcagatggacttgtcttagagaaagtgacttgtcccttgggtgttcttttggttgtttttgagtctcgacctgatgcccttgttcagatagcttcattagcaattcaaagtcggaatggtcttctgcttaaaggtgggaaagaagccaagaggtcaaatgctatcttgcacaaggtcatcaccaaagcaatcccagatactgttggtggcaagcttattggacttgtaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004350 GO:0008150 GO:0008152 GO:0016491 GO:0016620 GO:0016903 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

469

Amino Acids

50.61

Weight (kDa)

8.09

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39800 AT2G39800 AT2G39800 AT2G39800 AT3G55610 AT3G55610
fragaria_vesca	FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_7g23420 FvH4_7g23420 FvH4_7g23420 FvH4_7g23430
malus_domestica	MD00G1141100.v1.1 MD01G1140200.v1.1 MD04G1136200.v1.1 MD07G1204500.v1.1 MD12G1150700.v1.1
prunus_persica	Prupe.2G240800_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1
pyrus_communis	pycom01g16070 pycom04g12400 pycom07g19110 pycom12g14450
rosa_chinensis	RchiOBHm_Chr1g0368541 RchiOBHm_Chr1g0368561 RchiOBHm_Chr3g0465091
rosa_laevigata	RLG00000024656 RLG00000027203 RLG00000027204
rosa_multiflora	Rmu_co8458369.1_g000001 Rmu_co8474891.1_g000001 Rmu_sc0003386.1_g000013 Rmu_sc0011394.1_g000007
rosa_roxburghii	Rroxscaffold_4G00288440 Rroxscaffold_4G00288450 Rroxscaffold_6G00415250
rosa_rugosa	Rorug01G0342800 Rorug01G0342900 Rorug03G0075300 Rorug03G0075400
rosa_samantha	Rh1AG350100 Rh1AG350200 Rh1BG313300 Rh1BG313400 Rh1CG328000 Rh1CG328100 Rh1DG344700 Rh1DG344800 Rh3BG139000 Rh3CG141100 Rh3CG149400 Rh3DG140200
rosa_wichuraiana	Rw3G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1038
AccI	GTMKAC	1 cut(s)	109
AccII	CGCG	2 cut(s)	22, 888
AciI	CCGC	1 cut(s)	720
AclWI	GGATC	4 cut(s)	8, 21, 124, 617
AcoI	YGGCCR	2 cut(s)	196, 1150
AcsI	RAATTY	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	581
AfaI	GTAC	3 cut(s)	481, 646, 832
AfiI	CCNNNNNNNGG	1 cut(s)	499
AgsI	TTSAA	3 cut(s)	460, 815, 1283
AhlI	ACTAGT	1 cut(s)	776
AjnI	CCWGG	2 cut(s)	1087, 1152
AjuI	GAANNNNNNNTTGG	4 cut(s)	666, 698, 1131, 1163
AleI	CACNNNNGTG	1 cut(s)	856
Alw21I	GWGCWC	2 cut(s)	886, 934
Alw26I	GTCTC	3 cut(s)	605, 681, 1245
Alw44I	GTGCAC	1 cut(s)	882
AlwI	GGATC	4 cut(s)	8, 21, 124, 617
AlwNI	CAGNNNCTG	2 cut(s)	185, 1376
AoxI	GGCC	5 cut(s)	196, 489, 549, 1077, 1150
ApaLI	GTGCAC	1 cut(s)	882
