RLG00000027560

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
12725441 .. 12728216
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027560

Sequence Viewer

Length: 1131 bp
ATGGGTTCACTTGGAACAAGTTTCCAGTTGGTTCCACAAGTTTACACTGTTTCAATTTTCATCAAAACTAGGGTCAACTCTTCACTCAGAACCCAGAAATCACTAGTTAGAGCTCTTGCAACTCAAGCATCATCATCATCATCATCATCAGCTAAGATGGTCAAAGGCATTAGAGTCCATGAACATGGTGGACCTGAGGTCTTGAAATGGGAAGATGTGGAAGTAGGAGAGCCCAAGGAGGGCGAGGTTCGTGTGAAGAACAAGGCCATTGGGCTTAATTTCATCGATGTGTACTACCGCAAAGGGGTTTATAAGACTCCTTCAATTCCTTACATCCCAGGTGTTGAGGCTTGCGGAGTTGTGACAGCTGTGGGACCTGGACTAACTGGCAGGCAAGTTGGAGATGTTGTAGCCTTCGCTGGTGGTGCAATGGGCTCCTATGTGGAAGAGCAGATCCTTCCTGCTGACAAAGTTGTTCCTGTTCCTCCTTCCATTGAGCCTACTGTTGCTGCATCCCTCTTGCTTAAGGGCATGACAGCTCAGTTTCTACTGCGTCGTTGCTTCAAGGTGGAACCTGGACATACAGTCCTTGTTCATGCAGCAGCTGGTGGAGTTGGATCCCTTTTATGCCAGTGGGCTAATGCCCTTGGTGCCACTGTCATTGGAACTGTATCAACTAAAGAGAAGGCAGCTCAAGCCAAGGAAGATGGCTGTCACCATGTCATAATCAATAAGGAAGAGGACTTTGTTGCTCGTGTGACTGAAATAACCTCTGGCAATGGGGTTGAAGTTGTCTACGATTCTGTTGGGAAGGATACGTTTGAGGGATCATTGATATGCTTGAAGTCTCGTGGATACATGGTGAGTTTTGGGCAGTCATCAGGTGCACCAGATCCGGTTCCATTATCAGCTCTTTCAGTGAAGTCACTGTTCTTGACCAGGCCTTCCCTTTTCCATTACACGGCTACTCGAGATGAATTGTTAGAGACTGCAGGAGAGGTATTTGCTAATGTTGATGCAGGTATATTGCGGGTTCGAGTAAATCACACCTACCCATTGTCTGAAGCAGCACTTGCACATTCAGACCTTGAGAATAGGAAAACATCTGGATCTGTTGTACTCATCCCCTGA

Protein Analysis

377

Amino Acids

39.89

Weight (kDa)

7.67

Isoelectric Point (pI)

