Rroxscaffold_4G00293100

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
13381679 .. 13384622
2944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293100.1

Sequence Viewer

Length: 1125 bp
ATGGGTTCACTTGGAACAAGTTTCCAGTTGGTTCCACTAGTTTACACTGTTTCAATTTTCATCAAAACTACGCGGGTCAACTCTTCACTCAGAACCCAGAAATCACTAGTTAGAGCTCTTGCAACTCAAGCATCATCATCATCAGCTAAGATGGTCAAAGGCATTAGAGTCCATGAACATGGTGGACCTGAGGTCTTGAAATGGGAAGATGTGGAAGTAGGAGAGCCCAAGGAGGGCGAGGTTCGTGTGAAGAACAAGGCCATTGGGCTTAATTTCATCGATGTGTACTACCGCAAAGGGGTTTATAAGACTCCTTCAATTCCTTACATCCCAGGTGTTGAGGCTTGCGGAGTTGTGACAGCTGTGGGACCTGGACTAACTGGCAGGCAAGTTGGAGATGTTGTAGCCTTTGCTGGTGGTGCAATGGGCTCCTATGTGGAAGAGCAGATCCTTCCTGCTAACAAAGTTGTTCCTGTTCCTCCTTCCATTGAGCCTACTGTTGCCGCATCCCTCTTGCTTAAGGGCATGACAGCTCAGTTTCTACTGCGTCGTTGCTTCAAGGTGGAACCTGGACATACAGTCCTTGTTCATGCAGCAGCTGGTGGAGTTGGATCCCTTTTATGCCAGTGGGCTAATGCCCTTGGTGCCACTGTCATTGGAACTGTATCAACTAAAGAGAAGGCAGCTCAAGCCAAGGACGATGGCTGTCACCATGTCATAATCAATAAGGAAGAGGACTTTGTTGCTCGTGTGACTGAAATAACCTCTGGCAATGGGGTTGAAGTTGTCTACGATTCTGTTGGGAAGGATACGTTTGAGGGATCATTGATATGCTTGAAGTCTCGTGGATATATGGTGAGTTTTGGGCAGTCATCAGGTGCACCAGATCCGGTTCCATTATCAGCTCTTTCAGTGAAGTCACTGTTCTTGACCAGGCCTTCCCTTTTCCATTACACGGCTACTCGAGATGAATTGTTAGAGACTGCAGGAGAGGTATTTGCTAATGTTGATGCAGGTATATTGCGGGTTCGAGTAAATCACACCTACCCATTGTCTGAAGCAGCACTTGCACATTCAGACCTTGAGAATAGGAAAACATCTGGATCTGTTGTACTTATCCCCTGA

Protein Analysis

374

Amino Acids

39.7

Weight (kDa)

8.18

Isoelectric Point (pI)

