Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001661

Physical Location & Seq

Genomic Coordinates Forward (+)

42490037 .. 42495065

Gene Structure 5029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0308000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAAGACGTTACAGAGTGGGCAAGAAATACAATCTTCAAACCAAGCTATACATGATACACAAGGTGACCAAGTGAAAAACCAAACAAATGAGGCTCCTGGAACTGATTCAGCTTCAATATCATCTTCAGGCAATGACAACAAGAAAGTATCACGCCAAGATATTGAACTTGTCCAGAATCTAATAGAGCGGTGTTTACAATTATATATGAATAGAGAAGAGGTGGTTAAGACTCTCTTGACTCGCGCAAGAATAGATCCTGGATTTACCACTTTGGTATGGCAGAAGTTGGAAGAAGAAAATGCTGACTTTTTCAGGGCCTATTACATAAGGCTAAAATTGAAGAAACAAATCATCCTGTTTAATCATCTACTGGAGCATCACTGTCATCTGTCGAAGTATCATCCCATGCATCCAAAGGTTCCTTTGGCACCTATACAGAATGGGATTCATCCCATGCCTGTTAACAACTTACCTATGGGATACCCTGTCCTTCAGCAACCTCCAATGCGGGCAGCAGGTCAACCCCATCTTGATTCCATGGGAATATCTAACTGTCATGTAGTTAATGGAGTTCCCGCACCGAGCAATTTCCATCCAATTCGGATGAATTCTGGGAATGATATGGTGATGGACTGCAGTAGTTCTGATGTGGTTCCTGTAATTCCACCAAACAGCAACATGTCATCCATGTCCGAAATTCCTGTAAGTCCTACATCAGTTGCATCCAGTGGTCATTTCCCTTTCACTGCATCAGAAATATCAGGAATGGGAGTAGACACATCGGCACTTGATACAACATTTACATCTGATGTGGCAAGTAATGGGTTGCAGCTTGGACCCGATGGTGGGGGTGGCAGATCACTGGATCAGATCCAGTGGAATTTCAGCCTATCAGATCTTACAGCAGATTTGTCCAACTTAGGAGATTTAGGAGCCTTGGGAAACTATCCTGGCTCCCCCTTTCTGCCTTCTGATTCTGAAATTCTACTCGACTCTCCCGAGCAAGAGGATATAGAGGAATTCTTTGTCGATTCTGTCCCCGAGCCACCTTGCTCTCAATCAGATGAGGAGAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003960 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009828 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016651 GO:0016655 GO:0017091 GO:0030312 GO:0032502 GO:0032989 GO:0033554 GO:0034599 GO:0040007 GO:0042221 GO:0042545 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055114 GO:0060560 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

360

Amino Acids

39.32

Weight (kDa)

4.75

Isoelectric Point (pI)

