Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000993

Physical Location & Seq

Genomic Coordinates Reverse (-)

60195642 .. 60201408

Gene Structure 5767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG328100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAACAAGACATTGTTCGAGCTTTCCTCAAAGACAGAAACCTTAAGGAGTTGAGATCTCAAGAATATGAGGTGATGTTGGTGACATCAGGAGCTGTGGCCCTTGGTCATCAAGTGCTGAGAGACAGGATATCAGTTCACAACAGTAGCTCTCCTGATCTCCAAAAGCCAGCTGAACTGGATGGGAAGGCATGTGCAGCTGTTGGACAGCCTGATCTGGTGGCTCTCTTTAAGACCGTGTTTAGTGAGGAAGATGTGACAGAAGCTCAGTGTCTTGTCACAGAAAGTGACTTTAGGGGTAAAGATTTTCAAAGGCAGCTGAAAGAAACGGTCGATCACTTGCTGTCTTTAAAGACTATACCTATATTCAATGAAAATGATGCAGTTAATACCAGAACAGATCCATATGAGATTATTTCAGAAACCATCCCAGACAGTGTTGGTCAGAAGCTAATTGGACTTGTGACTTCTAGAGATGAGATTCCAGATCTGCTAAAGCTTGACGACAACCTGATCAATCTTGTGATCCCAAGAGGCAGCAACAAGCTGGTGTCTCAAATAAAGAGTTTGACCAAGATTCCAGTCCTGGGGCATGCTGATGGAGTATGCCATGTGTTTATTGACAAGTCCGCTAATATGGATATGGCAAAGCAAATTGTTTTAGATGCAAAAATAGATTATCCAGCAGCCTGCAATGCAATGGAAACACTTCTGGTCTATAAGGATTTAATGCATACAGCAGAGTTCAATGATCTCATTGTTCAGCTTCGCCAAAAAGGTGTGACTTTGTTTGGTGGACCGAGGGCAAGCTCCTTGCTCAATATTCCTCGGGCAGATTCATTACATATTGAGTACAGTTACATAGCCTGCACTGTTGAGGTTGTCGATGAAGTTCATGCAGCCATTGAGCATATAAATAAAAACGGAAGTGCACATACTGATTGCATCATTGCAGAAGACCAAGAAGTTGTGGAAACTTTTTTAGGTCAAGTTGACAGTGCTGCCGTTTCTCACAATGCAAGCACAAGATTTAGCGATGGTGCTCGATTTGGACTTGGGGCAGAGGTCGGCATAAGCACCAGTCGAATTCATGCTCGGGGAAATGGTATGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004350 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006560 GO:0006561 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009555 GO:0009628 GO:0009651 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010035 GO:0010154 GO:0016020 GO:0016053 GO:0016491 GO:0016620 GO:0016903 GO:0017084 GO:0018130 GO:0019752 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0042221 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0055044 GO:0055114 GO:0061458 GO:0071704 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01230 map00330 map01100 map01110 map01230

Pfam Domains

Protein Families

AA_kinase Aldedh

Protein Analysis

371

Amino Acids

40.7

Weight (kDa)

