Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001661

Physical Location & Seq

Genomic Coordinates Reverse (-)

63866414 .. 63870502

Gene Structure 4089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG367600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGTTAAAGGCATTAGAGTCTATAAACATGGTGGACCTGAGGTCATGAAATGGGAAGATGTGGAAGTAGGAGAGCCTAAGGAGGGCCAGGTTCGTGTGAAGAACAAAGCCATTGGGATTAATTTCATTGATGTATATTTCCGCAAAGGGGTTTATAAGACTTCATCAATTCCTTACATCCCAGGTGTCGAGGCTTGCGGAGTTGTGACAGCTGTTGGACCTGGAGTAACCACCAGGCAAGTTGGAGATGTTGTAGCCTTTGCTGGTGGTGCAATGGGCTCCTATGTGGAAGAGCTGATCCTTCCTGCTAACAAACTTGTTCCTGTTCCTCCTTCCATTGATTCTACTGTTGCAGCATCCCTCTTGCTTAAGGGAATGACAGCGCAGTTTCTACTGCATCGTTGTTTCAAGGTCCAACATGGACACACAATCCTCGTACATGCAGCAGCTGGTGGAGTCGGATCCCTTTTATGCCAGTGGGCTAATGCCCTTGGTGCCACTGTCATCGGAACTGTATCAACTCAAGAGAAGGCATCTCAAGCCAAGGAAGATGGCTGTCACCATGTCATAATCTATAAGGTTGAGGACTTTGTTGCTCGTGTGACTGAAATAACATCTGGCAATGGTGTTGAAGTTGTCTATGATTCTGTAGGGAAGGATACGTTTGAGGGATCATTGAGATGCTTGAAGTTTCGTGGATACATGGTGAGTTTTGGGCAGTCATCAGGTGCACCAGATCCGGTTCCACTATCAGCTCTTTCAGTGAAGTCACTATTCTTGACCAGGCCTACCCTCTTCCATTACACAGCTACTCGAGATGAATTGTTGGAGAATGCAGGAGAGGTATTTGCTAATGTTGATAAAGGTACATTGCGGGTTCGAGTAAATCACACCTACCCATTGTCTGAAGCAGCACTTGCACATTCAGACCTTGAGAATAGGAAAACATCTGGATCTGTGGTACTTATCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003960 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009828 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016651 GO:0016655 GO:0017091 GO:0030312 GO:0032502 GO:0032989 GO:0033554 GO:0034599 GO:0040007 GO:0042221 GO:0042545 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055114 GO:0060560 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

324

Amino Acids

34.67

Weight (kDa)

7.69

Isoelectric Point (pI)