62.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
A_thal_3526	PF09713	58 - 109	1.9e-25	Plant protein 1589 of unknown function (A_thal_3526)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61510 AT5G61510
fragaria_vesca	FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27140
malus_domestica	MD01G1178400.v1.1 MD01G1179500.v1.1 MD01G1180600.v1.1 MD07G1250800.v1.1 MD07G1251000.v1.1
prunus_persica	Prupe.2G133300_v2.0.a1 Prupe.2G133300_v2.0.a1 Prupe.2G274500_v2.0.a1 Prupe.2G274600_v2.0.a1
pyrus_communis	pycom01g18920 pycom01g19010 pycom01g19080 pycom07g22370
rosa_chinensis	RchiOBHm_Chr1g0363511 RchiOBHm_Chr1g0373931 RchiOBHm_Chr1g0373941
rosa_laevigata	RLG00000026793 RLG00000026794 RLG00000027560
rosa_multiflora	Rmu_sc0002022.1_g000001 Rmu_sc0002740.1_g000012 Rmu_sc0008820.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283890 Rroxscaffold_4G00293100
rosa_rugosa	Rorug01G0308000 Rorug01G0379800 Rorug01G0379900
rosa_samantha	Rh1AG316700 Rh1AG390100 Rh1AG390200 Rh1BG280100 Rh1BG354400 Rh1BG354500 Rh1CG296200 Rh1CG367500 Rh1CG367600 Rh1DG311300 Rh1DG385100 Rh1DG385200
rosa_wichuraiana	Rw1G028070 Rw1G034500 Rw1G034510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	430
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	777
AccII	CGCG	1 cut(s)	246
AciI	CCGC	3 cut(s)	190, 511, 579
AclWI	GGATC	3 cut(s)	251, 868, 876
AcsI	RAATTY	5 cut(s)	610, 699, 883, 984, 1022
AcuI	CTGAAG	2 cut(s)	111, 479
AdeI	CACNNNGTG	1 cut(s)	65
AfiI	CCNNNNNNNGG	2 cut(s)	848, 849
AflIII	ACRYGT	1 cut(s)	681
AgsI	TTSAA	4 cut(s)	39, 117, 167, 343
AjnI	CCWGG	3 cut(s)	97, 259, 952
AluBI	AGCT	3 cut(s)	47, 113, 835
AluI	AGCT	3 cut(s)	47, 113, 835
AlwI	GGATC	3 cut(s)	251, 868, 876
Ama87I	CYCGRG	2 cut(s)	1001, 1043
AoxI	GGCC	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	515, 832
ApoI	RAATTY	5 cut(s)	610, 699, 883, 984, 1022
Asp700I	GAANNNNTTC	1 cut(s)	106
AspLEI	GCGC	1 cut(s)	248
AspS9I	GGNCC	2 cut(s)	318, 839
AsuHPI	GGTGA	2 cut(s)	77, 640
AvaI	CYCGRG	2 cut(s)	1001, 1043
AvaII	GGWCC	1 cut(s)	839
BanI	GGYRCC	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	527, 844
BccI	CCATC	4 cut(s)	537, 603, 625, 839
BciT130I	CCWGG	3 cut(s)	99, 261, 954
BciVI	GTATCC	1 cut(s)	476
BfaI	CTAG	1 cut(s)	1081
BfmI	CTRYAG	1 cut(s)	637
BfuAI	ACCTGC	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	476
BglII	AGATCT	1 cut(s)	898
BisI	GCNGC	2 cut(s)	516, 833
BlsI	GCNGC	2 cut(s)	517, 834
Bme1390I	CCNGG	3 cut(s)	99, 261, 954
Bme18I	GGWCC	1 cut(s)	839
BmeT110I	CYCGRG	2 cut(s)	1001, 1043
BmgT120I	GGNCC	2 cut(s)	318, 839
BmiI	GGNNCC	7 cut(s)	96, 423, 432, 657, 841, 937, 958
BmrFI	CCNGG	3 cut(s)	99, 261, 954
BmsI	GCATC	4 cut(s)	388, 421, 734, 761
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	540, 939
Bsc4I	CCNNNNNNNGG	2 cut(s)	848, 849
Bse1I	ACTGG	4 cut(s)	378, 729, 870, 877
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	3 cut(s)	99, 261, 954
BseDI	CCNNGG	2 cut(s)	540, 939
BseGI	GGATG	8 cut(s)	354, 403, 412, 451, 595, 612, 686, 725
BseLI	CCNNNNNNNGG	2 cut(s)	848, 849
BseMI	GCAATG	1 cut(s)	139
BseNI	ACTGG	4 cut(s)	378, 729, 870, 877
BseXI	GCAGC	2 cut(s)	527, 844
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	1 cut(s)	430