30.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 78 - 160 1.2e-14 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 202 - 321 2.5e-24 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 235 - 372 4.6e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
Acc36I ACCTGC 1 cut(s) 1004
AccB1I GGYRCC 1 cut(s) 644
AccI GTMKAC 1 cut(s) 789
AccII CGCG 1 cut(s) 73
AciI CCGC 5 cut(s) 73, 292, 348, 504, 1024
AclWI GGATC 6 cut(s) 442, 606, 619, 829, 881, 1111
AcuI CTGAAG 1 cut(s) 1077
AfaI GTAC 2 cut(s) 287, 1113
AfiI CCNNNNNNNGG 3 cut(s) 233, 298, 955
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 6 cut(s) 54, 199, 318, 559, 782, 838
AhdI GACNNNNNGTC 2 cut(s) 191, 578
AhlI ACTAGT 2 cut(s) 37, 106
AjnI CCWGG 4 cut(s) 331, 370, 568, 932
AluBI AGCT 7 cut(s) 116, 146, 362, 533, 599, 686, 905
AluI AGCT 7 cut(s) 116, 146, 362, 533, 599, 686, 905
Alw21I GWGCWC 2 cut(s) 118, 883
Alw26I GTCTC 2 cut(s) 846, 974
Alw44I GTGCAC 1 cut(s) 879
AlwI GGATC 6 cut(s) 442, 606, 619, 829, 881, 1111
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 963
AoxI GGCC 2 cut(s) 258, 935
ApaLI GTGCAC 1 cut(s) 879
ApeKI GCWGC 4 cut(s) 593, 596, 683, 1061
AspS9I GGNCC 2 cut(s) 185, 368
AsuHPI GGTGA 2 cut(s) 701, 868
AvaI CYCGRG 1 cut(s) 963
AvaII GGWCC 2 cut(s) 185, 368
AxyI CCTNAGG 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 883
BamHI GGATCC 1 cut(s) 611
BanI GGYRCC 1 cut(s) 644
BanII GRGCYC 3 cut(s) 118, 228, 431
BauI CACGAG 2 cut(s) 747, 843
Bbv12I GWGCWC 2 cut(s) 118, 883
BbvI GCAGC 4 cut(s) 605, 608, 695, 1073
BccI CCATC 2 cut(s) 145, 695
BceAI ACGGC 1 cut(s) 972
BciT130I CCWGG 4 cut(s) 333, 372, 570, 934
BciVI GTATCC 1 cut(s) 802
BcoDI GTCTC 2 cut(s) 846, 974
BcuI ACTAGT 2 cut(s) 37, 106
BfaI CTAG 2 cut(s) 38, 107
BfmI CTRYAG 1 cut(s) 984
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 1 cut(s) 1004
BfuI GTATCC 1 cut(s) 802
BisI GCNGC 5 cut(s) 504, 594, 597, 684, 1062
BlsI GCNGC 5 cut(s) 505, 595, 598, 685, 1063
Bme1390I CCNGG 4 cut(s) 333, 372, 570, 934
Bme18I GGWCC 2 cut(s) 185, 368
BmeRI GACNNNNNGTC 2 cut(s) 191, 578
BmeT110I CYCGRG 1 cut(s) 963
BmgT120I GGNCC 2 cut(s) 185, 368
BmiI GGNNCC 7 cut(s) 33, 369, 430, 567, 613, 646, 894
BmrFI CCNGG 4 cut(s) 333, 372, 570, 934
BmsI GCATC 3 cut(s) 140, 515, 1000
BpuEI CTTGAG 3 cut(s) 111, 672, 1103
Bsa29I ATCGAT 1 cut(s) 279
BsaJI CCNNGG 4 cut(s) 228, 331, 640, 693
BsaWI WCCGGW 1 cut(s) 889
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 3 cut(s) 233, 298, 955
Bse1I ACTGG 3 cut(s) 25, 385, 625
Bse21I CCTNAGG 1 cut(s) 189
Bse3DI GCAATG 2 cut(s) 429, 778
BseBI CCWGG 4 cut(s) 333, 372, 570, 934
BseCI ATCGAT 1 cut(s) 279
BseDI CCNNGG 4 cut(s) 228, 331, 640, 693
BseGI GGATG 2 cut(s) 327, 506
BseLI CCNNNNNNNGG 3 cut(s) 233, 298, 955
BseMI GCAATG 2 cut(s) 429, 778
