MD01G1180600.v1.1

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
27991803 .. 27995546
3744 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1180600.v1.1.491

Sequence Viewer

Length: 1203 bp
ATGGGTTTACTTCCAATTAGCATCCAGAACCGCGGTTTAAGTTTAACCCCTTTCTTAATCACAAGTCCACCGCCCTATTTCCAGTTGCTGTCGGCTCCAAAATTCACACATTTTTCACAGATTTCCGGCAACAATTTCATCAATTGTTTACCTTCCAGGACCCAGAGATCATCAGTAGCAGTTAGATCAGTTGCCACTGAAGCAGCAGCATCACCACCAGCAGCAAAGATGGTCAAAGCCATCCGAATCCATGAACATGGTGGCCCTGAGGTGTTGAAATGGGAAGATGTGGAAGTAGGGGAGCCAAAGGAGGGCGAGATTCGCGTCAAGAATGAGGCCATCGGGATTAATTTCATTGATGTGTACTACCGCAAGGGCCTTTATAAGGCTGCTACGCTTCCCTACACCCCAGGTGTCGAGGCTTGTGGAGTCGTGACAGCTGTGGGACCAGGTCTAACGGGCAGGCAAGTTGGAGATCTTGTAGCCTATGCTGGTCAGCAAATGGGCTCATATGCGCAAGAGCAGATCCTTCCTGCAAACAGAGCTGTGCCTGTTCCTCCTTCCATTGATCCTAAAGTTGCAGCCTCCCTCATGCTTAAGGGTACGACAGCTCAGTTTCTACTACGCCGCTGTTTCAAGGTCGAACCTGGACACACAGTCCTTGTTCATGCAGCAGCTGGTGGAGTTGGATCCCTTTTATGCCAGTGGGCTAATGCCCTTGGTGCGACTGTCATTGGGACTGTATCAACTAAAGAAAAGGCAGTTCAGGCCAAGGAGGATGGATGCCACCACGTCATAATATATAAGGACGAGGACTTTGTCGCTCGTGTGAAAGAAATAACATCCAACAATGGGGTTGAAGTTGTCTACGATTCTGTAGGGAAGGATACGTTTGAGGGATCACTGGAAGTCTTAAAACTTCGGGGATATATGGTGAATTTTGGGCAGTCATCAGGTGCGCCTGATCCGGTTCCATTATCAGCTATTGCAGCGAAATCACTCTTCTTGACTCGGCCTAGCCTCTTTCATTACGCTGCAACTCGAGAGGAATTGTTAGAGGCCGCAGGAGAGGTATTTGCTAATGTTGCATCGGGTATATTGCGGGTTCGAGTGAATCACTCCTACTCATTATCTGAAGCAGCACAGGCACACACAGACCTTGAGAACAGGAAAACATCTGGATCTATCGTTCTTATCCCCTAG

Protein Analysis

401

Amino Acids

42.74

Weight (kDa)