24.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	28 - 110	1.8e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	152 - 272	1.8e-25	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	185 - 322	6.7e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61510 AT5G61510
fragaria_vesca	FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27140
malus_domestica	MD01G1178400.v1.1 MD01G1179500.v1.1 MD01G1180600.v1.1 MD07G1250800.v1.1 MD07G1251000.v1.1
prunus_persica	Prupe.2G133300_v2.0.a1 Prupe.2G133300_v2.0.a1 Prupe.2G274500_v2.0.a1 Prupe.2G274600_v2.0.a1
pyrus_communis	pycom01g18920 pycom01g19010 pycom01g19080 pycom07g22370
rosa_chinensis	RchiOBHm_Chr1g0363511 RchiOBHm_Chr1g0373931 RchiOBHm_Chr1g0373941
rosa_laevigata	RLG00000026793 RLG00000026794 RLG00000027560
rosa_multiflora	Rmu_sc0002022.1_g000001 Rmu_sc0002740.1_g000012 Rmu_sc0008820.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283890 Rroxscaffold_4G00293100
rosa_rugosa	Rorug01G0308000 Rorug01G0379800 Rorug01G0379900
rosa_samantha	Rh1AG316700 Rh1AG390100 Rh1AG390200 Rh1BG280100 Rh1BG354400 Rh1BG354500 Rh1CG296200 Rh1CG367500 Rh1CG367600 Rh1DG311300 Rh1DG385100 Rh1DG385200
rosa_wichuraiana	Rw1G028070 Rw1G034500 Rw1G034510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	494
AciI	CCGC	3 cut(s)	142, 198, 874
AclWI	GGATC	6 cut(s)	292, 456, 469, 679, 731, 961
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	3 cut(s)	438, 868, 963
AfiI	CCNNNNNNNGG	2 cut(s)	83, 148
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	409, 632, 688
AhdI	GACNNNNNGTC	1 cut(s)	41
AjnI	CCWGG	5 cut(s)	87, 181, 220, 233, 782
AluBI	AGCT	5 cut(s)	212, 295, 449, 755, 809
AluI	AGCT	5 cut(s)	212, 295, 449, 755, 809
Alw21I	GWGCWC	1 cut(s)	733
Alw44I	GTGCAC	1 cut(s)	729
AlwI	GGATC	6 cut(s)	292, 456, 469, 679, 731, 961
AlwNI	CAGNNNCTG	1 cut(s)	449
Ama87I	CYCGRG	1 cut(s)	813
AoxI	GGCC	2 cut(s)	85, 785
ApaLI	GTGCAC	1 cut(s)	729
ApeKI	GCWGC	4 cut(s)	353, 443, 446, 911
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	385
AspS9I	GGNCC	4 cut(s)	35, 85, 218, 412
AsuHPI	GGTGA	2 cut(s)	551, 718
AvaI	CYCGRG	1 cut(s)	813
AvaII	GGWCC	3 cut(s)	35, 218, 412
AxyI	CCTNAGG	2 cut(s)	39, 78
BaeGI	GKGCMC	1 cut(s)	733
BamHI	GGATCC	1 cut(s)	461
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	281
BauI	CACGAG	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	733
BbvI	GCAGC	4 cut(s)	365, 455, 458, 923
BccI	CCATC	1 cut(s)	545
BciT130I	CCWGG	5 cut(s)	89, 183, 222, 235, 784
BciVI	GTATCC	2 cut(s)	652, 692
BfmI	CTRYAG	1 cut(s)	648
BfrI	CTTAAG	1 cut(s)	368
BfuI	GTATCC	2 cut(s)	652, 692
BisI	GCNGC	4 cut(s)	354, 444, 447, 912
BlsI	GCNGC	4 cut(s)	355, 445, 448, 913