BseMII CTCAG 3 cut(s) 103, 180, 548
BseNI ACTGG 3 cut(s) 25, 385, 625
BseSI GKGCMC 1 cut(s) 883
BseXI GCAGC 4 cut(s) 605, 608, 695, 1073
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 260, 937
BshNI GGYRCC 1 cut(s) 644
BshVI ATCGAT 1 cut(s) 279
BsiHKAI GWGCWC 2 cut(s) 118, 883
BsiHKCI CYCGRG 1 cut(s) 963
BsiSI CCGG 1 cut(s) 890
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 3 cut(s) 233, 298, 955
BsmAI GTCTC 2 cut(s) 846, 974
BsmFI GGGAC 1 cut(s) 381
BsnI GGCC 2 cut(s) 260, 937
BsoBI CYCGRG 1 cut(s) 963
Bsp1286I GDGCHC 4 cut(s) 118, 228, 431, 883
Bsp143I GATC 5 cut(s) 447, 611, 821, 886, 1103
BspACI CCGC 5 cut(s) 73, 292, 348, 504, 1024
BspANI GGCC 2 cut(s) 260, 937
BspCNI CTCAG 3 cut(s) 102, 181, 547
BspDI ATCGAT 1 cut(s) 279
BspFNI CGCG 1 cut(s) 73
BspLI GGNNCC 7 cut(s) 33, 369, 430, 567, 613, 646, 894
BspMAI CTGCAG 1 cut(s) 988
BspMI ACCTGC 1 cut(s) 1004
BspPI GGATC 6 cut(s) 442, 606, 619, 829, 881, 1111
BspQI GCTCTTC 1 cut(s) 435
BspT107I GGYRCC 1 cut(s) 644
BspTI CTTAAG 1 cut(s) 518
BsrDI GCAATG 2 cut(s) 429, 778
BsrI ACTGG 3 cut(s) 25, 385, 625
BssECI CCNNGG 4 cut(s) 228, 331, 640, 693
BssMI GATC 5 cut(s) 447, 611, 821, 886, 1103
BssSI CACGAG 2 cut(s) 747, 843
BssT1I CCWWGG 3 cut(s) 228, 640, 693
Bst2BI CACGAG 2 cut(s) 747, 843
Bst2UI CCWGG 4 cut(s) 333, 372, 570, 934
Bst4CI ACNGT 6 cut(s) 49, 499, 580, 652, 664, 924
Bst6I CTCTTC 3 cut(s) 88, 435, 726
BstAFI CTTAAG 1 cut(s) 518
BstAPI GCANNNNNTGC 1 cut(s) 1067
BstC8I GCNNGC 2 cut(s) 346, 386
BstDEI CTNAG 4 cut(s) 89, 147, 189, 534
BstF5I GGATG 2 cut(s) 327, 506
BstFNI CGCG 1 cut(s) 73
BstKTI GATC 5 cut(s) 450, 614, 824, 889, 1106
BstMAI GTCTC 2 cut(s) 846, 974
BstMBI GATC 5 cut(s) 447, 611, 821, 886, 1103
BstMWI GCNNNNNNNGC 5 cut(s) 128, 419, 644, 689, 1067
BstNI CCWGG 4 cut(s) 333, 372, 570, 934
BstSCI CCNGG 4 cut(s) 331, 370, 568, 932
BstSFI CTRYAG 1 cut(s) 984
BstSLI GKGCMC 1 cut(s) 883
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 4 cut(s) 605, 608, 695, 1073
BstX2I RGATCY 4 cut(s) 447, 611, 886, 1103
BstXI CCANNNNNNTGG 1 cut(s) 179
BstYI RGATCY 4 cut(s) 447, 611, 886, 1103
Bsu15I ATCGAT 1 cut(s) 279
Bsu36I CCTNAGG 1 cut(s) 189
BsuI GTATCC 1 cut(s) 802
BsuRI GGCC 2 cut(s) 260, 937
BsuTUI ATCGAT 1 cut(s) 279
BtsCI GGATG 2 cut(s) 327, 506
BtsIMutI CAGTG 5 cut(s) 45, 632, 648, 918, 920
BveI ACCTGC 1 cut(s) 1004
Cac8I GCNNGC 2 cut(s) 346, 386
CaiI CAGNNNCTG 1 cut(s) 599
Cfr13I GGNCC 2 cut(s) 185, 368
ClaI ATCGAT 1 cut(s) 279
CseI GACGC 1 cut(s) 536
Csp6I GTAC 2 cut(s) 286, 1112
CspCI CAANNNNNGTGG 2 cut(s) 637, 672
CviAII CATG 5 cut(s) 173, 179, 526, 590, 713
CviQI GTAC 2 cut(s) 286, 1112
DdeI CTNAG 4 cut(s) 89, 147, 189, 534
DpnI GATC 5 cut(s) 449, 613, 823, 888, 1105
DpnII GATC 5 cut(s) 447, 611, 821, 886, 1103