8.18

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 104 - 186 2.7e-14 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 228 - 337 4.9e-24 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 261 - 398 1.4e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 384
Acc16I TGCGCA 1 cut(s) 516
AccI GTMKAC 1 cut(s) 867
AccII CGCG 2 cut(s) 33, 324
AciI CCGC 7 cut(s) 31, 33, 71, 370, 628, 1062, 1102
AclWI GGATC 7 cut(s) 520, 563, 684, 697, 907, 959, 1189
AcsI RAATTY 2 cut(s) 101, 937
AcuI CTGAAG 2 cut(s) 219, 1155
AfaI GTAC 2 cut(s) 365, 604
AfiI CCNNNNNNNGG 3 cut(s) 311, 385, 852
AflII CTTAAG 1 cut(s) 596
AgsI TTSAA 3 cut(s) 277, 637, 860
AhdI GACNNNNNGTC 1 cut(s) 656
AjiI CACGTC 1 cut(s) 793
AjnI CCWGG 4 cut(s) 155, 409, 448, 646
AloI GAACNNNNNNTCC 1 cut(s) 1173
AluBI AGCT 5 cut(s) 440, 545, 611, 677, 983
AluI AGCT 5 cut(s) 440, 545, 611, 677, 983
AlwI GGATC 7 cut(s) 520, 563, 684, 697, 907, 959, 1189
AlwNI CAGNNNCTG 2 cut(s) 88, 677
Ama87I CYCGRG 1 cut(s) 1041
AoxI GGCC 6 cut(s) 262, 336, 376, 768, 1013, 1059
ApoI RAATTY 2 cut(s) 101, 937
ArsI GACNNNNNNTTYG 2 cut(s) 800, 832
AseI ATTAAT 1 cut(s) 348
AspLEI GCGC 2 cut(s) 517, 961
AspS9I GGNCC 4 cut(s) 159, 263, 376, 446
AsuHPI GGTGA 2 cut(s) 204, 946
AvaI CYCGRG 1 cut(s) 1041
AvaII GGWCC 2 cut(s) 159, 446
AxyI CCTNAGG 1 cut(s) 267
BamHI GGATCC 1 cut(s) 689
BanII GRGCYC 1 cut(s) 509
BauI CACGAG 1 cut(s) 825
BccI CCATC 4 cut(s) 223, 248, 347, 773
BciT130I CCWGG 4 cut(s) 157, 411, 450, 648
BciVI GTATCC 1 cut(s) 880
BfaI CTAG 2 cut(s) 1017, 1201
BfmI CTRYAG 1 cut(s) 876
BfrI CTTAAG 1 cut(s) 596
BfuI GTATCC 1 cut(s) 880
BglII AGATCT 1 cut(s) 475
Bme1390I CCNGG 4 cut(s) 157, 411, 450, 648
Bme18I GGWCC 2 cut(s) 159, 446
BmeRI GACNNNNNGTC 1 cut(s) 656
BmeT110I CYCGRG 1 cut(s) 1041
BmgBI CACGTC 1 cut(s) 793
BmgT120I GGNCC 4 cut(s) 159, 263, 376, 446
BmiI GGNNCC 6 cut(s) 96, 161, 303, 447, 691, 972
BmrFI CCNGG 4 cut(s) 157, 411, 450, 648
BmsI GCATC 4 cut(s) 30, 218, 773, 1097
BpuEI CTTGAG 1 cut(s) 1181
BsaJI CCNNGG 4 cut(s) 31, 409, 718, 771
BsaWI WCCGGW 1 cut(s) 967
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 385, 852
Bse1I ACTGG 3 cut(s) 82, 703, 909
Bse21I CCTNAGG 1 cut(s) 267
BseBI CCWGG 4 cut(s) 157, 411, 450, 648
BseDI CCNNGG 4 cut(s) 31, 409, 718, 771
BseGI GGATG 5 cut(s) 21, 240, 784, 788, 842
BseLI CCNNNNNNNGG 3 cut(s) 311, 385, 852
BseMII CTCAG 2 cut(s) 258, 626
BseNI ACTGG 3 cut(s) 82, 703, 909
Bsh1236I CGCG 2 cut(s) 33, 324
BshFI GGCC 6 cut(s) 264, 338, 378, 770, 1015, 1061
BsiHKCI CYCGRG 1 cut(s) 1041
BsiSI CCGG 2 cut(s) 126, 968
BslFI GGGAC 2 cut(s) 459, 751
