RchiOBHm_Chr1g0373941

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
61902906 .. 61905907
3002 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59777

Sequence Viewer

Length: 1089 bp
ATGGTTAAAGGCATTAGAGTCCATAAACATGGTGGACCTGAGGTCATGAAATGGGAGGATGTGGAAGTAGGAGAGCCTAAGGAGGGCCAGGTTCGTGTGAAGAACAAAGCCATTGGGATTAATTTCATTGATGTATATTTCCGCAAAGGGGTTTATAAGACTTCATCAATTCCTTACATCCCAGGTGTCGAGGCTTGTGGAGTTGTGACAGCTGTTGGACCTGGAGTAATCGGCAGGCAAGTTGGAGATGTTGTAGCCTTTGCTGGTGGTGCAATGGGCTCCTATGTGGAAGAGCTGATCCTTCCTGCTAACAAACTTGTTCCTGTTCCTCCTTCCATTGATTCTACTGTTGCAGCCTCCCTCTTGCTTAAAGGATTGACAGCGCAGTTTCTACTGCATCGTTGTTTCAGGATCCAGCCTGGACACACGATCCTCGTACATGCAGCTGCTGGTGGAGTCGGATCCCTTTTATGCCAGTGGGCTAATGCCATTGGTGCCACTGTCATCGGAACTGTATCAACTCAAGAGAAGGCATCTCAAGCCAAGGAAGATGGCTGTCACCATGTCATAATCTATAAGGTTGAGGACTTTGTTGCTCGTGTGACTGAAATAACATCTGGCAATGGGGTTGAAGTTGTCTATGATTCTGTAGGGAAGGATACGTTTGAGGTAACCTGTCTTCATTCTCTACACAGGAAAAAAAAAAAAAAACAGAACCGAGAGAATTTATTGAGAAAGATCATTCTATGTTCAGATTCTACCCGAGCACGTTTTAGGGTTTTGGGATCACTGAGATGCTTGAAGTTTCGTGGATACATGGTGAGTTTTGGGCAGTCATCAGGTGCACCAGATCCGGTTCCTCTATCAGCTCTTTCAGTGAAGTCACTGTTCTTGACCAGGCCTACCCTCTTCCATTACACAGCTACTCGAGATGAATTATTAGAGAATGCAGGAGAGGTATTTGCTAATGTTGATAAAGGTACATTGCGGGTTCGAGTAAATCACACCTACCCATTGTCTGAAGCAGCACTTGCACATTCAGACCTCGAGAATAGGAAAACATCTGGATCTGTGGTACTTATCCCCTGA

Protein Analysis

362

Amino Acids

39.17

Weight (kDa)

9.29

Isoelectric Point (pI)