DriI GACNNNNNGTC 2 cut(s) 191, 578
Eam1104I CTCTTC 3 cut(s) 88, 435, 726
Eam1105I GACNNNNNGTC 2 cut(s) 191, 578
EarI CTCTTC 3 cut(s) 88, 435, 726
Ecl136II GAGCTC 1 cut(s) 116
Eco130I CCWWGG 3 cut(s) 228, 640, 693
Eco147I AGGCCT 1 cut(s) 937
Eco24I GRGCYC 3 cut(s) 118, 228, 431
Eco47I GGWCC 2 cut(s) 185, 368
Eco53kI GAGCTC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 1077
Eco81I CCTNAGG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 963
EcoICRI GAGCTC 1 cut(s) 116
EcoO109I RGGNCCY 1 cut(s) 368
EcoRII CCWGG 4 cut(s) 331, 370, 568, 932
EcoT14I CCWWGG 3 cut(s) 228, 640, 693
EcoT38I GRGCYC 3 cut(s) 118, 228, 431
ErhI CCWWGG 3 cut(s) 228, 640, 693
FaeI CATG 5 cut(s) 176, 182, 529, 593, 716
FalI AAGNNNNNCTT 2 cut(s) 1050, 1082
FaqI GGGAC 1 cut(s) 381
FatI CATG 5 cut(s) 172, 178, 525, 589, 712
FauI CCCGC 2 cut(s) 66, 1017
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 5 cut(s) 504, 594, 597, 684, 1062
FokI GGATG 2 cut(s) 314, 493
FriOI GRGCYC 3 cut(s) 118, 228, 431
Fsp4HI GCNGC 5 cut(s) 504, 594, 597, 684, 1062
FspBI CTAG 2 cut(s) 38, 107
GluI GCNGC 5 cut(s) 504, 594, 597, 684, 1062
HaeIII GGCC 2 cut(s) 260, 937
HapII CCGG 1 cut(s) 890
HgaI GACGC 1 cut(s) 536
Hin1II CATG 5 cut(s) 176, 182, 529, 593, 716
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 3 cut(s) 168, 310, 794
HpaII CCGG 1 cut(s) 890
HphI GGTGA 2 cut(s) 701, 868
Hpy166II GTNNAC 7 cut(s) 8, 43, 79, 185, 286, 790, 881
Hpy188I TCNGA 3 cut(s) 92, 1057, 1078
Hpy188III TCNNGA 4 cut(s) 196, 928, 965, 1101
Hpy8I GTNNAC 7 cut(s) 8, 43, 79, 185, 286, 790, 881
Hpy99I CGWCG 1 cut(s) 552
HpyAV CCTTC 6 cut(s) 324, 461, 492, 673, 799, 948
HpyCH4III ACNGT 6 cut(s) 49, 499, 580, 652, 664, 924
HpyCH4IV ACGT 1 cut(s) 812
HpyCH4V TGCA 7 cut(s) 122, 422, 593, 881, 986, 1013, 1070
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 419, 644, 689, 1067
HpyF3I CTNAG 4 cut(s) 89, 147, 189, 534
HpySE526I ACGT 1 cut(s) 812
Hsp92II CATG 5 cut(s) 176, 182, 529, 593, 716
Kzo9I GATC 5 cut(s) 447, 611, 821, 886, 1103
LguI GCTCTTC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 434
Lsp1109I GCAGC 4 cut(s) 605, 608, 695, 1073
LweI GCATC 3 cut(s) 140, 515, 1000
MaeI CTAG 2 cut(s) 38, 107
MaeII ACGT 1 cut(s) 812
MaeIII GTNAC 4 cut(s) 355, 707, 751, 918
MalI GATC 5 cut(s) 449, 613, 823, 888, 1105
MboI GATC 5 cut(s) 447, 611, 821, 886, 1103
MboII GAAGA 5 cut(s) 75, 218, 262, 452, 743
MflI RGATCY 4 cut(s) 447, 611, 886, 1103
MhlI GDGCHC 4 cut(s) 118, 228, 431, 883
MluCI AATT 4 cut(s) 54, 271, 318, 971
MlyI GAGTC 2 cut(s) 177, 304
MmeI TCCRAC 2 cut(s) 373, 589
MseI TTAA 2 cut(s) 270, 519
MslI CAYNNNNRTG 3 cut(s) 177, 281, 829
MspA1I CMGCKG 2 cut(s) 362, 599
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 1 cut(s) 890
MspR9I CCNGG 4 cut(s) 333, 372, 570, 934