BsiHKCI	CYCGRG	2 cut(s)	1001, 1043
BslFI	GGGAC	1 cut(s)	1025
BslI	CCNNNNNNNGG	2 cut(s)	848, 849
BsmFI	GGGAC	1 cut(s)	1025
BsnI	GGCC	1 cut(s)	320
BsoBI	CYCGRG	2 cut(s)	1001, 1043
Bsp143I	GATC	5 cut(s)	256, 860, 868, 873, 898
Bsp19I	CCATGG	1 cut(s)	540
BspACI	CCGC	3 cut(s)	190, 511, 579
BspANI	GGCC	1 cut(s)	320
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	7 cut(s)	96, 423, 432, 657, 841, 937, 958
BspMAI	CTGCAG	1 cut(s)	641
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	3 cut(s)	251, 868, 876
BspT107I	GGYRCC	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	139
BsrI	ACTGG	4 cut(s)	378, 729, 870, 877
BssECI	CCNNGG	2 cut(s)	540, 939
BssMI	GATC	5 cut(s)	256, 860, 868, 873, 898
BssT1I	CCWWGG	2 cut(s)	540, 939
Bst2UI	CCWGG	3 cut(s)	99, 261, 954
Bst4CI	ACNGT	2 cut(s)	386, 557
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	1 cut(s)	922
BstDSI	CCRYGG	1 cut(s)	540
BstEII	GGTNACC	1 cut(s)	65
BstF5I	GGATG	8 cut(s)	354, 403, 412, 451, 595, 612, 686, 725
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	248
BstKTI	GATC	5 cut(s)	259, 863, 871, 876, 901
BstMBI	GATC	5 cut(s)	256, 860, 868, 873, 898
BstNI	CCWGG	3 cut(s)	99, 261, 954
BstNSI	RCATGY	1 cut(s)	685
BstPI	GGTNACC	1 cut(s)	65
BstSCI	CCNGG	3 cut(s)	97, 259, 952
BstSFI	CTRYAG	1 cut(s)	637
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	527, 844
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	3 cut(s)	256, 873, 898
BstYI	RGATCY	3 cut(s)	256, 873, 898
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	320
BtgI	CCRYGG	1 cut(s)	540
BtsCI	GGATG	8 cut(s)	354, 403, 412, 451, 595, 612, 686, 725
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	5 cut(s)	382, 736, 747, 863, 884
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	513
CfoI	GCGC	1 cut(s)	248
Cfr13I	GGNCC	2 cut(s)	318, 839
CviAII	CATG	7 cut(s)	53, 409, 457, 541, 560, 682, 691
DdeI	CTNAG	1 cut(s)	922
DpnI	GATC	5 cut(s)	258, 862, 870, 875, 900
DpnII	GATC	5 cut(s)	256, 860, 868, 873, 898
DraIII	CACNNNGTG	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	2 cut(s)	540, 939
Eco47I	GGWCC	1 cut(s)	839
Eco57I	CTGAAG	2 cut(s)	111, 479
Eco88I	CYCGRG	2 cut(s)	1001, 1043
Eco91I	GGTNACC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	318
EcoO65I	GGTNACC	1 cut(s)	65
EcoRI	GAATTC	2 cut(s)	610, 1022
EcoRII	CCWGG	3 cut(s)	97, 259, 952
EcoT14I	CCWWGG	2 cut(s)	540, 939
EcoT22I	ATGCAT	1 cut(s)	414
ErhI	CCWWGG	2 cut(s)	540, 939
FaeI	CATG	7 cut(s)	56, 412, 460, 544, 563, 685, 694
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	1 cut(s)	1025
FatI	CATG	7 cut(s)	52, 408, 456, 540, 559, 681, 690
FauI	CCCGC	2 cut(s)	504, 586
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	2 cut(s)	516, 833
FokI	GGATG	8 cut(s)	341, 390, 399, 438, 582, 619, 673, 712
Fsp4HI	GCNGC	2 cut(s)	516, 833
FspBI	CTAG	1 cut(s)	1081
GlaI	GCGC	1 cut(s)	247
GluI	GCNGC	2 cut(s)	516, 833
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	320
HhaI	GCGC	1 cut(s)	248
Hin1II	CATG	7 cut(s)	56, 412, 460, 544, 563, 685, 694
Hin6I	GCGC	1 cut(s)	246
HinP1I	GCGC	1 cut(s)	246
HincII	GTYRAC	2 cut(s)	466, 524
HindII	GTYRAC	2 cut(s)	466, 524
HinfI	GANTC	9 cut(s)	107, 178, 232, 241, 448, 536, 977, 995, 1034
HpaI	GTTAAC	1 cut(s)	466