ApeKI	GCWGC	9 cut(s)	130, 234, 287, 406, 734, 746, 902, 1031, 1034
ApoI	RAATTY	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	1039
AspS9I	GGNCC	5 cut(s)	4, 490, 550, 611, 1078
AsuHPI	GGTGA	3 cut(s)	98, 184, 1348
AvaII	GGWCC	2 cut(s)	4, 611
BaeGI	GKGCMC	2 cut(s)	886, 1063
BalI	TGGCCA	1 cut(s)	1152
BamHI	GGATCC	1 cut(s)	13
BanII	GRGCYC	2 cut(s)	934, 1146
BauI	CACGAG	2 cut(s)	81, 365
BbsI	GAAGAC	2 cut(s)	100, 1289
Bbv12I	GWGCWC	2 cut(s)	886, 934
BbvI	GCAGC	9 cut(s)	142, 246, 299, 418, 721, 733, 914, 1021, 1043
BccI	CCATC	4 cut(s)	83, 266, 1049, 1175
BceAI	ACGGC	2 cut(s)	183, 722
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	2 cut(s)	1089, 1154
BcoDI	GTCTC	3 cut(s)	605, 681, 1245
BcuI	ACTAGT	1 cut(s)	776
BfaI	CTAG	4 cut(s)	113, 483, 777, 918
BfmI	CTRYAG	1 cut(s)	604
BglI	GCCNNNNNGGC	1 cut(s)	986
BisI	GCNGC	9 cut(s)	131, 235, 288, 407, 735, 747, 903, 1032, 1035
BlsI	GCNGC	9 cut(s)	132, 236, 289, 408, 736, 748, 904, 1033, 1036
BmcAI	AGTACT	1 cut(s)	481
Bme1390I	CCNGG	2 cut(s)	1089, 1154
Bme18I	GGWCC	2 cut(s)	4, 611
BmgT120I	GGNCC	5 cut(s)	4, 490, 550, 611, 1078
BmiI	GGNNCC	3 cut(s)	6, 15, 492
BmrFI	CCNGG	2 cut(s)	1089, 1154
BmsI	GCATC	5 cut(s)	313, 460, 838, 967, 1240
BpiI	GAAGAC	2 cut(s)	100, 1289
BsaAI	YACGTR	1 cut(s)	652
BsaI	GGTCTC	1 cut(s)	605
BsaJI	CCNNGG	3 cut(s)	981, 1088, 1212
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse1I	ACTGG	1 cut(s)	102
BseBI	CCWGG	2 cut(s)	1089, 1154
BseDI	CCNNGG	3 cut(s)	981, 1088, 1212
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMII	CTCAG	5 cut(s)	164, 200, 371, 431, 956
BseNI	ACTGG	1 cut(s)	102
BseSI	GKGCMC	2 cut(s)	886, 1063
BseXI	GCAGC	9 cut(s)	142, 246, 299, 418, 721, 733, 914, 1021, 1043
BsgI	GTGCAG	2 cut(s)	306, 1086
Bsh1236I	CGCG	2 cut(s)	22, 888
BshFI	GGCC	5 cut(s)	198, 491, 551, 1079, 1152
BsiHKAI	GWGCWC	2 cut(s)	886, 934
BslFI	GGGAC	2 cut(s)	536, 1194
BslI	CCNNNNNNNGG	1 cut(s)	499
BsmAI	GTCTC	3 cut(s)	605, 681, 1245
BsmFI	GGGAC	2 cut(s)	536, 1194
BsnI	GGCC	5 cut(s)	198, 491, 551, 1079, 1152
Bso31I	GGTCTC	1 cut(s)	605
Bsp1286I	GDGCHC	4 cut(s)	886, 934, 1063, 1146
Bsp143I	GATC	5 cut(s)	13, 116, 244, 568, 622
BspACI	CCGC	1 cut(s)	720
BspANI	GGCC	5 cut(s)	198, 491, 551, 1079, 1152
BspCNI	CTCAG	5 cut(s)	163, 201, 370, 432, 955
BspFNI	CGCG	2 cut(s)	22, 888
BspLI	GGNNCC	3 cut(s)	6, 15, 492
BspPI	GGATC	4 cut(s)	8, 21, 124, 617
