Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002022.1

Orthogroup ID

OG0001661

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1189

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002022.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

gttgaacctggacacacagtccttgttcatgcagcagctggtggagtcggatcccttttatgccagtgggctaatgcccttggtgccactgtcattggaactgtatcgactaaagagaaggcagctcaagccaaggaagatggctgtcaccatgtcatagtctataaggaagaggactttgttgctcgtgtgactgaaataacatctgataatggagttgatgttgtctacgactctgtaggcaaggatacctttaagggatcattggcttgcttgaagactcgaggatacatggtcagtttcgggcaggcatcaggtagacctgaccctgttccattgtcagctcttgccgcaaagtcactcttcttgacaaggcctgcccttttccagtacactgcaactcgagacaaattgctagaggttgcaggagaggtatttgctaatgttgcatcaggtgtgttgcgggttcgagtaaatcacaagtactcattgtctcatgcagcacaagcacatgcagacttggagaataggaaaacatctggttcagctgttcttattccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003960 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009828 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016651 GO:0016655 GO:0017091 GO:0030312 GO:0032502 GO:0032989 GO:0033554 GO:0034599 GO:0040007 GO:0042221 GO:0042545 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055114 GO:0060560 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

187

Amino Acids

19.73

Weight (kDa)

7.9

Isoelectric Point (pI)

