Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002740.1

Orthogroup ID

OG0001661

Physical Location & Seq

Genomic Coordinates Forward (+)

39300 .. 41648

Gene Structure 2349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002740.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgaaatgggaggatgtggaagtaggagagcctaaggagggccaggttcgtgtgaagaacaaagccattgggattaatttcattgatgtatatttccgcaaaggggtttataagacttcatcaattccttacatcccaggtgtcgaggcttgtggagttgtgacagctgttggacctggagtaatcggcaggcaagttggagatgttgtagcctttgctggtggtgcaatgggctcctatgtggaagagctgatccttcctgctaacaaacttgttcctgttcctccttccattgattctactgttgcagcctccctcttgcttaaaggattgacagcgcagtttctactgcatcgttgtttcagggtccagcctggacacacgatcctcgtacatgcagctgctggtggagtcggatcccttttatgccagtgggctaatgcccttggtgccactgtcatcggaactgtatcaactcaagagaaggcatctcaagccaaggaagatggctgtcaccatgtcataatctataaggttgaggactttgttgctcgtgtgactgaaataacatctggcaatggggttgaagttgtctatgattctgtagggaaggatacgtttgagggatcactgagatgcttgaagtttcgtggatacatggtgagttttgggcagtcatcaggtgcaccagatccggttcctctatcagctctttcagtgaagtcactgttcttgaccaggcctaccctcttccattacacagctactcgagatgaattattagagaatgcaggagaggtatttgctaatgttgataaaggtacattgcgggttcgagtaaatcacacctatccattgtctgaagcagcacttgcacattcagacctcgagaataggaaaacatctggatctgtggtacttatcccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003960 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009828 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016651 GO:0016655 GO:0017091 GO:0030312 GO:0032502 GO:0032989 GO:0033554 GO:0034599 GO:0040007 GO:0042221 GO:0042545 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055114 GO:0060560 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

309

Amino Acids

32.95

Weight (kDa)

6.71

Isoelectric Point (pI)