31.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 80 - 162 1.1e-14 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 204 - 323 9.9e-25 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 237 - 374 4.6e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
Acc36I ACCTGC 1 cut(s) 1010
AccB1I GGYRCC 1 cut(s) 650
AccI GTMKAC 1 cut(s) 795
AciI CCGC 3 cut(s) 298, 354, 1030
AclWI GGATC 6 cut(s) 448, 612, 625, 835, 887, 1117
AcuI CTGAAG 1 cut(s) 1083
AfaI GTAC 2 cut(s) 293, 1119
AfiI CCNNNNNNNGG 3 cut(s) 239, 304, 961
AflII CTTAAG 1 cut(s) 524
AgsI TTSAA 6 cut(s) 54, 205, 324, 565, 788, 844
AhdI GACNNNNNGTC 2 cut(s) 197, 584
AhlI ACTAGT 1 cut(s) 103
AjnI CCWGG 4 cut(s) 337, 376, 574, 938
AluBI AGCT 7 cut(s) 113, 152, 368, 539, 605, 692, 911
AluI AGCT 7 cut(s) 113, 152, 368, 539, 605, 692, 911
Alw21I GWGCWC 2 cut(s) 115, 889
Alw26I GTCTC 2 cut(s) 852, 980
Alw44I GTGCAC 1 cut(s) 885
AlwI GGATC 6 cut(s) 448, 612, 625, 835, 887, 1117
AlwNI CAGNNNCTG 1 cut(s) 605
Ama87I CYCGRG 1 cut(s) 969
AoxI GGCC 2 cut(s) 264, 941
ApaLI GTGCAC 1 cut(s) 885
ApeKI GCWGC 5 cut(s) 509, 599, 602, 689, 1067
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AspS9I GGNCC 2 cut(s) 191, 374
AsuHPI GGTGA 2 cut(s) 707, 874
AvaI CYCGRG 1 cut(s) 969
AvaII GGWCC 2 cut(s) 191, 374
AxyI CCTNAGG 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 889
BamHI GGATCC 1 cut(s) 617
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 3 cut(s) 115, 234, 437
BauI CACGAG 2 cut(s) 753, 849
Bbv12I GWGCWC 2 cut(s) 115, 889
BbvI GCAGC 5 cut(s) 496, 611, 614, 701, 1079
BccI CCATC 2 cut(s) 151, 701
BceAI ACGGC 1 cut(s) 978
BciT130I CCWGG 4 cut(s) 339, 378, 576, 940
BciVI GTATCC 2 cut(s) 808, 848
BcoDI GTCTC 2 cut(s) 852, 980
BcuI ACTAGT 1 cut(s) 103
BfaI CTAG 2 cut(s) 69, 104
BfmI CTRYAG 1 cut(s) 990
BfrI CTTAAG 1 cut(s) 524
BfuAI ACCTGC 1 cut(s) 1010
BfuI GTATCC 2 cut(s) 808, 848
BisI GCNGC 5 cut(s) 510, 600, 603, 690, 1068
BlsI GCNGC 5 cut(s) 511, 601, 604, 691, 1069
Bme1390I CCNGG 4 cut(s) 339, 378, 576, 940
Bme18I GGWCC 2 cut(s) 191, 374
BmeRI GACNNNNNGTC 2 cut(s) 197, 584
BmeT110I CYCGRG 1 cut(s) 969
BmgT120I GGNCC 2 cut(s) 191, 374
BmiI GGNNCC 7 cut(s) 33, 375, 436, 573, 619, 652, 900
BmrFI CCNGG 4 cut(s) 339, 378, 576, 940
BmsI GCATC 3 cut(s) 137, 521, 1006
BpuEI CTTGAG 3 cut(s) 108, 678, 1109
Bsa29I ATCGAT 1 cut(s) 285
BsaJI CCNNGG 4 cut(s) 234, 337, 646, 699
BsaWI WCCGGW 1 cut(s) 895
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 3 cut(s) 239, 304, 961
Bse1I ACTGG 3 cut(s) 25, 391, 631
Bse21I CCTNAGG 1 cut(s) 195
Bse3DI GCAATG 2 cut(s) 435, 784
BseBI CCWGG 4 cut(s) 339, 378, 576, 940
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 4 cut(s) 234, 337, 646, 699
BseGI GGATG 3 cut(s) 333, 512, 1122