HphI	GGTGA	2 cut(s)	77, 640
Hpy166II	GTNNAC	4 cut(s)	197, 466, 524, 778
Hpy188III	TCNNGA	5 cut(s)	175, 238, 533, 765, 1001
Hpy8I	GTNNAC	4 cut(s)	197, 466, 524, 778
HpyAV	CCTTC	2 cut(s)	503, 981
HpyCH4III	ACNGT	2 cut(s)	386, 557
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	5 cut(s)	412, 639, 725, 752, 832
HpyF3I	CTNAG	1 cut(s)	922
HpySE526I	ACGT	1 cut(s)	8
Hsp92II	CATG	7 cut(s)	56, 412, 460, 544, 563, 685, 694
HspAI	GCGC	1 cut(s)	246
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	5 cut(s)	256, 860, 868, 873, 898
LmnI	GCTCC	4 cut(s)	100, 376, 935, 962
Lsp1109I	GCAGC	2 cut(s)	527, 844
LweI	GCATC	4 cut(s)	388, 421, 734, 761
MaeI	CTAG	1 cut(s)	1081
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	2 cut(s)	9, 65
MalI	GATC	5 cut(s)	258, 862, 870, 875, 900
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	5 cut(s)	256, 860, 868, 873, 898
MboII	GAAGA	7 cut(s)	16, 27, 117, 230, 305, 308, 355
MflI	RGATCY	3 cut(s)	256, 873, 898
MlyI	GAGTC	3 cut(s)	226, 235, 989
MmeI	TCCRAC	2 cut(s)	270, 942
MnlI	CCTC	6 cut(s)	85, 214, 513, 1003, 1012, 1063
Mph1103I	ATGCAT	1 cut(s)	414
MroXI	GAANNNNTTC	1 cut(s)	106
MseI	TTAA	4 cut(s)	228, 363, 465, 567
MspR9I	CCNGG	3 cut(s)	99, 261, 954
MvaI	CCWGG	3 cut(s)	99, 261, 954
MvnI	CGCG	1 cut(s)	246
NcoI	CCATGG	1 cut(s)	540
NdeII	GATC	5 cut(s)	256, 860, 868, 873, 898
NlaIII	CATG	7 cut(s)	56, 412, 460, 544, 563, 685, 694
NlaIV	GGNNCC	7 cut(s)	96, 423, 432, 657, 841, 937, 958
NmuCI	GTSAC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	1 cut(s)	685
PciI	ACATGT	1 cut(s)	681
PcsI	WCGNNNNNNNCGW	1 cut(s)	999
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	6 cut(s)	107, 178, 448, 536, 977, 1034
PfoI	TCCNGGA	2 cut(s)	97, 259
PkrI	GCNGC	2 cut(s)	517, 834
PleI	GAGTC	3 cut(s)	226, 235, 989
PpsI	GAGTC	3 cut(s)	226, 235, 989
PscI	ACATGT	1 cut(s)	681
Psp6I	CCWGG	3 cut(s)	97, 259, 952
PspEI	GGTNACC	1 cut(s)	65
PspGI	CCWGG	3 cut(s)	97, 259, 952
PspN4I	GGNNCC	7 cut(s)	96, 423, 432, 657, 841, 937, 958
PspPI	GGNCC	2 cut(s)	318, 839
PstI	CTGCAG	1 cut(s)	641
PsuI	RGATCY	3 cut(s)	256, 873, 898
SaqAI	TTAA	4 cut(s)	228, 363, 465, 567
SatI	GCNGC	2 cut(s)	516, 833
Sau3AI	GATC	5 cut(s)	256, 860, 868, 873, 898
Sau96I	GGNCC	2 cut(s)	318, 839
SchI	GAGTC	3 cut(s)	226, 235, 989
ScrFI	CCNGG	3 cut(s)	99, 261, 954
SfaNI	GCATC	4 cut(s)	388, 421, 734, 761
SfcI	CTRYAG	1 cut(s)	637
SinI	GGWCC	1 cut(s)	839
SsiI	CCGC	3 cut(s)	190, 511, 579
SspMI	CTAG	1 cut(s)	1081
StyD4I	CCNGG	3 cut(s)	97, 259, 952
StyI	CCWWGG	2 cut(s)	540, 939
TaaI	ACNGT	2 cut(s)	386, 557
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	395, 993, 1032
TfiI	GAWTC	6 cut(s)	107, 178, 448, 536, 977, 1034
Tru1I	TTAA	4 cut(s)	228, 363, 465, 567
Tru9I	TTAA	4 cut(s)	228, 363, 465, 567
TscAI	CASTG	5 cut(s)	389, 736, 754, 870, 884
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	515, 832
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	4 cut(s)	17, 224, 440, 623
TspRI	CASTG	5 cut(s)	389, 736, 754, 870, 884
VpaK11BI	GGWCC	1 cut(s)	839
XapI	RAATTY	5 cut(s)	610, 699, 883, 984, 1022
XceI	RCATGY	1 cut(s)	685
XmiI	GTMKAC	1 cut(s)	777
XmnI	GAANNNNTTC	1 cut(s)	106
XspI	CTAG	1 cut(s)	1081
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.