27.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61510 AT5G61510
fragaria_vesca	FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27140
malus_domestica	MD01G1178400.v1.1 MD01G1179500.v1.1 MD01G1180600.v1.1 MD07G1250800.v1.1 MD07G1251000.v1.1
prunus_persica	Prupe.2G133300_v2.0.a1 Prupe.2G133300_v2.0.a1 Prupe.2G274500_v2.0.a1 Prupe.2G274600_v2.0.a1
pyrus_communis	pycom01g18920 pycom01g19010 pycom01g19080 pycom07g22370
rosa_chinensis	RchiOBHm_Chr1g0363511 RchiOBHm_Chr1g0373931 RchiOBHm_Chr1g0373941
rosa_laevigata	RLG00000026793 RLG00000026794 RLG00000027560
rosa_multiflora	Rmu_sc0002022.1_g000001 Rmu_sc0002740.1_g000012 Rmu_sc0008820.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283890 Rroxscaffold_4G00293100
rosa_rugosa	Rorug01G0308000 Rorug01G0379800 Rorug01G0379900
rosa_samantha	Rh1AG316700 Rh1AG390100 Rh1AG390200 Rh1BG280100 Rh1BG354400 Rh1BG354500 Rh1CG296200 Rh1CG367500 Rh1CG367600 Rh1DG311300 Rh1DG385100 Rh1DG385200
rosa_wichuraiana	Rw1G028070 Rw1G034500 Rw1G034510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	449
AciI	CCGC	2 cut(s)	97, 829
AclWI	GGATC	7 cut(s)	247, 379, 411, 424, 634, 686, 916
AcuI	CTGAAG	1 cut(s)	882
AfaI	GTAC	3 cut(s)	393, 823, 918
AfiI	CCNNNNNNNGG	2 cut(s)	38, 103
AgsI	TTSAA	2 cut(s)	587, 643
AjnI	CCWGG	5 cut(s)	42, 136, 175, 373, 737
AluBI	AGCT	5 cut(s)	167, 250, 401, 710, 764
AluI	AGCT	5 cut(s)	167, 250, 401, 710, 764
Alw21I	GWGCWC	1 cut(s)	688
Alw44I	GTGCAC	1 cut(s)	684
AlwI	GGATC	7 cut(s)	247, 379, 411, 424, 634, 686, 916
AlwNI	CAGNNNCTG	1 cut(s)	404
Ama87I	CYCGRG	2 cut(s)	768, 887
AoxI	GGCC	2 cut(s)	40, 740
ApaLI	GTGCAC	1 cut(s)	684
ApeKI	GCWGC	4 cut(s)	308, 398, 401, 866
AseI	ATTAAT	1 cut(s)	75
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	3 cut(s)	40, 173, 367
AsuHPI	GGTGA	2 cut(s)	506, 673
AvaI	CYCGRG	2 cut(s)	768, 887
AvaII	GGWCC	2 cut(s)	173, 367
AxyI	CCTNAGG	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	688
BamHI	GGATCC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	449
BanII	GRGCYC	1 cut(s)	236
BauI	CACGAG	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	688
BbvI	GCAGC	4 cut(s)	320, 388, 410, 878
BccI	CCATC	1 cut(s)	500
BciT130I	CCWGG	5 cut(s)	44, 138, 177, 375, 739
BciVI	GTATCC	2 cut(s)	607, 647
BfmI	CTRYAG	1 cut(s)	603
BfuI	GTATCC	2 cut(s)	607, 647
BisI	GCNGC	4 cut(s)	309, 399, 402, 867
BlsI	GCNGC	4 cut(s)	310, 400, 403, 868
Bme1390I	CCNGG	5 cut(s)	44, 138, 177, 375, 739
Bme18I	GGWCC	2 cut(s)	173, 367
BmeT110I	CYCGRG	2 cut(s)	768, 887
BmgT120I	GGNCC	3 cut(s)	40, 173, 367
BmiI	GGNNCC	5 cut(s)	235, 368, 418, 451, 699
BmrFI	CCNGG	5 cut(s)	44, 138, 177, 375, 739
BmsI	GCATC	3 cut(s)	361, 497, 626
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	462, 477
BsaJI	CCNNGG	3 cut(s)	136, 445, 498
BsaWI	WCCGGW	1 cut(s)	694
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 103
Bse1I	ACTGG	1 cut(s)	430
Bse21I	CCTNAGG	1 cut(s)	33
Bse3DI	GCAATG	3 cut(s)	234, 583, 824
BseBI	CCWGG	5 cut(s)	44, 138, 177, 375, 739
BseDI	CCNNGG	3 cut(s)	136, 445, 498
BseGI	GGATG	2 cut(s)	19, 132
BseLI	CCNNNNNNNGG	2 cut(s)	38, 103
BseMI	GCAATG	3 cut(s)	234, 583, 824
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	1 cut(s)	430
BseSI	GKGCMC	1 cut(s)	688
BseXI	GCAGC	4 cut(s)	320, 388, 410, 878
BshFI	GGCC	2 cut(s)	42, 742
BshNI	GGYRCC	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	688