27.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 28 - 110 1.4e-14 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 152 - 224 6.5e-18 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 263 - 360 1.3e-09 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 494
AciI CCGC 2 cut(s) 142, 988
AclWI GGATC 9 cut(s) 292, 406, 419, 424, 456, 469, 793, 845, 1075
AcsI RAATTY 1 cut(s) 724
AcuI CTGAAG 1 cut(s) 1041
AfaI GTAC 3 cut(s) 438, 982, 1077
AfiI CCNNNNNNNGG 2 cut(s) 83, 148
AgsI TTSAA 2 cut(s) 632, 802
AhdI GACNNNNNGTC 1 cut(s) 41
AjnI CCWGG 5 cut(s) 87, 181, 220, 418, 896
AluBI AGCT 5 cut(s) 212, 295, 446, 869, 923
AluI AGCT 5 cut(s) 212, 295, 446, 869, 923
Alw21I GWGCWC 2 cut(s) 769, 847
Alw44I GTGCAC 1 cut(s) 843
AlwI GGATC 9 cut(s) 292, 406, 419, 424, 456, 469, 793, 845, 1075
AlwNI CAGNNNCTG 1 cut(s) 449
Ama87I CYCGRG 3 cut(s) 762, 927, 1046
AoxI GGCC 2 cut(s) 85, 899
ApaLI GTGCAC 1 cut(s) 843
ApeKI GCWGC 4 cut(s) 353, 443, 446, 1025
ApoI RAATTY 1 cut(s) 724
AseI ATTAAT 1 cut(s) 120
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 3 cut(s) 35, 85, 218
AsuHPI GGTGA 2 cut(s) 551, 832
AvaI CYCGRG 3 cut(s) 762, 927, 1046
AvaII GGWCC 2 cut(s) 35, 218
AxyI CCTNAGG 2 cut(s) 39, 78
BaeGI GKGCMC 1 cut(s) 847
BamHI GGATCC 2 cut(s) 411, 461
BanI GGYRCC 1 cut(s) 494
BanII GRGCYC 1 cut(s) 281
BarI GAAGNNNNNNTAC 2 cut(s) 663, 695
BauI CACGAG 1 cut(s) 597
BbsI GAAGAC 1 cut(s) 671
Bbv12I GWGCWC 2 cut(s) 769, 847
BbvI GCAGC 4 cut(s) 365, 433, 455, 1037
BccI CCATC 1 cut(s) 545
BciT130I CCWGG 5 cut(s) 89, 183, 222, 420, 898
BciVI GTATCC 2 cut(s) 652, 806
BfmI CTRYAG 1 cut(s) 648
BfuI GTATCC 2 cut(s) 652, 806
BisI GCNGC 4 cut(s) 354, 444, 447, 1026
BlsI GCNGC 4 cut(s) 355, 445, 448, 1027
Bme1390I CCNGG 5 cut(s) 89, 183, 222, 420, 898
Bme18I GGWCC 2 cut(s) 35, 218
BmeRI GACNNNNNGTC 1 cut(s) 41
BmeT110I CYCGRG 3 cut(s) 762, 927, 1046
BmgT120I GGNCC 3 cut(s) 35, 85, 218
BmiI GGNNCC 5 cut(s) 280, 413, 463, 496, 858
BmrFI CCNGG 5 cut(s) 89, 183, 222, 420, 898
BmsI GCATC 3 cut(s) 406, 542, 785
BpiI GAAGAC 1 cut(s) 671
BpmI CTGGAG 1 cut(s) 243
BpuEI CTTGAG 2 cut(s) 507, 522
BsaJI CCNNGG 2 cut(s) 181, 543
BsaWI WCCGGW 1 cut(s) 853
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 148
Bse1I ACTGG 1 cut(s) 475
Bse21I CCTNAGG 2 cut(s) 39, 78
Bse3DI GCAATG 3 cut(s) 279, 628, 983
BseBI CCWGG 5 cut(s) 89, 183, 222, 420, 898
BseDI CCNNGG 2 cut(s) 181, 543
BseGI GGATG 2 cut(s) 64, 177
BseLI CCNNNNNNNGG 2 cut(s) 83, 148
BseMI GCAATG 3 cut(s) 279, 628, 983
BseMII CTCAG 2 cut(s) 30, 782
BseNI ACTGG 1 cut(s) 475