BslI CCNNNNNNNGG 3 cut(s) 311, 385, 852
BsmFI GGGAC 2 cut(s) 459, 751
BsnI GGCC 6 cut(s) 264, 338, 378, 770, 1015, 1061
BsoBI CYCGRG 1 cut(s) 1041
Bsp1286I GDGCHC 1 cut(s) 509
Bsp143I GATC 9 cut(s) 167, 185, 475, 525, 568, 689, 899, 964, 1181
BspACI CCGC 7 cut(s) 31, 33, 71, 370, 628, 1062, 1102
BspANI GGCC 6 cut(s) 264, 338, 378, 770, 1015, 1061
BspCNI CTCAG 2 cut(s) 259, 625
BspFNI CGCG 2 cut(s) 33, 324
BspLI GGNNCC 6 cut(s) 96, 161, 303, 447, 691, 972
BspPI GGATC 7 cut(s) 520, 563, 684, 697, 907, 959, 1189
BspTI CTTAAG 1 cut(s) 596
BsrI ACTGG 3 cut(s) 82, 703, 909
BssECI CCNNGG 4 cut(s) 31, 409, 718, 771
BssMI GATC 9 cut(s) 167, 185, 475, 525, 568, 689, 899, 964, 1181
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 2 cut(s) 718, 771
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 4 cut(s) 157, 411, 450, 648
Bst4CI ACNGT 3 cut(s) 658, 730, 742
Bst6I CTCTTC 1 cut(s) 1007
BstAFI CTTAAG 1 cut(s) 596
BstC8I GCNNGC 1 cut(s) 464
BstDEI CTNAG 2 cut(s) 267, 612
BstDSI CCRYGG 1 cut(s) 31
BstENI CCTNNNNNAGG 1 cut(s) 383
BstF5I GGATG 5 cut(s) 21, 240, 784, 788, 842
BstFNI CGCG 2 cut(s) 33, 324
BstHHI GCGC 2 cut(s) 517, 961
BstKTI GATC 9 cut(s) 170, 188, 478, 528, 571, 692, 902, 967, 1184
BstMBI GATC 9 cut(s) 167, 185, 475, 525, 568, 689, 899, 964, 1181
BstMWI GCNNNNNNNGC 8 cut(s) 200, 321, 542, 722, 767, 989, 1085, 1145
BstNI CCWGG 4 cut(s) 157, 411, 450, 648
BstSCI CCNGG 4 cut(s) 155, 409, 448, 646
BstSFI CTRYAG 1 cut(s) 876
BstUI CGCG 2 cut(s) 33, 324
BstX2I RGATCY 4 cut(s) 475, 525, 689, 1181
BstXI CCANNNNNNTGG 1 cut(s) 257
BstYI RGATCY 4 cut(s) 475, 525, 689, 1181
Bsu36I CCTNAGG 1 cut(s) 267
BsuI GTATCC 1 cut(s) 880
BsuRI GGCC 6 cut(s) 264, 338, 378, 770, 1015, 1061
BtgI CCRYGG 1 cut(s) 31
BtrI CACGTC 1 cut(s) 793
BtsCI GGATG 5 cut(s) 21, 240, 784, 788, 842
BtsIMutI CAGTG 3 cut(s) 195, 710, 902
Cac8I GCNNGC 1 cut(s) 464
CaiI CAGNNNCTG 2 cut(s) 88, 677
CfoI GCGC 2 cut(s) 517, 961
Cfr13I GGNCC 4 cut(s) 159, 263, 376, 446
Cfr42I CCGCGG 1 cut(s) 34
CseI GACGC 1 cut(s) 313
CsiI ACCWGGT 1 cut(s) 448
Csp6I GTAC 2 cut(s) 364, 603
CviAII CATG 4 cut(s) 251, 257, 592, 668
CviQI GTAC 2 cut(s) 364, 603
DdeI CTNAG 2 cut(s) 267, 612
DpnI GATC 9 cut(s) 169, 187, 477, 527, 570, 691, 901, 966, 1183
DpnII GATC 9 cut(s) 167, 185, 475, 525, 568, 689, 899, 964, 1181
DriI GACNNNNNGTC 1 cut(s) 656
Eam1104I CTCTTC 1 cut(s) 1007
Eam1105I GACNNNNNGTC 1 cut(s) 656
EarI CTCTTC 1 cut(s) 1007
Eco130I CCWWGG 2 cut(s) 718, 771
Eco24I GRGCYC 1 cut(s) 509
Eco47I GGWCC 2 cut(s) 159, 446
Eco57I CTGAAG 2 cut(s) 219, 1155
Eco81I CCTNAGG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 1041