BsiHKCI	CYCGRG	2 cut(s)	768, 887
BsiSI	CCGG	1 cut(s)	695
BslI	CCNNNNNNNGG	2 cut(s)	38, 103
BsmI	GAATGC	1 cut(s)	793
BsnI	GGCC	2 cut(s)	42, 742
BsoBI	CYCGRG	2 cut(s)	768, 887
Bsp1286I	GDGCHC	2 cut(s)	236, 688
Bsp143I	GATC	6 cut(s)	252, 384, 416, 626, 691, 908
BspACI	CCGC	2 cut(s)	97, 829
BspANI	GGCC	2 cut(s)	42, 742
BspCNI	CTCAG	1 cut(s)	624
BspLI	GGNNCC	5 cut(s)	235, 368, 418, 451, 699
BspPI	GGATC	7 cut(s)	247, 379, 411, 424, 634, 686, 916
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	449
BsrDI	GCAATG	3 cut(s)	234, 583, 824
BsrI	ACTGG	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	136, 445, 498
BssMI	GATC	6 cut(s)	252, 384, 416, 626, 691, 908
BssSI	CACGAG	1 cut(s)	552
BssT1I	CCWWGG	2 cut(s)	445, 498
Bst2BI	CACGAG	1 cut(s)	552
Bst2UI	CCWGG	5 cut(s)	44, 138, 177, 375, 739
Bst4CI	ACNGT	4 cut(s)	304, 457, 469, 729
Bst6I	CTCTTC	2 cut(s)	240, 755
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	33, 632
BstF5I	GGATG	2 cut(s)	19, 132
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	6 cut(s)	255, 387, 419, 629, 694, 911
BstMBI	GATC	6 cut(s)	252, 384, 416, 626, 691, 908
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 449, 494, 872
BstNI	CCWGG	5 cut(s)	44, 138, 177, 375, 739
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	5 cut(s)	42, 136, 175, 373, 737
BstSFI	CTRYAG	1 cut(s)	603
BstSLI	GKGCMC	1 cut(s)	688
BstV1I	GCAGC	4 cut(s)	320, 388, 410, 878
BstX2I	RGATCY	3 cut(s)	416, 691, 908
BstYI	RGATCY	3 cut(s)	416, 691, 908
Bsu36I	CCTNAGG	1 cut(s)	33
BsuI	GTATCC	2 cut(s)	607, 647
BsuRI	GGCC	2 cut(s)	42, 742
BtsCI	GGATG	2 cut(s)	19, 132
BtsIMutI	CAGTG	5 cut(s)	437, 453, 629, 723, 725
Cac8I	GCNNGC	1 cut(s)	191
CaiI	CAGNNNCTG	1 cut(s)	404
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	40, 173, 367
Csp6I	GTAC	3 cut(s)	392, 822, 917
CviAII	CATG	3 cut(s)	395, 518, 658
CviQI	GTAC	3 cut(s)	392, 822, 917
DdeI	CTNAG	2 cut(s)	33, 632
DpnI	GATC	6 cut(s)	254, 386, 418, 628, 693, 910
DpnII	GATC	6 cut(s)	252, 384, 416, 626, 691, 908
Eam1104I	CTCTTC	2 cut(s)	240, 755
EarI	CTCTTC	2 cut(s)	240, 755
Eco130I	CCWWGG	2 cut(s)	445, 498
Eco147I	AGGCCT	1 cut(s)	742
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	173, 367
Eco57I	CTGAAG	1 cut(s)	882
Eco81I	CCTNAGG	1 cut(s)	33
Eco88I	CYCGRG	2 cut(s)	768, 887
EcoRII	CCWGG	5 cut(s)	42, 136, 175, 373, 737
EcoT14I	CCWWGG	2 cut(s)	445, 498
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	2 cut(s)	445, 498
FaeI	CATG	3 cut(s)	398, 521, 661
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FatI	CATG	3 cut(s)	394, 517, 657
FauI	CCCGC	1 cut(s)	822
Fnu4HI	GCNGC	4 cut(s)	309, 399, 402, 867
FokI	GGATG	2 cut(s)	26, 119
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	4 cut(s)	309, 399, 402, 867
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	4 cut(s)	309, 399, 402, 867
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	42, 742
HapII	CCGG	1 cut(s)	695
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	3 cut(s)	398, 521, 661
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	3 cut(s)	296, 411, 599
HpaII	CCGG	1 cut(s)	695
HphI	GGTGA	2 cut(s)	506, 673
Hpy166II	GTNNAC	1 cut(s)	686
Hpy188I	TCNGA	4 cut(s)	416, 464, 862, 883
Hpy188III	TCNNGA	5 cut(s)	479, 733, 770, 889, 906
Hpy8I	GTNNAC	1 cut(s)	686
HpyAV	CCTTC	4 cut(s)	266, 297, 478, 604
HpyCH4III	ACNGT	4 cut(s)	304, 457, 469, 729
HpyCH4IV	ACGT	1 cut(s)	617