5.13

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AA_kinase	PF00696	14 - 134	6.7e-09	Amino acid kinase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000993)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39800 AT2G39800 AT2G39800 AT2G39800 AT3G55610 AT3G55610
fragaria_vesca	FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_6g12980 FvH4_7g23420 FvH4_7g23420 FvH4_7g23420 FvH4_7g23430
malus_domestica	MD00G1141100.v1.1 MD01G1140200.v1.1 MD04G1136200.v1.1 MD07G1204500.v1.1 MD12G1150700.v1.1
prunus_persica	Prupe.2G240800_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1 Prupe.6G262300_v2.0.a1
pyrus_communis	pycom01g16070 pycom04g12400 pycom07g19110 pycom12g14450
rosa_chinensis	RchiOBHm_Chr1g0368541 RchiOBHm_Chr1g0368561 RchiOBHm_Chr3g0465091
rosa_laevigata	RLG00000024656 RLG00000027203 RLG00000027204
rosa_multiflora	Rmu_co8458369.1_g000001 Rmu_co8474891.1_g000001 Rmu_sc0003386.1_g000013 Rmu_sc0011394.1_g000007
rosa_roxburghii	Rroxscaffold_4G00288440 Rroxscaffold_4G00288450 Rroxscaffold_6G00415250
rosa_rugosa	Rorug01G0342800 Rorug01G0342900 Rorug03G0075300 Rorug03G0075400
rosa_samantha	Rh1AG350100 Rh1AG350200 Rh1BG313300 Rh1BG313400 Rh1CG328000 Rh1CG328100 Rh1DG344700 Rh1DG344800 Rh3BG139000 Rh3CG141100 Rh3CG149400 Rh3DG140200
rosa_wichuraiana	Rw3G011370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	630
AclWI	GGATC	2 cut(s)	395, 520
AcsI	RAATTY	1 cut(s)	1086
AfaI	GTAC	1 cut(s)	854
AfiI	CCNNNNNNNGG	1 cut(s)	587
AflII	CTTAAG	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	311, 370, 748
AjnI	CCWGG	1 cut(s)	585
Alw21I	GWGCWC	2 cut(s)	934, 1045
Alw26I	GTCTC	2 cut(s)	117, 558
Alw44I	GTGCAC	1 cut(s)	930
AlwI	GGATC	2 cut(s)	395, 520
AlwNI	CAGNNNCTG	1 cut(s)	95
Ama87I	CYCGRG	2 cut(s)	828, 1095
AoxI	GGCC	1 cut(s)	99
ApaLI	GTGCAC	1 cut(s)	930
ApeKI	GCWGC	6 cut(s)	197, 316, 537, 686, 899, 1001
ApoI	RAATTY	1 cut(s)	1086
Asp700I	GAANNNNTTC	1 cut(s)	708
AspS9I	GGNCC	2 cut(s)	100, 797
AsuHPI	GGTGA	2 cut(s)	85, 94
AvaI	CYCGRG	2 cut(s)	828, 1095
AvaII	GGWCC	1 cut(s)	797
BaeGI	GKGCMC	1 cut(s)	934
BarI	GAAGNNNNNNTAC	2 cut(s)	919, 951
BbsI	GAAGAC	1 cut(s)	963
Bbv12I	GWGCWC	2 cut(s)	934, 1045
BbvI	GCAGC	6 cut(s)	209, 328, 549, 698, 911, 988
BccI	CCATC	4 cut(s)	176, 434, 593, 1031
BceAI	ACGGC	1 cut(s)	989
BciT130I	CCWGG	1 cut(s)	587
BclI	TGATCA	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	117, 558
BfaI	CTAG	1 cut(s)	471
BfrI	CTTAAG	1 cut(s)	44
BglII	AGATCT	2 cut(s)	56, 487
BisI	GCNGC	6 cut(s)	198, 317, 538, 687, 900, 1002
BlsI	GCNGC	6 cut(s)	199, 318, 539, 688, 901, 1003
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	1 cut(s)	797
BmeT110I	CYCGRG	2 cut(s)	828, 1095
BmgT120I	GGNCC	2 cut(s)	100, 797
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	3 cut(s)	370, 655, 954
BpiI	GAAGAC	1 cut(s)	963
BplI	GAGNNNNNCTC	2 cut(s)	12, 44
BpuEI	CTTGAG	1 cut(s)	45
BsaJI	CCNNGG	4 cut(s)	103, 586, 800, 827
Bsc4I	CCNNNNNNNGG	1 cut(s)	587
Bse1I	ACTGG	3 cut(s)	183, 581, 1080
Bse3DI	GCAATG	3 cut(s)	700, 705, 948
BseBI	CCWGG	1 cut(s)	587
BseDI	CCNNGG	4 cut(s)	103, 586, 800, 827
BseGI	GGATG	2 cut(s)	187, 426
BseLI	CCNNNNNNNGG	1 cut(s)	587
BseMI	GCAATG	3 cut(s)	700, 705, 948
BseMII	CTCAG	2 cut(s)	110, 281
BseNI	ACTGG	3 cut(s)	183, 581, 1080