BseSI GKGCMC 1 cut(s) 847
BseXI GCAGC 4 cut(s) 365, 433, 455, 1037
BshFI GGCC 2 cut(s) 87, 901
BshNI GGYRCC 1 cut(s) 494
BsiHKAI GWGCWC 2 cut(s) 769, 847
BsiHKCI CYCGRG 3 cut(s) 762, 927, 1046
BsiSI CCGG 1 cut(s) 854
BslI CCNNNNNNNGG 2 cut(s) 83, 148
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 2 cut(s) 87, 901
BsoBI CYCGRG 3 cut(s) 762, 927, 1046
Bsp1286I GDGCHC 3 cut(s) 281, 769, 847
Bsp143I GATC 8 cut(s) 297, 411, 429, 461, 738, 785, 850, 1067
BspACI CCGC 2 cut(s) 142, 988
BspANI GGCC 2 cut(s) 87, 901
BspCNI CTCAG 2 cut(s) 31, 783
BspHI TCATGA 1 cut(s) 45
BspLI GGNNCC 5 cut(s) 280, 413, 463, 496, 858
BspPI GGATC 9 cut(s) 292, 406, 419, 424, 456, 469, 793, 845, 1075
BspQI GCTCTTC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 494
BsrDI GCAATG 3 cut(s) 279, 628, 983
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 2 cut(s) 181, 543
BssMI GATC 8 cut(s) 297, 411, 429, 461, 738, 785, 850, 1067
BssSI CACGAG 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 543
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 5 cut(s) 89, 183, 222, 420, 898
Bst4CI ACNGT 4 cut(s) 349, 502, 514, 888
Bst6I CTCTTC 2 cut(s) 285, 914
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 3 cut(s) 39, 78, 791
BstEII GGTNACC 1 cut(s) 670
BstF5I GGATG 2 cut(s) 64, 177
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 8 cut(s) 300, 414, 432, 464, 741, 788, 853, 1070
BstMBI GATC 8 cut(s) 297, 411, 429, 461, 738, 785, 850, 1067
BstMWI GCNNNNNNNGC 4 cut(s) 269, 494, 539, 1031
BstNI CCWGG 5 cut(s) 89, 183, 222, 420, 898
BstNSI RCATGY 1 cut(s) 443
BstPI GGTNACC 1 cut(s) 670
BstSCI CCNGG 5 cut(s) 87, 181, 220, 418, 896
BstSFI CTRYAG 1 cut(s) 648
BstSLI GKGCMC 1 cut(s) 847
BstV1I GCAGC 4 cut(s) 365, 433, 455, 1037
BstV2I GAAGAC 1 cut(s) 671
BstX2I RGATCY 4 cut(s) 411, 461, 850, 1067
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 4 cut(s) 411, 461, 850, 1067
Bsu36I CCTNAGG 2 cut(s) 39, 78
BsuI GTATCC 2 cut(s) 652, 806
BsuRI GGCC 2 cut(s) 87, 901
BtsCI GGATG 2 cut(s) 64, 177
BtsIMutI CAGTG 5 cut(s) 482, 498, 788, 882, 884
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 45
CfoI GCGC 1 cut(s) 385
Cfr13I GGNCC 3 cut(s) 35, 85, 218
Csp6I GTAC 3 cut(s) 437, 981, 1076
CviAII CATG 5 cut(s) 29, 46, 440, 563, 817
CviQI GTAC 3 cut(s) 437, 981, 1076
DdeI CTNAG 3 cut(s) 39, 78, 791
DpnI GATC 8 cut(s) 299, 413, 431, 463, 740, 787, 852, 1069
DpnII GATC 8 cut(s) 297, 411, 429, 461, 738, 785, 850, 1067
DriI GACNNNNNGTC 1 cut(s) 41
Eam1104I CTCTTC 2 cut(s) 285, 914
Eam1105I GACNNNNNGTC 1 cut(s) 41