Bme1390I	CCNGG	5 cut(s)	89, 183, 222, 235, 784
Bme18I	GGWCC	3 cut(s)	35, 218, 412
BmeRI	GACNNNNNGTC	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	813
BmgT120I	GGNCC	4 cut(s)	35, 85, 218, 412
BmiI	GGNNCC	4 cut(s)	280, 463, 496, 744
BmrFI	CCNGG	5 cut(s)	89, 183, 222, 235, 784
BmsI	GCATC	4 cut(s)	365, 406, 542, 671
BpmI	CTGGAG	1 cut(s)	243
BpuEI	CTTGAG	3 cut(s)	507, 522, 953
BsaJI	CCNNGG	3 cut(s)	181, 490, 543
BsaWI	WCCGGW	1 cut(s)	739
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 148
Bse1I	ACTGG	1 cut(s)	475
Bse21I	CCTNAGG	2 cut(s)	39, 78
Bse3DI	GCAATG	3 cut(s)	279, 628, 869
BseBI	CCWGG	5 cut(s)	89, 183, 222, 235, 784
BseDI	CCNNGG	3 cut(s)	181, 490, 543
BseGI	GGATG	2 cut(s)	177, 356
BseLI	CCNNNNNNNGG	2 cut(s)	83, 148
BseMI	GCAATG	3 cut(s)	279, 628, 869
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	1 cut(s)	475
BseSI	GKGCMC	1 cut(s)	733
BseXI	GCAGC	4 cut(s)	365, 455, 458, 923
BshFI	GGCC	2 cut(s)	87, 787
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	813
BsiSI	CCGG	1 cut(s)	740
BslI	CCNNNNNNNGG	2 cut(s)	83, 148
BsmI	GAATGC	1 cut(s)	838
BsnI	GGCC	2 cut(s)	87, 787
BsoBI	CYCGRG	1 cut(s)	813
Bsp1286I	GDGCHC	2 cut(s)	281, 733
Bsp143I	GATC	5 cut(s)	297, 461, 671, 736, 953
BspACI	CCGC	3 cut(s)	142, 198, 874
BspANI	GGCC	2 cut(s)	87, 787
BspCNI	CTCAG	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	280, 463, 496, 744
BspPI	GGATC	6 cut(s)	292, 456, 469, 679, 731, 961
BspQI	GCTCTTC	1 cut(s)	285
BspT107I	GGYRCC	1 cut(s)	494
BspTI	CTTAAG	1 cut(s)	368
BsrDI	GCAATG	3 cut(s)	279, 628, 869
BsrI	ACTGG	1 cut(s)	475
BssECI	CCNNGG	3 cut(s)	181, 490, 543
BssMI	GATC	5 cut(s)	297, 461, 671, 736, 953
BssSI	CACGAG	1 cut(s)	597
BssT1I	CCWWGG	2 cut(s)	490, 543
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	5 cut(s)	89, 183, 222, 235, 784
Bst4CI	ACNGT	3 cut(s)	349, 502, 514
Bst6I	CTCTTC	2 cut(s)	285, 800
BstAFI	CTTAAG	1 cut(s)	368
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	39, 78
BstF5I	GGATG	2 cut(s)	177, 356
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	5 cut(s)	300, 464, 674, 739, 956
BstMBI	GATC	5 cut(s)	297, 461, 671, 736, 953
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 494, 539, 917
BstNI	CCWGG	5 cut(s)	89, 183, 222, 235, 784
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	5 cut(s)	87, 181, 220, 233, 782
BstSFI	CTRYAG	1 cut(s)	648
BstSLI	GKGCMC	1 cut(s)	733
BstV1I	GCAGC	4 cut(s)	365, 455, 458, 923
BstX2I	RGATCY	3 cut(s)	461, 736, 953
BstYI	RGATCY	3 cut(s)	461, 736, 953
Bsu36I	CCTNAGG	2 cut(s)	39, 78
BsuI	GTATCC	2 cut(s)	652, 692
BsuRI	GGCC	2 cut(s)	87, 787
BtsCI	GGATG	2 cut(s)	177, 356
BtsIMutI	CAGTG	3 cut(s)	482, 498, 768
