FvH4_7g27132

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
20335758 .. 20339138
3381 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g27132.t3

Sequence Viewer

Length: 1089 bp
ATGGTGGGTGCAGTCCGCCGGTCCAGAAGAAGACTGGTTGGTTATACAGGGAAACCAACATTGATATCTACCTTAACGGTACTAGTATGCAGAAACCAAATCACAGTAACAATGGTGAAAGCTATTCGTATCCATCAACTTGGTGGACCTGAGGTTTTGAAATGGGAAGATGTCGAAATAGGAGAGCCAAAGGAGGGTGAGATTCGTGTGAAGAACAAGGCCATTGGGATTAATTTCATTGATGTATACTTCCGCAAAGGGCTATATTACAAGGCTGATACAATGCCCTTCATCCCAGGTATGGAGGCTTGTGGAGTTGTGACAGCGATTGGACCTGGACTAACAGGCAGGCAAGTTGGAGATCTTGTCGCCTATATTGGTACTCCAATGGGCTCATACGCAGAAGAGCAGATCCTTCCTGCAAACAAAGTTGTGCCTGTTCCTCCTTCCATTGATCCTATTGTGGCAGCATCCGTCATACTTAAGGGTATGACAGCTCAGGTTCTACTGCGCCAATGTTTCAAGGTTGAACCTGGACACAGAGTCCTTGTTCATGCAGCAGCTGGTGGAGTCGGATCCCTTTTATGCCAATGGGCTAATGCCCTCGGTGCCATTGTCATTGGAACTGTATCGACTAAAGAGAAGGCAGTTCAAGCCAAGGAAGATGGCTGTCACCATGTCATAATCTACAAGGAAGAGGACTTCATTGCTCGTGTGACTGAAATAACATCCGATAATGGAGTTGATGTTGTCTACGACTCTGTAGGCAAGGACACCTTTCAGGGATCATTGGCATGCTTGAAGACTCGAGGATACATGGTGAGTTTCGGGCAGGCATCAGGTAGGCCTGACCCTGTTCCATTGTCAGCTCTTGCAGCAAAGTCACTCTTCTTGACAAGGCCTGCCCTTTTCCAATACACTGCAACTCGAGACAAATTGTTAGTGGCTGCAGGAGAGGTGTTTGCTAATGTTGCATCAGGTGTGTTGCACGTTCGAGTAAATCATAAGTACCCATTGTCACATGCACCAGAGGCACATGCAGACCTTGAGAACAGGAGAACATCTGGTTCGGCTGTTCTTATTCCTTAA

Protein Analysis

363

Amino Acids

38.88

Weight (kDa)