HpyCH4V	TGCA	7 cut(s)	227, 308, 352, 398, 686, 791, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 449, 494, 872
HpyF3I	CTNAG	2 cut(s)	33, 632
HpySE526I	ACGT	1 cut(s)	617
Hsp92II	CATG	3 cut(s)	398, 521, 661
HspAI	GCGC	1 cut(s)	338
Kzo9I	GATC	6 cut(s)	252, 384, 416, 626, 691, 908
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	4 cut(s)	320, 388, 410, 878
LweI	GCATC	3 cut(s)	361, 497, 626
MaeII	ACGT	1 cut(s)	617
MaeIII	GTNAC	4 cut(s)	160, 512, 556, 723
MalI	GATC	6 cut(s)	254, 386, 418, 628, 693, 910
MboI	GATC	6 cut(s)	252, 384, 416, 626, 691, 908
MboII	GAAGA	4 cut(s)	67, 257, 515, 742
MflI	RGATCY	3 cut(s)	416, 691, 908
MhlI	GDGCHC	2 cut(s)	236, 688
MluCI	AATT	3 cut(s)	76, 123, 776
MlyI	GAGTC	1 cut(s)	420
MmeI	TCCRAC	3 cut(s)	151, 178, 394
MseI	TTAA	2 cut(s)	75, 324
MslI	CAYNNNNRTG	1 cut(s)	634
MspA1I	CMGCKG	2 cut(s)	167, 401
MspI	CCGG	1 cut(s)	695
MspR9I	CCNGG	5 cut(s)	44, 138, 177, 375, 739
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	5 cut(s)	44, 138, 177, 375, 739
MwoI	GCNNNNNNNGC	4 cut(s)	224, 449, 494, 872
NdeII	GATC	6 cut(s)	252, 384, 416, 626, 691, 908
NlaIII	CATG	3 cut(s)	398, 521, 661
NlaIV	GGNNCC	5 cut(s)	235, 368, 418, 451, 699
NmuCI	GTSAC	4 cut(s)	160, 512, 556, 723
NspI	RCATGY	1 cut(s)	398
PaeR7I	CTCGAG	2 cut(s)	768, 887
PceI	AGGCCT	1 cut(s)	742
PciSI	GCTCTTC	1 cut(s)	240
PctI	GAATGC	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	296, 599
PkrI	GCNGC	4 cut(s)	310, 400, 403, 868
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	75
PsiI	TTATAA	1 cut(s)	111
Psp6I	CCWGG	5 cut(s)	42, 136, 175, 373, 737
PspGI	CCWGG	5 cut(s)	42, 136, 175, 373, 737
PspN4I	GGNNCC	5 cut(s)	235, 368, 418, 451, 699
PspPI	GGNCC	3 cut(s)	40, 173, 367
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	3 cut(s)	416, 691, 908
PvuII	CAGCTG	2 cut(s)	167, 401
RsaI	GTAC	3 cut(s)	393, 823, 918
RsaNI	GTAC	3 cut(s)	392, 822, 917
RseI	CAYNNNNRTG	1 cut(s)	634
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	75, 324
SatI	GCNGC	4 cut(s)	309, 399, 402, 867
Sau3AI	GATC	6 cut(s)	252, 384, 416, 626, 691, 908
Sau96I	GGNCC	3 cut(s)	40, 173, 367
SchI	GAGTC	1 cut(s)	420
ScrFI	CCNGG	5 cut(s)	44, 138, 177, 375, 739
SduI	GDGCHC	2 cut(s)	236, 688
SfaNI	GCATC	3 cut(s)	361, 497, 626
SfcI	CTRYAG	1 cut(s)	603
Sfr274I	CTCGAG	2 cut(s)	768, 887
SinI	GGWCC	2 cut(s)	173, 367
SlaI	CTCGAG	2 cut(s)	768, 887
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	4 cut(s)	477, 492, 768, 887
SmoI	CTYRAG	4 cut(s)	477, 492, 768, 887
Sse9I	AATT	3 cut(s)	76, 123, 776
SseBI	AGGCCT	1 cut(s)	742
SsiI	CCGC	2 cut(s)	97, 829
StuI	AGGCCT	1 cut(s)	742
StyD4I	CCNGG	5 cut(s)	42, 136, 175, 373, 737
StyI	CCWWGG	2 cut(s)	445, 498
TaaI	ACNGT	4 cut(s)	304, 457, 469, 729
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	4 cut(s)	144, 769, 835, 888
TasI	AATT	3 cut(s)	76, 123, 776
TfiI	GAWTC	2 cut(s)	296, 599
Tru1I	TTAA	2 cut(s)	75, 324
Tru9I	TTAA	2 cut(s)	75, 324
TscAI	CASTG	5 cut(s)	437, 460, 636, 723, 732
TseFI	GTSAC	4 cut(s)	160, 512, 556, 723
TseI	GCWGC	4 cut(s)	308, 398, 401, 866
Tsp45I	GTSAC	4 cut(s)	160, 512, 556, 723
TspDTI	ATGAA	4 cut(s)	17, 70, 108, 789
TspRI	CASTG	5 cut(s)	437, 460, 636, 723, 732
VneI	GTGCAC	1 cut(s)	684
VpaK11BI	GGWCC	2 cut(s)	173, 367
VspI	ATTAAT	1 cut(s)	75
XceI	RCATGY	1 cut(s)	398
XhoI	CTCGAG	2 cut(s)	768, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.