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	449
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	385
Cfr13I	GGNCC	4 cut(s)	35, 85, 218, 412
Csp6I	GTAC	3 cut(s)	437, 867, 962
CviAII	CATG	6 cut(s)	29, 46, 419, 440, 563, 703
CviQI	GTAC	3 cut(s)	437, 867, 962
DdeI	CTNAG	2 cut(s)	39, 78
DpnI	GATC	5 cut(s)	299, 463, 673, 738, 955
DpnII	GATC	5 cut(s)	297, 461, 671, 736, 953
DriI	GACNNNNNGTC	1 cut(s)	41
Eam1104I	CTCTTC	2 cut(s)	285, 800
Eam1105I	GACNNNNNGTC	1 cut(s)	41
EarI	CTCTTC	2 cut(s)	285, 800
Eco130I	CCWWGG	2 cut(s)	490, 543
Eco147I	AGGCCT	1 cut(s)	787
Eco24I	GRGCYC	1 cut(s)	281
Eco47I	GGWCC	3 cut(s)	35, 218, 412
Eco57I	CTGAAG	1 cut(s)	927
Eco81I	CCTNAGG	2 cut(s)	39, 78
Eco88I	CYCGRG	1 cut(s)	813
EcoRII	CCWGG	5 cut(s)	87, 181, 220, 233, 782
EcoT14I	CCWWGG	2 cut(s)	490, 543
EcoT38I	GRGCYC	1 cut(s)	281
ErhI	CCWWGG	2 cut(s)	490, 543
FaeI	CATG	6 cut(s)	32, 49, 422, 443, 566, 706
FalI	AAGNNNNNCTT	2 cut(s)	900, 932
FatI	CATG	6 cut(s)	28, 45, 418, 439, 562, 702
FauI	CCCGC	1 cut(s)	867
Fnu4HI	GCNGC	4 cut(s)	354, 444, 447, 912
FokI	GGATG	2 cut(s)	164, 343
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	4 cut(s)	354, 444, 447, 912
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	4 cut(s)	354, 444, 447, 912
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	2 cut(s)	87, 787
HapII	CCGG	1 cut(s)	740
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	6 cut(s)	32, 49, 422, 443, 566, 706
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HinfI	GANTC	4 cut(s)	18, 341, 456, 644
HpaII	CCGG	1 cut(s)	740
HphI	GGTGA	2 cut(s)	551, 718
Hpy166II	GTNNAC	2 cut(s)	35, 731
Hpy188I	TCNGA	4 cut(s)	461, 509, 907, 928
Hpy188III	TCNNGA	5 cut(s)	46, 524, 778, 815, 951
Hpy8I	GTNNAC	2 cut(s)	35, 731
HpyAV	CCTTC	4 cut(s)	311, 342, 523, 649
HpyCH4III	ACNGT	3 cut(s)	349, 502, 514
HpyCH4IV	ACGT	1 cut(s)	662
HpyCH4V	TGCA	7 cut(s)	272, 353, 397, 443, 731, 836, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 494, 539, 917
HpyF3I	CTNAG	2 cut(s)	39, 78
HpySE526I	ACGT	1 cut(s)	662
Hsp92II	CATG	6 cut(s)	32, 49, 422, 443, 566, 706
HspAI	GCGC	1 cut(s)	383
Kzo9I	GATC	5 cut(s)	297, 461, 671, 736, 953
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	284
Lsp1109I	GCAGC	4 cut(s)	365, 455, 458, 923
LweI	GCATC	4 cut(s)	365, 406, 542, 671
MaeII	ACGT	1 cut(s)	662
MaeIII	GTNAC	5 cut(s)	205, 226, 557, 601, 768
MalI	GATC	5 cut(s)	299, 463, 673, 738, 955
MboI	GATC	5 cut(s)	297, 461, 671, 736, 953
MboII	GAAGA	5 cut(s)	68, 112, 302, 560, 787
MflI	RGATCY	3 cut(s)	461, 736, 953
MhlI	GDGCHC	2 cut(s)	281, 733
MluCI	AATT	3 cut(s)	121, 168, 821
MlyI	GAGTC	2 cut(s)	27, 465
MmeI	TCCRAC	5 cut(s)	196, 223, 439, 439, 807