BseLI CCNNNNNNNGG 3 cut(s) 239, 304, 961
BseMI GCAATG 2 cut(s) 435, 784
BseMII CTCAG 3 cut(s) 100, 186, 554
BseNI ACTGG 3 cut(s) 25, 391, 631
BseSI GKGCMC 1 cut(s) 889
BseXI GCAGC 5 cut(s) 496, 611, 614, 701, 1079
BshFI GGCC 2 cut(s) 266, 943
BshNI GGYRCC 1 cut(s) 650
BshVI ATCGAT 1 cut(s) 285
BsiHKAI GWGCWC 2 cut(s) 115, 889
BsiHKCI CYCGRG 1 cut(s) 969
BsiSI CCGG 1 cut(s) 896
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 3 cut(s) 239, 304, 961
BsmAI GTCTC 2 cut(s) 852, 980
BsmFI GGGAC 1 cut(s) 387
BsnI GGCC 2 cut(s) 266, 943
BsoBI CYCGRG 1 cut(s) 969
Bsp1286I GDGCHC 4 cut(s) 115, 234, 437, 889
Bsp143I GATC 5 cut(s) 453, 617, 827, 892, 1109
BspACI CCGC 3 cut(s) 298, 354, 1030
BspANI GGCC 2 cut(s) 266, 943
BspCNI CTCAG 3 cut(s) 99, 187, 553
BspDI ATCGAT 1 cut(s) 285
BspLI GGNNCC 7 cut(s) 33, 375, 436, 573, 619, 652, 900
BspMAI CTGCAG 1 cut(s) 994
BspMI ACCTGC 1 cut(s) 1010
BspPI GGATC 6 cut(s) 448, 612, 625, 835, 887, 1117
BspQI GCTCTTC 1 cut(s) 441
BspT107I GGYRCC 1 cut(s) 650
BspTI CTTAAG 1 cut(s) 524
BsrDI GCAATG 2 cut(s) 435, 784
BsrI ACTGG 3 cut(s) 25, 391, 631
BssECI CCNNGG 4 cut(s) 234, 337, 646, 699
BssMI GATC 5 cut(s) 453, 617, 827, 892, 1109
BssSI CACGAG 2 cut(s) 753, 849
BssT1I CCWWGG 3 cut(s) 234, 646, 699
Bst2BI CACGAG 2 cut(s) 753, 849
Bst2UI CCWGG 4 cut(s) 339, 378, 576, 940
Bst4CI ACNGT 6 cut(s) 49, 505, 586, 658, 670, 930
Bst6I CTCTTC 3 cut(s) 85, 441, 732
BstAFI CTTAAG 1 cut(s) 524
BstAPI GCANNNNNTGC 1 cut(s) 1073
BstC8I GCNNGC 2 cut(s) 352, 392
BstDEI CTNAG 4 cut(s) 86, 153, 195, 540
BstF5I GGATG 3 cut(s) 333, 512, 1122
BstKTI GATC 5 cut(s) 456, 620, 830, 895, 1112
BstMAI GTCTC 2 cut(s) 852, 980
BstMBI GATC 5 cut(s) 453, 617, 827, 892, 1109
BstMWI GCNNNNNNNGC 5 cut(s) 125, 425, 650, 695, 1073
BstNI CCWGG 4 cut(s) 339, 378, 576, 940
BstSCI CCNGG 4 cut(s) 337, 376, 574, 938
BstSFI CTRYAG 1 cut(s) 990
BstSLI GKGCMC 1 cut(s) 889
BstV1I GCAGC 5 cut(s) 496, 611, 614, 701, 1079
BstX2I RGATCY 4 cut(s) 453, 617, 892, 1109
BstXI CCANNNNNNTGG 1 cut(s) 185
BstYI RGATCY 4 cut(s) 453, 617, 892, 1109
Bsu15I ATCGAT 1 cut(s) 285
Bsu36I CCTNAGG 1 cut(s) 195
BsuI GTATCC 2 cut(s) 808, 848
BsuRI GGCC 2 cut(s) 266, 943
BsuTUI ATCGAT 1 cut(s) 285
BtsCI GGATG 3 cut(s) 333, 512, 1122
BtsIMutI CAGTG 5 cut(s) 45, 638, 654, 924, 926
BveI ACCTGC 1 cut(s) 1010
Cac8I GCNNGC 2 cut(s) 352, 392
CaiI CAGNNNCTG 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 191, 374
ClaI ATCGAT 1 cut(s) 285
CseI GACGC 1 cut(s) 542
Csp6I GTAC 2 cut(s) 292, 1118
CspCI CAANNNNNGTGG 2 cut(s) 643, 678
CviAII CATG 6 cut(s) 179, 185, 532, 596, 719, 859
CviQI GTAC 2 cut(s) 292, 1118
DdeI CTNAG 4 cut(s) 86, 153, 195, 540
DpnI GATC 5 cut(s) 455, 619, 829, 894, 1111
DpnII GATC 5 cut(s) 453, 617, 827, 892, 1109