EarI CTCTTC 2 cut(s) 285, 914
Eco130I CCWWGG 1 cut(s) 543
Eco147I AGGCCT 1 cut(s) 901
Eco24I GRGCYC 1 cut(s) 281
Eco47I GGWCC 2 cut(s) 35, 218
Eco57I CTGAAG 1 cut(s) 1041
Eco81I CCTNAGG 2 cut(s) 39, 78
Eco88I CYCGRG 3 cut(s) 762, 927, 1046
Eco91I GGTNACC 1 cut(s) 670
EcoO65I GGTNACC 1 cut(s) 670
EcoRII CCWGG 5 cut(s) 87, 181, 220, 418, 896
EcoT14I CCWWGG 1 cut(s) 543
EcoT38I GRGCYC 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 543
FaeI CATG 5 cut(s) 32, 49, 443, 566, 820
FalI AAGNNNNNCTT 2 cut(s) 1014, 1046
FatI CATG 5 cut(s) 28, 45, 439, 562, 816
FauI CCCGC 1 cut(s) 981
Fnu4HI GCNGC 4 cut(s) 354, 444, 447, 1026
FokI GGATG 2 cut(s) 71, 164
FriOI GRGCYC 1 cut(s) 281
Fsp4HI GCNGC 4 cut(s) 354, 444, 447, 1026
GlaI GCGC 1 cut(s) 384
GluI GCNGC 4 cut(s) 354, 444, 447, 1026
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 2 cut(s) 87, 901
HapII CCGG 1 cut(s) 854
HhaI GCGC 1 cut(s) 385
Hin1II CATG 5 cut(s) 32, 49, 443, 566, 820
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HinfI GANTC 5 cut(s) 18, 341, 456, 644, 755
HpaII CCGG 1 cut(s) 854
HphI GGTGA 2 cut(s) 551, 832
Hpy166II GTNNAC 2 cut(s) 35, 845
Hpy188I TCNGA 5 cut(s) 461, 509, 754, 1021, 1042
Hpy188III TCNNGA 7 cut(s) 46, 409, 524, 892, 929, 1048, 1065
Hpy8I GTNNAC 2 cut(s) 35, 845
HpyAV CCTTC 4 cut(s) 311, 342, 523, 649
HpyCH4III ACNGT 4 cut(s) 349, 502, 514, 888
HpyCH4IV ACGT 2 cut(s) 662, 769
HpyCH4V TGCA 7 cut(s) 272, 353, 397, 443, 845, 950, 1034
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 494, 539, 1031
HpyF3I CTNAG 3 cut(s) 39, 78, 791
HpySE526I ACGT 2 cut(s) 662, 769
Hsp92II CATG 5 cut(s) 32, 49, 443, 566, 820
HspAI GCGC 1 cut(s) 383
Kzo9I GATC 8 cut(s) 297, 411, 429, 461, 738, 785, 850, 1067
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 4 cut(s) 365, 433, 455, 1037
LweI GCATC 3 cut(s) 406, 542, 785
MaeII ACGT 2 cut(s) 662, 769
MaeIII GTNAC 5 cut(s) 205, 557, 601, 670, 882
MalI GATC 8 cut(s) 299, 413, 431, 463, 740, 787, 852, 1069
MboI GATC 8 cut(s) 297, 411, 429, 461, 738, 785, 850, 1067
MboII GAAGA 5 cut(s) 112, 302, 560, 671, 901
MflI RGATCY 4 cut(s) 411, 461, 850, 1067
MhlI GDGCHC 3 cut(s) 281, 769, 847
MluCI AATT 4 cut(s) 121, 168, 724, 935
MlyI GAGTC 2 cut(s) 27, 465
MmeI TCCRAC 3 cut(s) 196, 223, 439
MseI TTAA 3 cut(s) 6, 120, 369
MslI CAYNNNNRTG 2 cut(s) 27, 793
MspA1I CMGCKG 2 cut(s) 212, 446
MspI CCGG 1 cut(s) 854
MspR9I CCNGG 5 cut(s) 89, 183, 222, 420, 898
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 5 cut(s) 89, 183, 222, 420, 898
MwoI GCNNNNNNNGC 4 cut(s) 269, 494, 539, 1031