BspQI	GCTCTTC	1 cut(s)	1134
BspTNI	GGTCTC	1 cut(s)	605
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	3 cut(s)	981, 1088, 1212
BssMI	GATC	5 cut(s)	13, 116, 244, 568, 622
BssSI	CACGAG	2 cut(s)	81, 365
BssT1I	CCWWGG	2 cut(s)	981, 1212
Bst2BI	CACGAG	2 cut(s)	81, 365
Bst2UI	CCWGG	2 cut(s)	1089, 1154
Bst4CI	ACNGT	4 cut(s)	421, 608, 835, 1378
Bst6I	CTCTTC	2 cut(s)	511, 1134
BstAPI	GCANNNNNTGC	1 cut(s)	961
BstBAI	YACGTR	1 cut(s)	652
BstC8I	GCNNGC	4 cut(s)	24, 338, 886, 1388
BstDEI	CTNAG	8 cut(s)	150, 209, 357, 440, 584, 942, 1192, 1407
BstF5I	GGATG	1 cut(s)	394
BstFNI	CGCG	2 cut(s)	22, 888
BstHHI	GCGC	1 cut(s)	1039
BstKTI	GATC	5 cut(s)	16, 119, 247, 571, 625
BstMAI	GTCTC	3 cut(s)	605, 681, 1245
BstMBI	GATC	5 cut(s)	13, 116, 244, 568, 622
BstNI	CCWGG	2 cut(s)	1089, 1154
BstSCI	CCNGG	2 cut(s)	1087, 1152
BstSFI	CTRYAG	1 cut(s)	604
BstSLI	GKGCMC	2 cut(s)	886, 1063
BstUI	CGCG	2 cut(s)	22, 888
BstV1I	GCAGC	9 cut(s)	142, 246, 299, 418, 721, 733, 914, 1021, 1043
BstV2I	GAAGAC	2 cut(s)	100, 1289
BstX2I	RGATCY	2 cut(s)	13, 116
BstYI	RGATCY	2 cut(s)	13, 116
BsuRI	GGCC	5 cut(s)	198, 491, 551, 1079, 1152
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	613, 618
Cac8I	GCNNGC	4 cut(s)	24, 338, 886, 1388
CaiI	CAGNNNCTG	2 cut(s)	185, 1376
CfoI	GCGC	1 cut(s)	1039
Cfr13I	GGNCC	5 cut(s)	4, 490, 550, 611, 1078
CseI	GACGC	1 cut(s)	1109
Csp6I	GTAC	3 cut(s)	480, 645, 831
CviAII	CATG	4 cut(s)	310, 328, 668, 1135
CviQI	GTAC	3 cut(s)	480, 645, 831
DdeI	CTNAG	8 cut(s)	150, 209, 357, 440, 584, 942, 1192, 1407
DpnI	GATC	5 cut(s)	15, 118, 246, 570, 624
DpnII	GATC	5 cut(s)	13, 116, 244, 568, 622
EaeI	YGGCCR	2 cut(s)	196, 1150
Eam1104I	CTCTTC	2 cut(s)	511, 1134
EarI	CTCTTC	2 cut(s)	511, 1134
Ecl136II	GAGCTC	1 cut(s)	932
Eco130I	CCWWGG	2 cut(s)	981, 1212
Eco24I	GRGCYC	2 cut(s)	934, 1146
Eco31I	GGTCTC	1 cut(s)	605
Eco47I	GGWCC	2 cut(s)	4, 611
Eco53kI	GAGCTC	1 cut(s)	932
Eco57I	CTGAAG	1 cut(s)	581
EcoICRI	GAGCTC	1 cut(s)	932
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRII	CCWGG	2 cut(s)	1087, 1152
EcoT14I	CCWWGG	2 cut(s)	981, 1212
EcoT38I	GRGCYC	2 cut(s)	934, 1146
ErhI	CCWWGG	2 cut(s)	981, 1212
FaeI	CATG	4 cut(s)	313, 331, 671, 1138
FaqI	GGGAC	2 cut(s)	536, 1194
FatI	CATG	4 cut(s)	309, 327, 667, 1134
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	9 cut(s)	131, 235, 288, 407, 735, 747, 903, 1032, 1035