DriI GACNNNNNGTC 2 cut(s) 197, 584
Eam1104I CTCTTC 3 cut(s) 85, 441, 732
Eam1105I GACNNNNNGTC 2 cut(s) 197, 584
EarI CTCTTC 3 cut(s) 85, 441, 732
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 3 cut(s) 234, 646, 699
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 3 cut(s) 115, 234, 437
Eco47I GGWCC 2 cut(s) 191, 374
Eco53kI GAGCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 1083
Eco81I CCTNAGG 1 cut(s) 195
Eco88I CYCGRG 1 cut(s) 969
EcoICRI GAGCTC 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 374
EcoRII CCWGG 4 cut(s) 337, 376, 574, 938
EcoT14I CCWWGG 3 cut(s) 234, 646, 699
EcoT38I GRGCYC 3 cut(s) 115, 234, 437
ErhI CCWWGG 3 cut(s) 234, 646, 699
FaeI CATG 6 cut(s) 182, 188, 535, 599, 722, 862
FalI AAGNNNNNCTT 2 cut(s) 1056, 1088
FaqI GGGAC 1 cut(s) 387
FatI CATG 6 cut(s) 178, 184, 531, 595, 718, 858
FauI CCCGC 1 cut(s) 1023
FblI GTMKAC 1 cut(s) 795
Fnu4HI GCNGC 5 cut(s) 510, 600, 603, 690, 1068
FokI GGATG 3 cut(s) 320, 499, 1109
FriOI GRGCYC 3 cut(s) 115, 234, 437
Fsp4HI GCNGC 5 cut(s) 510, 600, 603, 690, 1068
FspBI CTAG 2 cut(s) 69, 104
GluI GCNGC 5 cut(s) 510, 600, 603, 690, 1068
HaeIII GGCC 2 cut(s) 266, 943
HapII CCGG 1 cut(s) 896
HgaI GACGC 1 cut(s) 542
Hin1II CATG 6 cut(s) 182, 188, 535, 599, 722, 862
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 3 cut(s) 174, 316, 800
HpaII CCGG 1 cut(s) 896
HphI GGTGA 2 cut(s) 707, 874
Hpy166II GTNNAC 7 cut(s) 8, 43, 76, 191, 292, 796, 887
Hpy188I TCNGA 3 cut(s) 89, 1063, 1084
Hpy188III TCNNGA 4 cut(s) 202, 934, 971, 1107
Hpy8I GTNNAC 7 cut(s) 8, 43, 76, 191, 292, 796, 887
Hpy99I CGWCG 1 cut(s) 558
HpyAV CCTTC 7 cut(s) 330, 424, 467, 498, 679, 805, 954
HpyCH4III ACNGT 6 cut(s) 49, 505, 586, 658, 670, 930
HpyCH4IV ACGT 1 cut(s) 818
HpyCH4V TGCA 8 cut(s) 119, 428, 512, 599, 887, 992, 1019, 1076
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 425, 650, 695, 1073
HpyF3I CTNAG 4 cut(s) 86, 153, 195, 540
HpySE526I ACGT 1 cut(s) 818
Hsp92II CATG 6 cut(s) 182, 188, 535, 599, 722, 862
Kzo9I GATC 5 cut(s) 453, 617, 827, 892, 1109
LguI GCTCTTC 1 cut(s) 441
LmnI GCTCC 1 cut(s) 440
Lsp1109I GCAGC 5 cut(s) 496, 611, 614, 701, 1079
LweI GCATC 3 cut(s) 137, 521, 1006
MaeI CTAG 2 cut(s) 69, 104
MaeII ACGT 1 cut(s) 818
MaeIII GTNAC 4 cut(s) 361, 713, 757, 924
MalI GATC 5 cut(s) 455, 619, 829, 894, 1111
MboI GATC 5 cut(s) 453, 617, 827, 892, 1109
MboII GAAGA 6 cut(s) 72, 224, 268, 458, 716, 749
MflI RGATCY 4 cut(s) 453, 617, 892, 1109
MhlI GDGCHC 4 cut(s) 115, 234, 437, 889
MluCI AATT 4 cut(s) 54, 277, 324, 977
MlyI GAGTC 2 cut(s) 183, 310
MmeI TCCRAC 2 cut(s) 379, 595
MseI TTAA 2 cut(s) 276, 525
MslI CAYNNNNRTG 3 cut(s) 183, 287, 835
MspA1I CMGCKG 2 cut(s) 368, 605
MspCI CTTAAG 1 cut(s) 524