BseSI	GKGCMC	1 cut(s)	934
BseXI	GCAGC	6 cut(s)	209, 328, 549, 698, 911, 988
BsgI	GTGCAG	2 cut(s)	216, 853
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	2 cut(s)	934, 1045
BsiHKCI	CYCGRG	2 cut(s)	828, 1095
BslI	CCNNNNNNNGG	1 cut(s)	587
BsmAI	GTCTC	2 cut(s)	117, 558
BsnI	GGCC	1 cut(s)	101
BsoBI	CYCGRG	2 cut(s)	828, 1095
Bsp1286I	GDGCHC	2 cut(s)	934, 1045
Bsp143I	GATC	9 cut(s)	56, 157, 214, 334, 400, 487, 513, 525, 751
BspACI	CCGC	1 cut(s)	630
BspANI	GGCC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	111, 280
BspPI	GGATC	2 cut(s)	395, 520
BspTI	CTTAAG	1 cut(s)	44
BsrDI	GCAATG	3 cut(s)	700, 705, 948
BsrI	ACTGG	3 cut(s)	183, 581, 1080
BssECI	CCNNGG	4 cut(s)	103, 586, 800, 827
BssMI	GATC	9 cut(s)	56, 157, 214, 334, 400, 487, 513, 525, 751
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	587
Bst4CI	ACNGT	7 cut(s)	146, 238, 331, 437, 857, 874, 998
BstAFI	CTTAAG	1 cut(s)	44
BstC8I	GCNNGC	6 cut(s)	171, 594, 691, 808, 868, 1021
BstDEI	CTNAG	2 cut(s)	119, 267
BstF5I	GGATG	2 cut(s)	187, 426
BstKTI	GATC	9 cut(s)	59, 160, 217, 337, 403, 490, 516, 528, 754
BstMAI	GTCTC	2 cut(s)	117, 558
BstMBI	GATC	9 cut(s)	56, 157, 214, 334, 400, 487, 513, 525, 751
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 695
BstNI	CCWGG	1 cut(s)	587
BstNSI	RCATGY	2 cut(s)	195, 596
BstSCI	CCNGG	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	934
BstV1I	GCAGC	6 cut(s)	209, 328, 549, 698, 911, 988
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	3 cut(s)	56, 400, 487
BstYI	RGATCY	3 cut(s)	56, 400, 487
BsuRI	GGCC	1 cut(s)	101
BtgZI	GCGATG	1 cut(s)	1050
BtsCI	GGATG	2 cut(s)	187, 426
BtsIMutI	CAGTG	4 cut(s)	275, 442, 870, 1003
Cac8I	GCNNGC	6 cut(s)	171, 594, 691, 808, 868, 1021
CaiI	CAGNNNCTG	1 cut(s)	95
Cfr13I	GGNCC	2 cut(s)	100, 797
Csp6I	GTAC	1 cut(s)	853
CviAII	CATG	5 cut(s)	192, 593, 611, 896, 1091
CviQI	GTAC	1 cut(s)	853
DdeI	CTNAG	2 cut(s)	119, 267
DpnI	GATC	9 cut(s)	58, 159, 216, 336, 402, 489, 515, 527, 753
DpnII	GATC	9 cut(s)	56, 157, 214, 334, 400, 487, 513, 525, 751
DraI	TTTAAA	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	103
Eco32I	GATATC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	797
Eco88I	CYCGRG	2 cut(s)	828, 1095
EcoRI	GAATTC	1 cut(s)	1086
EcoRII	CCWGG	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	735
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	5 cut(s)	195, 596, 614, 899, 1094
FatI	CATG	5 cut(s)	191, 592, 610, 895, 1090
FauNDI	CATATG	1 cut(s)	406
FbaI	TGATCA	1 cut(s)	513
Fnu4HI	GCNGC	6 cut(s)	198, 317, 538, 687, 900, 1002
FokI	GGATG	2 cut(s)	194, 413
Fsp4HI	GCNGC	6 cut(s)	198, 317, 538, 687, 900, 1002
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	6 cut(s)	198, 317, 538, 687, 900, 1002
HaeIII	GGCC	1 cut(s)	101
Hin1II	CATG	5 cut(s)	195, 596, 614, 899, 1094
HincII	GTYRAC	1 cut(s)	994
HindII	GTYRAC	1 cut(s)	994
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	3 cut(s)	481, 577, 836
HphI	GGTGA	2 cut(s)	85, 94
Hpy166II	GTNNAC	4 cut(s)	139, 797, 932, 994
Hpy188I	TCNGA	2 cut(s)	421, 447
Hpy188III	TCNNGA	5 cut(s)	62, 90, 155, 471, 485
Hpy8I	GTNNAC	4 cut(s)	139, 797, 932, 994
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	7 cut(s)	146, 238, 331, 437, 857, 874, 998