MvaI CCWGG 4 cut(s) 333, 372, 570, 934
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 5 cut(s) 128, 419, 644, 689, 1067
NdeII GATC 5 cut(s) 447, 611, 821, 886, 1103
NlaIII CATG 5 cut(s) 176, 182, 529, 593, 716
NlaIV GGNNCC 7 cut(s) 33, 369, 430, 567, 613, 646, 894
NmuCI GTSAC 4 cut(s) 355, 707, 751, 918
PaeR7I CTCGAG 1 cut(s) 963
PceI AGGCCT 1 cut(s) 937
PciSI GCTCTTC 1 cut(s) 435
PfeI GAWTC 1 cut(s) 794
PkrI GCNGC 5 cut(s) 505, 595, 598, 685, 1063
PleI GAGTC 2 cut(s) 176, 304
PpsI GAGTC 2 cut(s) 176, 304
PpuMI RGGWCCY 1 cut(s) 368
PsiI TTATAA 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 118
Psp5II RGGWCCY 1 cut(s) 368
Psp6I CCWGG 4 cut(s) 331, 370, 568, 932
PspGI CCWGG 4 cut(s) 331, 370, 568, 932
PspN4I GGNNCC 7 cut(s) 33, 369, 430, 567, 613, 646, 894
PspPI GGNCC 2 cut(s) 185, 368
PspPPI RGGWCCY 1 cut(s) 368
PstI CTGCAG 1 cut(s) 988
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 4 cut(s) 447, 611, 886, 1103
PvuII CAGCTG 2 cut(s) 362, 599
RsaI GTAC 2 cut(s) 287, 1113
RsaNI GTAC 2 cut(s) 286, 1112
RseI CAYNNNNRTG 3 cut(s) 177, 281, 829
SacI GAGCTC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 435
SaqAI TTAA 2 cut(s) 270, 519
SatI GCNGC 5 cut(s) 504, 594, 597, 684, 1062
Sau3AI GATC 5 cut(s) 447, 611, 821, 886, 1103
Sau96I GGNCC 2 cut(s) 185, 368
SchI GAGTC 2 cut(s) 177, 304
ScrFI CCNGG 4 cut(s) 333, 372, 570, 934
SduI GDGCHC 4 cut(s) 118, 228, 431, 883
SfaNI GCATC 3 cut(s) 140, 515, 1000
SfcI CTRYAG 1 cut(s) 984
Sfr274I CTCGAG 1 cut(s) 963
SinI GGWCC 2 cut(s) 185, 368
SlaI CTCGAG 1 cut(s) 963
SmiMI CAYNNNNRTG 3 cut(s) 177, 281, 829
SmlI CTYRAG 5 cut(s) 126, 518, 687, 963, 1082
SmoI CTYRAG 5 cut(s) 126, 518, 687, 963, 1082
SpeI ACTAGT 2 cut(s) 37, 106
Sse9I AATT 4 cut(s) 54, 271, 318, 971
SseBI AGGCCT 1 cut(s) 937
SsiI CCGC 5 cut(s) 73, 292, 348, 504, 1024
SspMI CTAG 2 cut(s) 38, 107
SstI GAGCTC 1 cut(s) 118
StuI AGGCCT 1 cut(s) 937
StyD4I CCNGG 4 cut(s) 331, 370, 568, 932
StyI CCWWGG 3 cut(s) 228, 640, 693
TaaI ACNGT 6 cut(s) 49, 499, 580, 652, 664, 924
TaiI ACGT 1 cut(s) 815
TaqI TCGA 3 cut(s) 279, 964, 1030
TasI AATT 4 cut(s) 54, 271, 318, 971
TatI WGTACW 2 cut(s) 285, 1111
TauI GCSGC 1 cut(s) 506
TfiI GAWTC 1 cut(s) 794
Tru1I TTAA 2 cut(s) 270, 519
Tru9I TTAA 2 cut(s) 270, 519
TscAI CASTG 5 cut(s) 52, 632, 655, 918, 927
TseFI GTSAC 4 cut(s) 355, 707, 751, 918
TseI GCWGC 4 cut(s) 593, 596, 683, 1061
Tsp45I GTSAC 4 cut(s) 355, 707, 751, 918
TspDTI ATGAA 5 cut(s) 49, 189, 265, 578, 984
TspRI CASTG 5 cut(s) 52, 632, 655, 918, 927
Vha464I CTTAAG 1 cut(s) 518
VneI GTGCAC 1 cut(s) 879
VpaK11BI GGWCC 2 cut(s) 185, 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 963
XmiI GTMKAC 1 cut(s) 789
XspI CTAG 2 cut(s) 38, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.