MspI CCGG 1 cut(s) 896
MspR9I CCNGG 4 cut(s) 339, 378, 576, 940
MvaI CCWGG 4 cut(s) 339, 378, 576, 940
MwoI GCNNNNNNNGC 5 cut(s) 125, 425, 650, 695, 1073
NdeII GATC 5 cut(s) 453, 617, 827, 892, 1109
NlaIII CATG 6 cut(s) 182, 188, 535, 599, 722, 862
NlaIV GGNNCC 7 cut(s) 33, 375, 436, 573, 619, 652, 900
NmuCI GTSAC 4 cut(s) 361, 713, 757, 924
PaeR7I CTCGAG 1 cut(s) 969
PceI AGGCCT 1 cut(s) 943
PciSI GCTCTTC 1 cut(s) 441
PfeI GAWTC 1 cut(s) 800
PkrI GCNGC 5 cut(s) 511, 601, 604, 691, 1069
PleI GAGTC 2 cut(s) 182, 310
PpsI GAGTC 2 cut(s) 182, 310
PpuMI RGGWCCY 1 cut(s) 374
PsiI TTATAA 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 4 cut(s) 337, 376, 574, 938
PspGI CCWGG 4 cut(s) 337, 376, 574, 938
PspN4I GGNNCC 7 cut(s) 33, 375, 436, 573, 619, 652, 900
PspPI GGNCC 2 cut(s) 191, 374
PspPPI RGGWCCY 1 cut(s) 374
PstI CTGCAG 1 cut(s) 994
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 4 cut(s) 453, 617, 892, 1109
PvuII CAGCTG 2 cut(s) 368, 605
RsaI GTAC 2 cut(s) 293, 1119
RsaNI GTAC 2 cut(s) 292, 1118
RseI CAYNNNNRTG 3 cut(s) 183, 287, 835
SacI GAGCTC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 276, 525
SatI GCNGC 5 cut(s) 510, 600, 603, 690, 1068
Sau3AI GATC 5 cut(s) 453, 617, 827, 892, 1109
Sau96I GGNCC 2 cut(s) 191, 374
SchI GAGTC 2 cut(s) 183, 310
ScrFI CCNGG 4 cut(s) 339, 378, 576, 940
SduI GDGCHC 4 cut(s) 115, 234, 437, 889
SfaNI GCATC 3 cut(s) 137, 521, 1006
SfcI CTRYAG 1 cut(s) 990
Sfr274I CTCGAG 1 cut(s) 969
SinI GGWCC 2 cut(s) 191, 374
SlaI CTCGAG 1 cut(s) 969
SmiMI CAYNNNNRTG 3 cut(s) 183, 287, 835
SmlI CTYRAG 5 cut(s) 123, 524, 693, 969, 1088
SmoI CTYRAG 5 cut(s) 123, 524, 693, 969, 1088
SpeI ACTAGT 1 cut(s) 103
Sse9I AATT 4 cut(s) 54, 277, 324, 977
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 3 cut(s) 298, 354, 1030
SspMI CTAG 2 cut(s) 69, 104
SstI GAGCTC 1 cut(s) 115
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 4 cut(s) 337, 376, 574, 938
StyI CCWWGG 3 cut(s) 234, 646, 699
TaaI ACNGT 6 cut(s) 49, 505, 586, 658, 670, 930
TaiI ACGT 1 cut(s) 821
TaqI TCGA 3 cut(s) 285, 970, 1036
TasI AATT 4 cut(s) 54, 277, 324, 977
TatI WGTACW 2 cut(s) 291, 1117
TfiI GAWTC 1 cut(s) 800
Tru1I TTAA 2 cut(s) 276, 525
Tru9I TTAA 2 cut(s) 276, 525
TscAI CASTG 5 cut(s) 52, 638, 661, 924, 933
TseFI GTSAC 4 cut(s) 361, 713, 757, 924
TseI GCWGC 5 cut(s) 509, 599, 602, 689, 1067
Tsp45I GTSAC 4 cut(s) 361, 713, 757, 924
TspDTI ATGAA 5 cut(s) 49, 195, 271, 584, 990
TspRI CASTG 5 cut(s) 52, 638, 661, 924, 933
Vha464I CTTAAG 1 cut(s) 524
VneI GTGCAC 1 cut(s) 885
VpaK11BI GGWCC 2 cut(s) 191, 374
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 969
XmiI GTMKAC 1 cut(s) 795
XspI CTAG 2 cut(s) 69, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.