9.12

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 65 - 148 3.6e-15 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 182 - 288 3.9e-24 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 215 - 352 9.7e-20 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 608
AccI GTMKAC 2 cut(s) 246, 753
AciI CCGC 2 cut(s) 16, 253
AclWI GGATC 5 cut(s) 406, 449, 570, 583, 793
AfaI GTAC 3 cut(s) 81, 382, 1010
AfiI CCNNNNNNNGG 2 cut(s) 194, 301
AflII CTTAAG 1 cut(s) 482
AgsI TTSAA 5 cut(s) 160, 523, 530, 653, 802
AhdI GACNNNNNGTC 1 cut(s) 542
AhlI ACTAGT 1 cut(s) 82
AjnI CCWGG 3 cut(s) 295, 334, 532
AluBI AGCT 4 cut(s) 122, 497, 563, 869
AluI AGCT 4 cut(s) 122, 497, 563, 869
Alw26I GTCTC 1 cut(s) 924
AlwI GGATC 5 cut(s) 406, 449, 570, 583, 793
AlwNI CAGNNNCTG 1 cut(s) 563
Ama87I CYCGRG 2 cut(s) 807, 927
AoxI GGCC 3 cut(s) 219, 845, 899
ApeKI GCWGC 5 cut(s) 467, 557, 560, 875, 947
AseI ATTAAT 1 cut(s) 231
AspLEI GCGC 1 cut(s) 513
AspS9I GGNCC 3 cut(s) 21, 146, 332
AsuHPI GGTGA 4 cut(s) 127, 209, 665, 832
AvaI CYCGRG 2 cut(s) 807, 927
AvaII GGWCC 3 cut(s) 21, 146, 332
AxyI CCTNAGG 1 cut(s) 150
BamHI GGATCC 1 cut(s) 575
BanI GGYRCC 1 cut(s) 608
BanII GRGCYC 1 cut(s) 395
BauI CACGAG 1 cut(s) 711
BbsI GAAGAC 2 cut(s) 37, 809
BbvI GCAGC 5 cut(s) 479, 569, 572, 887, 934
BccI CCATC 2 cut(s) 141, 659
BciT130I CCWGG 3 cut(s) 297, 336, 534
BciVI GTATCC 2 cut(s) 140, 806
BcoDI GTCTC 1 cut(s) 924
BcuI ACTAGT 1 cut(s) 82
BfaI CTAG 1 cut(s) 83
BfmI CTRYAG 2 cut(s) 762, 948
BfrI CTTAAG 1 cut(s) 482
BfuI GTATCC 2 cut(s) 140, 806
BglII AGATCT 1 cut(s) 361
BisI GCNGC 5 cut(s) 468, 558, 561, 876, 948
BlsI GCNGC 5 cut(s) 469, 559, 562, 877, 949
Bme1390I CCNGG 3 cut(s) 297, 336, 534
Bme18I GGWCC 3 cut(s) 21, 146, 332
BmeRI GACNNNNNGTC 1 cut(s) 542
BmeT110I CYCGRG 2 cut(s) 807, 927
BmgT120I GGNCC 3 cut(s) 21, 146, 332
BmiI GGNNCC 2 cut(s) 577, 610
BmrFI CCNGG 3 cut(s) 297, 336, 534
BmsI GCATC 3 cut(s) 479, 845, 983
BpiI GAAGAC 2 cut(s) 37, 809
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 1067
BsaJI CCNNGG 3 cut(s) 295, 604, 657
BsaXI ACNNNNNCTCC 4 cut(s) 351, 381, 732, 762
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 301
Bse118I RCCGGY 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 39
Bse21I CCTNAGG 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 705
BseBI CCWGG 3 cut(s) 297, 336, 534
BseDI CCNNGG 3 cut(s) 295, 604, 657
BseGI GGATG 3 cut(s) 291, 470, 728
BseLI CCNNNNNNNGG 2 cut(s) 194, 301
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 2 cut(s) 141, 512
BseNI ACTGG 1 cut(s) 39
BseXI GCAGC 5 cut(s) 479, 569, 572, 887, 934
BsgI GTGCAG 1 cut(s) 30
BshFI GGCC 3 cut(s) 221, 847, 901
BshNI GGYRCC 1 cut(s) 608
BsiHKCI CYCGRG 2 cut(s) 807, 927
BsiSI CCGG 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 194, 301
BsmAI GTCTC 1 cut(s) 924
BsnI GGCC 3 cut(s) 221, 847, 901
BsoBI CYCGRG 2 cut(s) 807, 927
Bsp1286I GDGCHC 1 cut(s) 395
Bsp143I GATC 5 cut(s) 361, 411, 454, 575, 785
BspACI CCGC 2 cut(s) 16, 253
BspANI GGCC 3 cut(s) 221, 847, 901
BspCNI CTCAG 2 cut(s) 142, 511
BspLI GGNNCC 2 cut(s) 577, 610
BspMAI CTGCAG 1 cut(s) 952
BspPI GGATC 5 cut(s) 406, 449, 570, 583, 793
BspQI GCTCTTC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 608
BspTI CTTAAG 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 705
BsrFI RCCGGY 1 cut(s) 18
BsrI ACTGG 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 18
