Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8458369.1

Orthogroup ID

OG0000993

Physical Location & Seq

Genomic Coordinates Reverse (-)

560 .. 1257

Gene Structure 698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8458369.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgccttgctgtgtagatggagtatgccatgtggttattgacaagtccgctaatatggatatggcaaagcaaattgttttagatgcaaaaatagattatcaagcagcctgcaatgcaatggaaacacttctggtccataaggatttaatgcatacagcagagttcaatgatctcattgttcagcttcgccataaaggtgtgaatttgtttggtggaccgggggcaagctccttgctcaatattcctcgggattcattacatattgagtacagttccatggcctgcactgttgaggttgtcgatgaagttcatgcagccattgagcatataaataaaaacggaagtgcacatactgattgcatcattgcagaagaccaagaagttgtggaaactttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

132

Amino Acids

14.43

Weight (kDa)

4.8

Isoelectric Point (pI)

55.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39800 AT2G39800 AT2G39800 AT2G39800 AT3G55610 AT3G55610
fragaria_vesca	FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_7g23420 FvH4_7g23420 FvH4_7g23420 FvH4_7g23430
malus_domestica	MD00G1141100.v1.1 MD01G1140200.v1.1 MD04G1136200.v1.1 MD07G1204500.v1.1 MD12G1150700.v1.1
prunus_persica	Prupe.2G240800_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1
pyrus_communis	pycom01g16070 pycom04g12400 pycom07g19110 pycom12g14450
rosa_chinensis	RchiOBHm_Chr1g0368541 RchiOBHm_Chr1g0368561 RchiOBHm_Chr3g0465091
rosa_laevigata	RLG00000024656 RLG00000027203 RLG00000027204
rosa_multiflora	Rmu_co8458369.1_g000001 Rmu_co8474891.1_g000001 Rmu_sc0003386.1_g000013 Rmu_sc0011394.1_g000007
rosa_roxburghii	Rroxscaffold_4G00288440 Rroxscaffold_4G00288450 Rroxscaffold_6G00415250
rosa_rugosa	Rorug01G0342800 Rorug01G0342900 Rorug03G0075300 Rorug03G0075400
rosa_samantha	Rh1AG350100 Rh1AG350200 Rh1BG313300 Rh1BG313400 Rh1CG328000 Rh1CG328100 Rh1DG344700 Rh1DG344800 Rh3BG139000 Rh3CG141100 Rh3CG149400 Rh3DG140200
rosa_wichuraiana	Rw3G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	2 cut(s)	184, 228
AluI	AGCT	2 cut(s)	184, 228
Alw21I	GWGCWC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	246
AoxI	GGCC	1 cut(s)	279
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	2 cut(s)	104, 314
ApoI	RAATTY	1 cut(s)	202
Asp700I	GAANNNNTTC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	133, 215
AsuC2I	CCSGG	1 cut(s)	219
AvaI	CYCGRG	1 cut(s)	246
AvaII	GGWCC	2 cut(s)	133, 215
BaeGI	GKGCMC	1 cut(s)	349
BarI	GAAGNNNNNNTAC	2 cut(s)	334, 366
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	116, 326
BccI	CCATC	1 cut(s)	11
BcnI	CCSGG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	105, 315
BlsI	GCNGC	2 cut(s)	106, 316
Bme1390I	CCNGG	1 cut(s)	219
Bme18I	GGWCC	2 cut(s)	133, 215
BmeT110I	CYCGRG	1 cut(s)	246
BmgT120I	GGNCC	2 cut(s)	133, 215
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	73, 369
BpiI	GAAGAC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	218, 245, 276
Bse3DI	GCAATG	3 cut(s)	118, 123, 363
BseDI	CCNNGG	3 cut(s)	218, 245, 276
BseMI	GCAATG	3 cut(s)	118, 123, 363
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	116, 326
BsgI	GTGCAG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	218
BsnI	GGCC	1 cut(s)	281
BsoBI	CYCGRG	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	169
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	281
BsrDI	GCAATG	3 cut(s)	118, 123, 363
BssECI	CCNNGG	3 cut(s)	218, 245, 276
BssMI	GATC	1 cut(s)	169
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	272, 289
BstC8I	GCNNGC	3 cut(s)	109, 226, 283
BstDSI	CCRYGG	1 cut(s)	276
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	217
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	116, 326
BstV2I	GAAGAC	1 cut(s)	378
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	3 cut(s)	109, 226, 283
Cfr13I	GGNCC	2 cut(s)	133, 215
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	3 cut(s)	29, 277, 311
CviJI	RGCY	5 cut(s)	107, 184, 228, 281, 317
CviKI_1	RGCY	5 cut(s)	107, 184, 228, 281, 317
CviQI	GTAC	1 cut(s)	268
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	133, 215
Eco88I	CYCGRG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	32, 280, 314
FatI	CATG	3 cut(s)	28, 276, 310
Fnu4HI	GCNGC	2 cut(s)	105, 315
Fsp4HI	GCNGC	2 cut(s)	105, 315
GluI	GCNGC	2 cut(s)	105, 315
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	3 cut(s)	32, 280, 314
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	215, 347
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	2 cut(s)	215, 347
HpyCH4III	ACNGT	2 cut(s)	272, 289
HpyCH4V	TGCA	9 cut(s)	86, 111, 116, 151, 285, 314, 347, 360, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
Hsp92II	CATG	3 cut(s)	32, 280, 314
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	4 cut(s)	116, 121, 231, 295
Lsp1109I	GCAGC	2 cut(s)	116, 326
LweI	GCATC	2 cut(s)	73, 369
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	2 cut(s)	72, 202
MnlI	CCTC	2 cut(s)	255, 286
Mph1103I	ATGCAT	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	1 cut(s)	146
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	219
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	3 cut(s)	32, 280, 314
NsiI	ATGCAT	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	106, 316
PspPI	GGNCC	2 cut(s)	133, 215
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	2 cut(s)	105, 315
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	2 cut(s)	133, 215
ScrFI	CCNGG	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	4 cut(s)	186, 199, 230, 297
SfaNI	GCATC	2 cut(s)	73, 369
SinI	GGWCC	2 cut(s)	133, 215
SmiMI	CAYNNNNRTG	1 cut(s)	195
Sse9I	AATT	2 cut(s)	72, 202
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	272, 289
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	72, 202
TatI	WGTACW	1 cut(s)	267
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	292
TseI	GCWGC	2 cut(s)	104, 314
TspDTI	ATGAA	3 cut(s)	243, 299, 318
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	292
VneI	GTGCAC	1 cut(s)	345
VpaK11BI	GGWCC	2 cut(s)	133, 215
XapI	RAATTY	1 cut(s)	202
XmnI	GAANNNNTTC	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.