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 695
HpyF3I	CTNAG	2 cut(s)	119, 267
Hsp92II	CATG	5 cut(s)	195, 596, 614, 899, 1094
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	9 cut(s)	56, 157, 214, 334, 400, 487, 513, 525, 751
LmnI	GCTCC	2 cut(s)	92, 815
Lsp1109I	GCAGC	6 cut(s)	209, 328, 549, 698, 911, 988
LweI	GCATC	3 cut(s)	370, 655, 954
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	7 cut(s)	82, 256, 277, 287, 463, 781, 857
MalI	GATC	9 cut(s)	58, 159, 216, 336, 402, 489, 515, 527, 753
MboI	GATC	9 cut(s)	56, 157, 214, 334, 400, 487, 513, 525, 751
MboII	GAAGA	2 cut(s)	263, 968
MflI	RGATCY	3 cut(s)	56, 400, 487
MhlI	GDGCHC	2 cut(s)	934, 1045
MluCI	AATT	3 cut(s)	453, 654, 1086
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	8 cut(s)	38, 64, 241, 527, 795, 837, 871, 1057
Mph1103I	ATGCAT	1 cut(s)	735
MroXI	GAANNNNTTC	1 cut(s)	708
MseI	TTAA	5 cut(s)	45, 231, 350, 387, 728
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	3 cut(s)	173, 200, 319
MspCI	CTTAAG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	587
MvaI	CCWGG	1 cut(s)	587
MwoI	GCNNNNNNNGC	2 cut(s)	197, 695
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	9 cut(s)	56, 157, 214, 334, 400, 487, 513, 525, 751
NlaIII	CATG	5 cut(s)	195, 596, 614, 899, 1094
NmuCI	GTSAC	6 cut(s)	82, 256, 277, 287, 463, 781
NsiI	ATGCAT	1 cut(s)	735
NspI	RCATGY	2 cut(s)	195, 596
PaeI	GCATGC	1 cut(s)	596
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	3 cut(s)	481, 577, 836
PkrI	GCNGC	6 cut(s)	199, 318, 539, 688, 901, 1003
Psp6I	CCWGG	1 cut(s)	585
PspGI	CCWGG	1 cut(s)	585
PspPI	GGNCC	2 cut(s)	100, 797
PstNI	CAGNNNCTG	1 cut(s)	95
PsuI	RGATCY	3 cut(s)	56, 400, 487
PvuII	CAGCTG	3 cut(s)	173, 200, 319
RsaI	GTAC	1 cut(s)	854
RsaNI	GTAC	1 cut(s)	853
RseI	CAYNNNNRTG	1 cut(s)	597
SaqAI	TTAA	5 cut(s)	45, 231, 350, 387, 728
SatI	GCNGC	6 cut(s)	198, 317, 538, 687, 900, 1002
Sau3AI	GATC	9 cut(s)	56, 157, 214, 334, 400, 487, 513, 525, 751
Sau96I	GGNCC	2 cut(s)	100, 797
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	2 cut(s)	934, 1045
SfaNI	GCATC	3 cut(s)	370, 655, 954
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	1 cut(s)	597
SmlI	CTYRAG	2 cut(s)	44, 60
SmoI	CTYRAG	2 cut(s)	44, 60
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	3 cut(s)	453, 654, 1086
SsiI	CCGC	1 cut(s)	630
SspI	AATATT	1 cut(s)	823
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	7 cut(s)	146, 238, 331, 437, 857, 874, 998
TaqI	TCGA	5 cut(s)	19, 333, 885, 1045, 1084
TaqII	GACCGA	1 cut(s)	814
TasI	AATT	3 cut(s)	453, 654, 1086
TatI	WGTACW	1 cut(s)	852
TfiI	GAWTC	3 cut(s)	481, 577, 836
Tru1I	TTAA	5 cut(s)	45, 231, 350, 387, 728
Tru9I	TTAA	5 cut(s)	45, 231, 350, 387, 728
TscAI	CASTG	4 cut(s)	275, 442, 877, 1003
TseFI	GTSAC	6 cut(s)	82, 256, 277, 287, 463, 781
TseI	GCWGC	6 cut(s)	197, 316, 537, 686, 899, 1001
Tsp45I	GTSAC	6 cut(s)	82, 256, 277, 287, 463, 781
TspDTI	ATGAA	5 cut(s)	387, 828, 884, 903, 1079
TspGWI	ACGGA	1 cut(s)	939
TspRI	CASTG	4 cut(s)	275, 442, 877, 1003
Vha464I	CTTAAG	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	930
VpaK11BI	GGWCC	1 cut(s)	797
XapI	RAATTY	1 cut(s)	1086
XbaI	TCTAGA	1 cut(s)	470
XceI	RCATGY	2 cut(s)	195, 596
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.