MseI	TTAA	3 cut(s)	6, 120, 369
MslI	CAYNNNNRTG	1 cut(s)	679
MspA1I	CMGCKG	2 cut(s)	212, 449
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	740
MspR9I	CCNGG	5 cut(s)	89, 183, 222, 235, 784
Mva1269I	GAATGC	1 cut(s)	838
MvaI	CCWGG	5 cut(s)	89, 183, 222, 235, 784
MwoI	GCNNNNNNNGC	4 cut(s)	269, 494, 539, 917
NdeII	GATC	5 cut(s)	297, 461, 671, 736, 953
NlaIII	CATG	6 cut(s)	32, 49, 422, 443, 566, 706
NlaIV	GGNNCC	4 cut(s)	280, 463, 496, 744
NmuCI	GTSAC	4 cut(s)	205, 557, 601, 768
NspI	RCATGY	1 cut(s)	443
PaeR7I	CTCGAG	1 cut(s)	813
PagI	TCATGA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	787
PciSI	GCTCTTC	1 cut(s)	285
PctI	GAATGC	1 cut(s)	838
PfeI	GAWTC	2 cut(s)	341, 644
PkrI	GCNGC	4 cut(s)	355, 445, 448, 913
PleI	GAGTC	2 cut(s)	26, 464
PpsI	GAGTC	2 cut(s)	26, 464
PshBI	ATTAAT	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	5 cut(s)	87, 181, 220, 233, 782
PspGI	CCWGG	5 cut(s)	87, 181, 220, 233, 782
PspN4I	GGNNCC	4 cut(s)	280, 463, 496, 744
PspPI	GGNCC	4 cut(s)	35, 85, 218, 412
PstNI	CAGNNNCTG	1 cut(s)	449
PsuI	RGATCY	3 cut(s)	461, 736, 953
PvuII	CAGCTG	2 cut(s)	212, 449
RsaI	GTAC	3 cut(s)	438, 868, 963
RsaNI	GTAC	3 cut(s)	437, 867, 962
RseI	CAYNNNNRTG	1 cut(s)	679
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	3 cut(s)	6, 120, 369
SatI	GCNGC	4 cut(s)	354, 444, 447, 912
Sau3AI	GATC	5 cut(s)	297, 461, 671, 736, 953
Sau96I	GGNCC	4 cut(s)	35, 85, 218, 412
SchI	GAGTC	2 cut(s)	27, 465
ScrFI	CCNGG	5 cut(s)	89, 183, 222, 235, 784
SduI	GDGCHC	2 cut(s)	281, 733
SfaNI	GCATC	4 cut(s)	365, 406, 542, 671
SfcI	CTRYAG	1 cut(s)	648
Sfr274I	CTCGAG	1 cut(s)	813
SinI	GGWCC	3 cut(s)	35, 218, 412
SlaI	CTCGAG	1 cut(s)	813
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	5 cut(s)	368, 522, 537, 813, 932
SmoI	CTYRAG	5 cut(s)	368, 522, 537, 813, 932
Sse9I	AATT	3 cut(s)	121, 168, 821
SseBI	AGGCCT	1 cut(s)	787
SsiI	CCGC	3 cut(s)	142, 198, 874
StuI	AGGCCT	1 cut(s)	787
StyD4I	CCNGG	5 cut(s)	87, 181, 220, 233, 782
StyI	CCWWGG	2 cut(s)	490, 543
TaaI	ACNGT	3 cut(s)	349, 502, 514
TaiI	ACGT	1 cut(s)	665
TaqI	TCGA	3 cut(s)	189, 814, 880
TasI	AATT	3 cut(s)	121, 168, 821
TfiI	GAWTC	2 cut(s)	341, 644
Tru1I	TTAA	3 cut(s)	6, 120, 369
Tru9I	TTAA	3 cut(s)	6, 120, 369
TscAI	CASTG	3 cut(s)	482, 505, 768
TseFI	GTSAC	4 cut(s)	205, 557, 601, 768
TseI	GCWGC	4 cut(s)	353, 443, 446, 911
Tsp45I	GTSAC	4 cut(s)	205, 557, 601, 768
TspDTI	ATGAA	4 cut(s)	62, 115, 153, 834
TspRI	CASTG	3 cut(s)	482, 505, 768
Vha464I	CTTAAG	1 cut(s)	368
VneI	GTGCAC	1 cut(s)	729
VpaK11BI	GGWCC	3 cut(s)	35, 218, 412
VspI	ATTAAT	1 cut(s)	120
XceI	RCATGY	1 cut(s)	443
XhoI	CTCGAG	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.