EcoNI CCTNNNNNAGG 1 cut(s) 383
EcoO109I RGGNCCY 2 cut(s) 159, 376
EcoRII CCWGG 4 cut(s) 155, 409, 448, 646
EcoT14I CCWWGG 2 cut(s) 718, 771
EcoT38I GRGCYC 1 cut(s) 509
ErhI CCWWGG 2 cut(s) 718, 771
FaeI CATG 4 cut(s) 254, 260, 595, 671
FaqI GGGAC 2 cut(s) 459, 751
FatI CATG 4 cut(s) 250, 256, 591, 667
FauI CCCGC 1 cut(s) 1095
FauNDI CATATG 1 cut(s) 511
FblI GTMKAC 1 cut(s) 867
FokI GGATG 5 cut(s) 8, 227, 791, 795, 829
FriOI GRGCYC 1 cut(s) 509
FspBI CTAG 2 cut(s) 1017, 1201
FspI TGCGCA 1 cut(s) 516
GlaI GCGC 2 cut(s) 516, 960
HaeIII GGCC 6 cut(s) 264, 338, 378, 770, 1015, 1061
HapII CCGG 2 cut(s) 126, 968
HgaI GACGC 1 cut(s) 313
HhaI GCGC 2 cut(s) 517, 961
Hin1II CATG 4 cut(s) 254, 260, 595, 671
Hin6I GCGC 2 cut(s) 515, 959
HinP1I GCGC 2 cut(s) 515, 959
HinfI GANTC 6 cut(s) 246, 319, 429, 872, 1009, 1114
HpaII CCGG 2 cut(s) 126, 968
HphI GGTGA 2 cut(s) 204, 946
Hpy166II GTNNAC 5 cut(s) 8, 68, 149, 364, 868
Hpy188I TCNGA 2 cut(s) 245, 1135
Hpy188III TCNNGA 7 cut(s) 25, 328, 343, 433, 1006, 1043, 1179
Hpy8I GTNNAC 5 cut(s) 8, 68, 149, 364, 868
HpyAV CCTTC 4 cut(s) 162, 539, 570, 877
HpyCH4III ACNGT 3 cut(s) 658, 730, 742
HpyCH4IV ACGT 2 cut(s) 792, 890
HpyCH4V TGCA 6 cut(s) 536, 581, 671, 989, 1037, 1088
HpyF10VI GCNNNNNNNGC 8 cut(s) 200, 321, 542, 722, 767, 989, 1085, 1145
HpyF3I CTNAG 2 cut(s) 267, 612
HpySE526I ACGT 2 cut(s) 792, 890
Hsp92II CATG 4 cut(s) 254, 260, 595, 671
HspAI GCGC 2 cut(s) 515, 959
KspI CCGCGG 1 cut(s) 34
Kzo9I GATC 9 cut(s) 167, 185, 475, 525, 568, 689, 899, 964, 1181
LmnI GCTCC 2 cut(s) 100, 301
LweI GCATC 4 cut(s) 30, 218, 773, 1097
MabI ACCWGGT 1 cut(s) 448
MaeI CTAG 2 cut(s) 1017, 1201
MaeII ACGT 2 cut(s) 792, 890
MaeIII GTNAC 1 cut(s) 433
MalI GATC 9 cut(s) 169, 187, 477, 527, 570, 691, 901, 966, 1183
MboI GATC 9 cut(s) 167, 185, 475, 525, 568, 689, 899, 964, 1181
MboII GAAGA 2 cut(s) 296, 994
MfeI CAATTG 1 cut(s) 142
MflI RGATCY 4 cut(s) 475, 525, 689, 1181
MhlI GDGCHC 1 cut(s) 509
MluCI AATT 7 cut(s) 15, 101, 133, 142, 349, 937, 1049
MlyI GAGTC 2 cut(s) 438, 1003
MmeI TCCRAC 3 cut(s) 451, 667, 870
MseI TTAA 6 cut(s) 38, 44, 56, 348, 597, 914
MslI CAYNNNNRTG 2 cut(s) 255, 359
MspA1I CMGCKG 4 cut(s) 33, 440, 630, 677
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 2 cut(s) 126, 968
MspR9I CCNGG 4 cut(s) 157, 411, 450, 648
MunI CAATTG 1 cut(s) 142
MvaI CCWGG 4 cut(s) 157, 411, 450, 648
MvnI CGCG 2 cut(s) 33, 324
MwoI GCNNNNNNNGC 8 cut(s) 200, 321, 542, 722, 767, 989, 1085, 1145
NdeI CATATG 1 cut(s) 511
NdeII GATC 9 cut(s) 167, 185, 475, 525, 568, 689, 899, 964, 1181