NdeII GATC 8 cut(s) 297, 411, 429, 461, 738, 785, 850, 1067
NlaIII CATG 5 cut(s) 32, 49, 443, 566, 820
NlaIV GGNNCC 5 cut(s) 280, 413, 463, 496, 858
NmuCI GTSAC 4 cut(s) 205, 557, 601, 882
NspI RCATGY 1 cut(s) 443
PaeR7I CTCGAG 2 cut(s) 927, 1046
PagI TCATGA 1 cut(s) 45
PceI AGGCCT 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 285
PctI GAATGC 1 cut(s) 952
PfeI GAWTC 3 cut(s) 341, 644, 755
PkrI GCNGC 4 cut(s) 355, 445, 448, 1027
PleI GAGTC 2 cut(s) 26, 464
PpsI GAGTC 2 cut(s) 26, 464
PshBI ATTAAT 1 cut(s) 120
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 5 cut(s) 87, 181, 220, 418, 896
PspEI GGTNACC 1 cut(s) 670
PspGI CCWGG 5 cut(s) 87, 181, 220, 418, 896
PspN4I GGNNCC 5 cut(s) 280, 413, 463, 496, 858
PspPI GGNCC 3 cut(s) 35, 85, 218
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 4 cut(s) 411, 461, 850, 1067
PvuII CAGCTG 2 cut(s) 212, 446
RsaI GTAC 3 cut(s) 438, 982, 1077
RsaNI GTAC 3 cut(s) 437, 981, 1076
RseI CAYNNNNRTG 2 cut(s) 27, 793
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 3 cut(s) 6, 120, 369
SatI GCNGC 4 cut(s) 354, 444, 447, 1026
Sau3AI GATC 8 cut(s) 297, 411, 429, 461, 738, 785, 850, 1067
Sau96I GGNCC 3 cut(s) 35, 85, 218
SchI GAGTC 2 cut(s) 27, 465
ScrFI CCNGG 5 cut(s) 89, 183, 222, 420, 898
SduI GDGCHC 3 cut(s) 281, 769, 847
SfaNI GCATC 3 cut(s) 406, 542, 785
SfcI CTRYAG 1 cut(s) 648
Sfr274I CTCGAG 2 cut(s) 927, 1046
SinI GGWCC 2 cut(s) 35, 218
SlaI CTCGAG 2 cut(s) 927, 1046
SmiMI CAYNNNNRTG 2 cut(s) 27, 793
SmlI CTYRAG 4 cut(s) 522, 537, 927, 1046
SmoI CTYRAG 4 cut(s) 522, 537, 927, 1046
Sse9I AATT 4 cut(s) 121, 168, 724, 935
SseBI AGGCCT 1 cut(s) 901
SsiI CCGC 2 cut(s) 142, 988
StuI AGGCCT 1 cut(s) 901
StyD4I CCNGG 5 cut(s) 87, 181, 220, 418, 896
StyI CCWWGG 1 cut(s) 543
TaaI ACNGT 4 cut(s) 349, 502, 514, 888
TaiI ACGT 2 cut(s) 665, 772
TaqI TCGA 4 cut(s) 189, 928, 994, 1047
TasI AATT 4 cut(s) 121, 168, 724, 935
TfiI GAWTC 3 cut(s) 341, 644, 755
Tru1I TTAA 3 cut(s) 6, 120, 369
Tru9I TTAA 3 cut(s) 6, 120, 369
TscAI CASTG 5 cut(s) 482, 505, 795, 882, 891
TseFI GTSAC 4 cut(s) 205, 557, 601, 882
TseI GCWGC 4 cut(s) 353, 443, 446, 1025
Tsp45I GTSAC 4 cut(s) 205, 557, 601, 882
TspDTI ATGAA 5 cut(s) 62, 115, 153, 671, 948
TspRI CASTG 5 cut(s) 482, 505, 795, 882, 891
VneI GTGCAC 1 cut(s) 843
VpaK11BI GGWCC 2 cut(s) 35, 218
VspI ATTAAT 1 cut(s) 120
XapI RAATTY 1 cut(s) 724
XceI RCATGY 1 cut(s) 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XhoI CTCGAG 2 cut(s) 927, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.