BssECI CCNNGG 3 cut(s) 295, 604, 657
BssMI GATC 5 cut(s) 361, 411, 454, 575, 785
BssNAI GTATAC 1 cut(s) 247
BssSI CACGAG 1 cut(s) 711
BssT1I CCWWGG 1 cut(s) 657
Bst1107I GTATAC 1 cut(s) 247
Bst2BI CACGAG 1 cut(s) 711
Bst2UI CCWGG 3 cut(s) 297, 336, 534
Bst4CI ACNGT 3 cut(s) 79, 106, 628
Bst6I CTCTTC 3 cut(s) 399, 690, 893
BstAFI CTTAAG 1 cut(s) 482
BstC8I GCNNGC 4 cut(s) 350, 796, 834, 903
BstDEI CTNAG 2 cut(s) 150, 498
BstF5I GGATG 3 cut(s) 291, 470, 728
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 5 cut(s) 364, 414, 457, 578, 788
BstMAI GTCTC 1 cut(s) 924
BstMBI GATC 5 cut(s) 361, 411, 454, 575, 785
BstMWI GCNNNNNNNGC 5 cut(s) 608, 653, 875, 971, 1031
BstNI CCWGG 3 cut(s) 297, 336, 534
BstNSI RCATGY 3 cut(s) 798, 1025, 1040
BstSCI CCNGG 3 cut(s) 295, 334, 532
BstSFI CTRYAG 2 cut(s) 762, 948
BstV1I GCAGC 5 cut(s) 479, 569, 572, 887, 934
BstV2I GAAGAC 2 cut(s) 37, 809
BstX2I RGATCY 3 cut(s) 361, 411, 575
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 3 cut(s) 361, 411, 575
BstZ17I GTATAC 1 cut(s) 247
Bsu36I CCTNAGG 1 cut(s) 150
BsuI GTATCC 2 cut(s) 140, 806
BsuRI GGCC 3 cut(s) 221, 847, 901
BtsCI GGATG 3 cut(s) 291, 470, 728
BtsI GCAGTG 1 cut(s) 918
BtsIMutI CAGTG 1 cut(s) 918
Cac8I GCNNGC 4 cut(s) 350, 796, 834, 903
CaiI CAGNNNCTG 1 cut(s) 563
CfoI GCGC 1 cut(s) 513
Cfr10I RCCGGY 1 cut(s) 18
Cfr13I GGNCC 3 cut(s) 21, 146, 332
Csp6I GTAC 3 cut(s) 80, 381, 1009
CviAII CATG 6 cut(s) 554, 677, 795, 817, 1022, 1037
CviQI GTAC 3 cut(s) 80, 381, 1009
DdeI CTNAG 2 cut(s) 150, 498
DpnI GATC 5 cut(s) 363, 413, 456, 577, 787
DpnII GATC 5 cut(s) 361, 411, 454, 575, 785
DriI GACNNNNNGTC 1 cut(s) 542
Eam1104I CTCTTC 3 cut(s) 399, 690, 893
Eam1105I GACNNNNNGTC 1 cut(s) 542
EarI CTCTTC 3 cut(s) 399, 690, 893
EciI GGCGGA 1 cut(s) 5
Eco130I CCWWGG 1 cut(s) 657
Eco147I AGGCCT 2 cut(s) 847, 901
Eco24I GRGCYC 1 cut(s) 395
Eco32I GATATC 1 cut(s) 66
Eco47I GGWCC 3 cut(s) 21, 146, 332
Eco81I CCTNAGG 1 cut(s) 150
Eco88I CYCGRG 2 cut(s) 807, 927
EcoRII CCWGG 3 cut(s) 295, 334, 532
EcoRV GATATC 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 6 cut(s) 557, 680, 798, 820, 1025, 1040
FalI AAGNNNNNCTT 4 cut(s) 761, 793, 872, 904
FatI CATG 6 cut(s) 553, 676, 794, 816, 1021, 1036
FblI GTMKAC 2 cut(s) 246, 753
Fnu4HI GCNGC 5 cut(s) 468, 558, 561, 876, 948
FokI GGATG 3 cut(s) 278, 457, 715
FriOI GRGCYC 1 cut(s) 395
Fsp4HI GCNGC 5 cut(s) 468, 558, 561, 876, 948
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 512
GluI GCNGC 5 cut(s) 468, 558, 561, 876, 948
HaeIII GGCC 3 cut(s) 221, 847, 901
HapII CCGG 1 cut(s) 19
HhaI GCGC 1 cut(s) 513
Hin1II CATG 6 cut(s) 557, 680, 798, 820, 1025, 1040
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HinfI GANTC 5 cut(s) 202, 543, 570, 758, 805
HpaII CCGG 1 cut(s) 19
HphI GGTGA 4 cut(s) 127, 209, 665, 832
Hpy166II GTNNAC 3 cut(s) 146, 247, 754
Hpy188I TCNGA 2 cut(s) 575, 733
Hpy188III TCNNGA 3 cut(s) 24, 892, 929
Hpy8I GTNNAC 3 cut(s) 146, 247, 754
HpyAV CCTTC 4 cut(s) 298, 425, 456, 637
HpyCH4III ACNGT 3 cut(s) 79, 106, 628
HpyCH4IV ACGT 1 cut(s) 990
HpyF10VI GCNNNNNNNGC 5 cut(s) 608, 653, 875, 971, 1031
HpyF3I CTNAG 2 cut(s) 150, 498
HpySE526I ACGT 1 cut(s) 990
Hsp92II CATG 6 cut(s) 557, 680, 798, 820, 1025, 1040
HspAI GCGC 1 cut(s) 511
Kzo9I GATC 5 cut(s) 361, 411, 454, 575, 785
LguI GCTCTTC 1 cut(s) 399
Lsp1109I GCAGC 5 cut(s) 479, 569, 572, 887, 934