NlaIII CATG 4 cut(s) 254, 260, 595, 671
NlaIV GGNNCC 6 cut(s) 96, 161, 303, 447, 691, 972
NmeAIII GCCGAG 1 cut(s) 991
NmuCI GTSAC 1 cut(s) 433
NsbI TGCGCA 1 cut(s) 516
PaeR7I CTCGAG 1 cut(s) 1041
PfeI GAWTC 4 cut(s) 246, 319, 872, 1114
PflFI GACNNNGTC 2 cut(s) 450, 818
PfoI TCCNGGA 1 cut(s) 155
PleI GAGTC 2 cut(s) 437, 1003
PpsI GAGTC 2 cut(s) 437, 1003
PpuMI RGGWCCY 1 cut(s) 159
PshBI ATTAAT 1 cut(s) 348
PsiI TTATAA 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 4 cut(s) 155, 409, 448, 646
PspGI CCWGG 4 cut(s) 155, 409, 448, 646
PspN4I GGNNCC 6 cut(s) 96, 161, 303, 447, 691, 972
PspPI GGNCC 4 cut(s) 159, 263, 376, 446
PspPPI RGGWCCY 1 cut(s) 159
PstNI CAGNNNCTG 2 cut(s) 88, 677
PsuI RGATCY 4 cut(s) 475, 525, 689, 1181
PsyI GACNNNGTC 2 cut(s) 450, 818
PvuII CAGCTG 2 cut(s) 440, 677
RsaI GTAC 2 cut(s) 365, 604
RsaNI GTAC 2 cut(s) 364, 603
RseI CAYNNNNRTG 2 cut(s) 255, 359
SacII CCGCGG 1 cut(s) 34
SaqAI TTAA 6 cut(s) 38, 44, 56, 348, 597, 914
Sau3AI GATC 9 cut(s) 167, 185, 475, 525, 568, 689, 899, 964, 1181
Sau96I GGNCC 4 cut(s) 159, 263, 376, 446
SchI GAGTC 2 cut(s) 438, 1003
ScrFI CCNGG 4 cut(s) 157, 411, 450, 648
SduI GDGCHC 1 cut(s) 509
SexAI ACCWGGT 1 cut(s) 448
SfaNI GCATC 4 cut(s) 30, 218, 773, 1097
SfcI CTRYAG 1 cut(s) 876
Sfr274I CTCGAG 1 cut(s) 1041
Sfr303I CCGCGG 1 cut(s) 34
SgrBI CCGCGG 1 cut(s) 34
SinI GGWCC 2 cut(s) 159, 446
SlaI CTCGAG 1 cut(s) 1041
SmiMI CAYNNNNRTG 2 cut(s) 255, 359
SmlI CTYRAG 3 cut(s) 596, 1041, 1160
SmoI CTYRAG 3 cut(s) 596, 1041, 1160
Sse9I AATT 7 cut(s) 15, 101, 133, 142, 349, 937, 1049
SsiI CCGC 7 cut(s) 31, 33, 71, 370, 628, 1062, 1102
SspMI CTAG 2 cut(s) 1017, 1201
StyD4I CCNGG 4 cut(s) 155, 409, 448, 646
StyI CCWWGG 2 cut(s) 718, 771
TaaI ACNGT 3 cut(s) 658, 730, 742
TaiI ACGT 2 cut(s) 795, 893
TaqI TCGA 4 cut(s) 417, 642, 1042, 1108
TasI AATT 7 cut(s) 15, 101, 133, 142, 349, 937, 1049
TatI WGTACW 1 cut(s) 363
TauI GCSGC 2 cut(s) 630, 1064
TfiI GAWTC 4 cut(s) 246, 319, 872, 1114
Tru1I TTAA 6 cut(s) 38, 44, 56, 348, 597, 914
Tru9I TTAA 6 cut(s) 38, 44, 56, 348, 597, 914
TscAI CASTG 3 cut(s) 202, 710, 909
TseFI GTSAC 1 cut(s) 433
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 5 cut(s) 127, 267, 343, 656, 1016
TspRI CASTG 3 cut(s) 202, 710, 909
Tth111I GACNNNGTC 2 cut(s) 450, 818
Vha464I CTTAAG 1 cut(s) 596
VpaK11BI GGWCC 2 cut(s) 159, 446
VspI ATTAAT 1 cut(s) 348
XagI CCTNNNNNAGG 1 cut(s) 383
XapI RAATTY 2 cut(s) 101, 937
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 1041
XmiI GTMKAC 1 cut(s) 867
XspI CTAG 2 cut(s) 1017, 1201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.