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	2 cut(s)	934, 1146
Fsp4HI	GCNGC	9 cut(s)	131, 235, 288, 407, 735, 747, 903, 1032, 1035
FspBI	CTAG	4 cut(s)	113, 483, 777, 918
FspI	TGCGCA	1 cut(s)	1038
GlaI	GCGC	1 cut(s)	1038
GluI	GCNGC	9 cut(s)	131, 235, 288, 407, 735, 747, 903, 1032, 1035
HaeIII	GGCC	5 cut(s)	198, 491, 551, 1079, 1152
HgaI	GACGC	1 cut(s)	1109
HhaI	GCGC	1 cut(s)	1039
Hin1II	CATG	4 cut(s)	313, 331, 671, 1138
Hin6I	GCGC	1 cut(s)	1037
HinP1I	GCGC	1 cut(s)	1037
HincII	GTYRAC	1 cut(s)	1124
HindII	GTYRAC	1 cut(s)	1124
HindIII	AAGCTT	3 cut(s)	393, 923, 1388
HinfI	GANTC	4 cut(s)	503, 759, 862, 1238
HphI	GGTGA	3 cut(s)	98, 184, 1348
Hpy166II	GTNNAC	4 cut(s)	110, 861, 884, 1124
Hpy188I	TCNGA	4 cut(s)	401, 415, 1263, 1290
Hpy188III	TCNNGA	7 cut(s)	34, 180, 367, 845, 918, 944, 1242
Hpy8I	GTNNAC	4 cut(s)	110, 861, 884, 1124
HpyAV	CCTTC	2 cut(s)	481, 556
HpyCH4III	ACNGT	4 cut(s)	421, 608, 835, 1378
HpyCH4IV	ACGT	1 cut(s)	651
HpyF3I	CTNAG	8 cut(s)	150, 209, 357, 440, 584, 942, 1192, 1407
HpySE526I	ACGT	1 cut(s)	651
Hsp92II	CATG	4 cut(s)	313, 331, 671, 1138
HspAI	GCGC	1 cut(s)	1037
Kzo9I	GATC	5 cut(s)	13, 116, 244, 568, 622
LguI	GCTCTTC	1 cut(s)	1134
LmnI	GCTCC	1 cut(s)	182
Lsp1109I	GCAGC	9 cut(s)	142, 246, 299, 418, 721, 733, 914, 1021, 1043
LweI	GCATC	5 cut(s)	313, 460, 838, 967, 1240
MaeI	CTAG	4 cut(s)	113, 483, 777, 918
MaeII	ACGT	1 cut(s)	651
MaeIII	GTNAC	7 cut(s)	76, 172, 346, 367, 998, 1201, 1402
MalI	GATC	5 cut(s)	15, 118, 246, 570, 624
MboI	GATC	5 cut(s)	13, 116, 244, 568, 622
MboII	GAAGA	8 cut(s)	105, 345, 498, 563, 887, 1105, 1151, 1289
MflI	RGATCY	2 cut(s)	13, 116
MhlI	GDGCHC	4 cut(s)	886, 934, 1063, 1146
MlsI	TGGCCA	1 cut(s)	1152
MluCI	AATT	3 cut(s)	145, 825, 1278
MluNI	TGGCCA	1 cut(s)	1152
MlyI	GAGTC	3 cut(s)	497, 856, 1247
MmeI	TCCRAC	3 cut(s)	43, 274, 1268
Mox20I	TGGCCA	1 cut(s)	1152
MscI	TGGCCA	1 cut(s)	1152
MseI	TTAA	5 cut(s)	135, 434, 638, 870, 1305
MslI	CAYNNNNRTG	3 cut(s)	846, 856, 910
Msp20I	TGGCCA	1 cut(s)	1152
MspA1I	CMGCKG	2 cut(s)	290, 1034
MspR9I	CCNGG	2 cut(s)	1089, 1154
MvaI	CCWGG	2 cut(s)	1089, 1154
MvnI	CGCG	2 cut(s)	22, 888
NdeII	GATC	5 cut(s)	13, 116, 244, 568, 622
NlaIII	CATG	4 cut(s)	313, 331, 671, 1138
NlaIV	GGNNCC	3 cut(s)	6, 15, 492