LweI GCATC 3 cut(s) 479, 845, 983
MaeI CTAG 1 cut(s) 83
MaeII ACGT 1 cut(s) 990
MaeIII GTNAC 6 cut(s) 106, 319, 671, 715, 882, 1017
MalI GATC 5 cut(s) 363, 413, 456, 577, 787
MboI GATC 5 cut(s) 361, 411, 454, 575, 785
MboII GAAGA 9 cut(s) 39, 42, 179, 223, 416, 674, 707, 814, 880
MflI RGATCY 3 cut(s) 361, 411, 575
MhlI GDGCHC 1 cut(s) 395
MluCI AATT 2 cut(s) 232, 935
MlyI GAGTC 4 cut(s) 552, 579, 752, 799
MmeI TCCRAC 2 cut(s) 337, 553
MnlI CCTC 9 cut(s) 145, 187, 298, 453, 614, 691, 803, 949, 1024
MseI TTAA 4 cut(s) 74, 231, 483, 1087
MslI CAYNNNNRTG 1 cut(s) 793
MspA1I CMGCKG 1 cut(s) 563
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 1 cut(s) 19
MspR9I CCNGG 3 cut(s) 297, 336, 534
MvaI CCWGG 3 cut(s) 297, 336, 534
MwoI GCNNNNNNNGC 5 cut(s) 608, 653, 875, 971, 1031
NdeII GATC 5 cut(s) 361, 411, 454, 575, 785
NlaIII CATG 6 cut(s) 557, 680, 798, 820, 1025, 1040
NlaIV GGNNCC 2 cut(s) 577, 610
NmuCI GTSAC 5 cut(s) 319, 671, 715, 882, 1017
NspI RCATGY 3 cut(s) 798, 1025, 1040
PaeI GCATGC 1 cut(s) 798
PaeR7I CTCGAG 2 cut(s) 807, 927
PceI AGGCCT 2 cut(s) 847, 901
PciSI GCTCTTC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 202
PkrI GCNGC 5 cut(s) 469, 559, 562, 877, 949
PleI GAGTC 4 cut(s) 551, 578, 752, 799
PpsI GAGTC 4 cut(s) 551, 578, 752, 799
PshBI ATTAAT 1 cut(s) 231
Psp6I CCWGG 3 cut(s) 295, 334, 532
PspGI CCWGG 3 cut(s) 295, 334, 532
PspN4I GGNNCC 2 cut(s) 577, 610
PspPI GGNCC 3 cut(s) 21, 146, 332
PspXI VCTCGAGB 1 cut(s) 807
PstI CTGCAG 1 cut(s) 952
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 3 cut(s) 361, 411, 575
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 3 cut(s) 81, 382, 1010
RsaNI GTAC 3 cut(s) 80, 381, 1009
RseI CAYNNNNRTG 1 cut(s) 793
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 4 cut(s) 74, 231, 483, 1087
SatI GCNGC 5 cut(s) 468, 558, 561, 876, 948
Sau3AI GATC 5 cut(s) 361, 411, 454, 575, 785
Sau96I GGNCC 3 cut(s) 21, 146, 332
SchI GAGTC 4 cut(s) 552, 579, 752, 799
ScrFI CCNGG 3 cut(s) 297, 336, 534
SduI GDGCHC 1 cut(s) 395
SfaNI GCATC 3 cut(s) 479, 845, 983
SfcI CTRYAG 2 cut(s) 762, 948
Sfr274I CTCGAG 2 cut(s) 807, 927
SinI GGWCC 3 cut(s) 21, 146, 332
SlaI CTCGAG 2 cut(s) 807, 927
SmiMI CAYNNNNRTG 1 cut(s) 793
SmlI CTYRAG 4 cut(s) 482, 807, 927, 1046
SmoI CTYRAG 4 cut(s) 482, 807, 927, 1046
SpeI ACTAGT 1 cut(s) 82
SphI GCATGC 1 cut(s) 798
Sse9I AATT 2 cut(s) 232, 935
SseBI AGGCCT 2 cut(s) 847, 901
SsiI CCGC 2 cut(s) 16, 253
SspMI CTAG 1 cut(s) 83
StuI AGGCCT 2 cut(s) 847, 901
StyD4I CCNGG 3 cut(s) 295, 334, 532
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 3 cut(s) 79, 106, 628
TaiI ACGT 1 cut(s) 993
TaqI TCGA 5 cut(s) 174, 632, 808, 928, 994
TasI AATT 2 cut(s) 232, 935
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 4 cut(s) 74, 231, 483, 1087
Tru9I TTAA 4 cut(s) 74, 231, 483, 1087
TscAI CASTG 1 cut(s) 925
TseFI GTSAC 5 cut(s) 319, 671, 715, 882, 1017
TseI GCWGC 5 cut(s) 467, 557, 560, 875, 947
Tsp45I GTSAC 5 cut(s) 319, 671, 715, 882, 1017
TspDTI ATGAA 4 cut(s) 226, 280, 542, 694
TspGWI ACGGA 1 cut(s) 463
TspRI CASTG 1 cut(s) 925
Vha464I CTTAAG 1 cut(s) 482
VpaK11BI GGWCC 3 cut(s) 21, 146, 332
VspI ATTAAT 1 cut(s) 231
XceI RCATGY 3 cut(s) 798, 1025, 1040
XcmI CCANNNNNNNNNTGG 2 cut(s) 31, 140
XhoI CTCGAG 2 cut(s) 807, 927
XmiI GTMKAC 2 cut(s) 246, 753
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.