NmuCI	GTSAC	6 cut(s)	76, 172, 346, 367, 998, 1201
NsbI	TGCGCA	1 cut(s)	1038
OliI	CACNNNNGTG	1 cut(s)	856
PciSI	GCTCTTC	1 cut(s)	1134
PfeI	GAWTC	1 cut(s)	759
PkrI	GCNGC	9 cut(s)	132, 236, 289, 408, 736, 748, 904, 1033, 1036
PleI	GAGTC	3 cut(s)	497, 856, 1246
PpsI	GAGTC	3 cut(s)	497, 856, 1246
Ppu21I	YACGTR	1 cut(s)	652
Psp124BI	GAGCTC	1 cut(s)	934
Psp6I	CCWGG	2 cut(s)	1087, 1152
PspGI	CCWGG	2 cut(s)	1087, 1152
PspN4I	GGNNCC	3 cut(s)	6, 15, 492
PspPI	GGNCC	5 cut(s)	4, 490, 550, 611, 1078
PstNI	CAGNNNCTG	2 cut(s)	185, 1376
PsuI	RGATCY	2 cut(s)	13, 116
PvuII	CAGCTG	2 cut(s)	290, 1034
RsaI	GTAC	3 cut(s)	481, 646, 832
RsaNI	GTAC	3 cut(s)	480, 645, 831
RseI	CAYNNNNRTG	3 cut(s)	846, 856, 910
SacI	GAGCTC	1 cut(s)	934
SapI	GCTCTTC	1 cut(s)	1134
SaqAI	TTAA	5 cut(s)	135, 434, 638, 870, 1305
SatI	GCNGC	9 cut(s)	131, 235, 288, 407, 735, 747, 903, 1032, 1035
Sau3AI	GATC	5 cut(s)	13, 116, 244, 568, 622
Sau96I	GGNCC	5 cut(s)	4, 490, 550, 611, 1078
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	3 cut(s)	497, 856, 1247
ScrFI	CCNGG	2 cut(s)	1089, 1154
SduI	GDGCHC	4 cut(s)	886, 934, 1063, 1146
SfaNI	GCATC	5 cut(s)	313, 460, 838, 967, 1240
SfcI	CTRYAG	1 cut(s)	604
SinI	GGWCC	2 cut(s)	4, 611
SmiMI	CAYNNNNRTG	3 cut(s)	846, 856, 910
SpeI	ACTAGT	1 cut(s)	776
Sse9I	AATT	3 cut(s)	145, 825, 1278
SsiI	CCGC	1 cut(s)	720
SspI	AATATT	1 cut(s)	960
SspMI	CTAG	4 cut(s)	113, 483, 777, 918
SstI	GAGCTC	1 cut(s)	934
StyD4I	CCNGG	2 cut(s)	1087, 1152
StyI	CCWWGG	2 cut(s)	981, 1212
TaaI	ACNGT	4 cut(s)	421, 608, 835, 1378
TaiI	ACGT	1 cut(s)	654
TaqI	TCGA	4 cut(s)	555, 928, 966, 1243
TasI	AATT	3 cut(s)	145, 825, 1278
TatI	WGTACW	1 cut(s)	479
TfiI	GAWTC	1 cut(s)	759
Tru1I	TTAA	5 cut(s)	135, 434, 638, 870, 1305
Tru9I	TTAA	5 cut(s)	135, 434, 638, 870, 1305
TscAI	CASTG	2 cut(s)	613, 625
TseFI	GTSAC	6 cut(s)	76, 172, 346, 367, 998, 1201
TseI	GCWGC	9 cut(s)	130, 234, 287, 406, 734, 746, 902, 1031, 1034
Tsp45I	GTSAC	6 cut(s)	76, 172, 346, 367, 998, 1201
TspDTI	ATGAA	5 cut(s)	405, 830, 1008, 1032, 1260
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	2 cut(s)	613, 625
VneI	GTGCAC	1 cut(s)	882
VpaK11BI	GGWCC	2 cut(s)	4, 611
XapI	RAATTY	1 cut(s)	145
XbaI	TCTAGA	1 cut(s)	917
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	4 cut(s)	113, 483, 777, 918
ZrmI	AGTACT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.