20.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61510 AT5G61510
fragaria_vesca	FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27140
malus_domestica	MD01G1178400.v1.1 MD01G1179500.v1.1 MD01G1180600.v1.1 MD07G1250800.v1.1 MD07G1251000.v1.1
prunus_persica	Prupe.2G133300_v2.0.a1 Prupe.2G133300_v2.0.a1 Prupe.2G274500_v2.0.a1 Prupe.2G274600_v2.0.a1
pyrus_communis	pycom01g18920 pycom01g19010 pycom01g19080 pycom07g22370
rosa_chinensis	RchiOBHm_Chr1g0363511 RchiOBHm_Chr1g0373931 RchiOBHm_Chr1g0373941
rosa_laevigata	RLG00000026793 RLG00000026794 RLG00000027560
rosa_multiflora	Rmu_sc0002022.1_g000001 Rmu_sc0002740.1_g000012 Rmu_sc0008820.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283890 Rroxscaffold_4G00293100
rosa_rugosa	Rorug01G0308000 Rorug01G0379800 Rorug01G0379900
rosa_samantha	Rh1AG316700 Rh1AG390100 Rh1AG390200 Rh1BG280100 Rh1BG354400 Rh1BG354500 Rh1CG296200 Rh1CG367500 Rh1CG367600 Rh1DG311300 Rh1DG385100 Rh1DG385200
rosa_wichuraiana	Rw1G028070 Rw1G034500 Rw1G034510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	83
AccI	GTMKAC	2 cut(s)	228, 319
AciI	CCGC	2 cut(s)	351, 463
AclWI	GGATC	3 cut(s)	45, 58, 268
AfaI	GTAC	2 cut(s)	392, 485
AgsI	TTSAA	2 cut(s)	5, 277
AhdI	GACNNNNNGTC	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	7
AluBI	AGCT	4 cut(s)	38, 125, 344, 548
AluI	AGCT	4 cut(s)	38, 125, 344, 548
Alw26I	GTCTC	2 cut(s)	399, 498
AlwI	GGATC	3 cut(s)	45, 58, 268
AlwNI	CAGNNNCTG	1 cut(s)	38
Ama87I	CYCGRG	2 cut(s)	282, 402
AoxI	GGCC	1 cut(s)	374
ApeKI	GCWGC	4 cut(s)	32, 35, 122, 500
AsuHPI	GGTGA	1 cut(s)	140
AvaI	CYCGRG	2 cut(s)	282, 402
BamHI	GGATCC	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	83
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	284
BbvI	GCAGC	4 cut(s)	44, 47, 134, 512
BccI	CCATC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	9
BciVI	GTATCC	2 cut(s)	241, 281
BcoDI	GTCTC	2 cut(s)	399, 498
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	237
BfuI	GTATCC	2 cut(s)	241, 281
BisI	GCNGC	5 cut(s)	33, 36, 123, 351, 501
BlsI	GCNGC	5 cut(s)	34, 37, 124, 352, 502
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	1 cut(s)	9
BmeRI	GACNNNNNGTC	1 cut(s)	17
BmeT110I	CYCGRG	2 cut(s)	282, 402
BmiI	GGNNCC	2 cut(s)	52, 85
BmrFI	CCNGG	1 cut(s)	9
BmsI	GCATC	2 cut(s)	320, 458
BpiI	GAAGAC	1 cut(s)	284
BpuEI	CTTGAG	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	79, 132
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bse1I	ACTGG	2 cut(s)	64, 388
BseBI	CCWGG	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	79, 132
BseNI	ACTGG	2 cut(s)	64, 388
BseXI	GCAGC	4 cut(s)	44, 47, 134, 512
BshFI	GGCC	1 cut(s)	376
BshNI	GGYRCC	1 cut(s)	83
BsiHKCI	CYCGRG	2 cut(s)	282, 402
BsmAI	GTCTC	2 cut(s)	399, 498
BsnI	GGCC	1 cut(s)	376
BsoBI	CYCGRG	2 cut(s)	282, 402
Bsp143I	GATC	2 cut(s)	50, 260
BspACI	CCGC	2 cut(s)	351, 463
BspANI	GGCC	1 cut(s)	376
BspLI	GGNNCC	2 cut(s)	52, 85
BspPI	GGATC	3 cut(s)	45, 58, 268
BspT107I	GGYRCC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	64, 388
BssECI	CCNNGG	2 cut(s)	79, 132
BssMI	GATC	2 cut(s)	50, 260
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	2 cut(s)	79, 132
Bst2BI	CACGAG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	9
Bst4CI	ACNGT	3 cut(s)	19, 91, 103
Bst6I	CTCTTC	2 cut(s)	165, 368
BstC8I	GCNNGC	3 cut(s)	271, 309, 378
BstKTI	GATC	2 cut(s)	53, 263
BstMAI	GTCTC	2 cut(s)	399, 498
BstMBI	GATC	2 cut(s)	50, 260
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 128, 350, 446, 506
BstNI	CCWGG	1 cut(s)	9
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	7
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	4 cut(s)	44, 47, 134, 512
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuI	GTATCC	2 cut(s)	241, 281
BsuRI	GGCC	1 cut(s)	376
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	3 cut(s)	71, 87, 393
Cac8I	GCNNGC	3 cut(s)	271, 309, 378
CaiI	CAGNNNCTG	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	391, 484
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	5 cut(s)	29, 152, 292, 497, 512
CviJI	RGCY	9 cut(s)	38, 71, 125, 131, 144, 269, 344, 376, 548
CviKI_1	RGCY	9 cut(s)	38, 71, 125, 131, 144, 269, 344, 376, 548
CviQI	GTAC	2 cut(s)	391, 484
DpnI	GATC	2 cut(s)	52, 262
DpnII	GATC	2 cut(s)	50, 260
DriI	GACNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	165, 368
Eam1105I	GACNNNNNGTC	1 cut(s)	17
EarI	CTCTTC	2 cut(s)	165, 368
Eco130I	CCWWGG	2 cut(s)	79, 132
Eco147I	AGGCCT	1 cut(s)	376
Eco88I	CYCGRG	2 cut(s)	282, 402
EcoRII	CCWGG	1 cut(s)	7
EcoT14I	CCWWGG	2 cut(s)	79, 132
ErhI	CCWWGG	2 cut(s)	79, 132
FaeI	CATG	5 cut(s)	32, 155, 295, 500, 515
FaiI	YATR	8 cut(s)	30, 61, 153, 158, 165, 293, 498, 513
FalI	AAGNNNNNCTT	4 cut(s)	236, 268, 347, 379
FatI	CATG	5 cut(s)	28, 151, 291, 496, 511
FauI	CCCGC	1 cut(s)	456
FblI	GTMKAC	2 cut(s)	228, 319
Fnu4HI	GCNGC	5 cut(s)	33, 36, 123, 351, 501
Fsp4HI	GCNGC	5 cut(s)	33, 36, 123, 351, 501
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	5 cut(s)	33, 36, 123, 351, 501
HaeIII	GGCC	1 cut(s)	376
Hin1II	CATG	5 cut(s)	32, 155, 295, 500, 515
HinfI	GANTC	3 cut(s)	45, 233, 280
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	3 cut(s)	229, 320, 393
Hpy188I	TCNGA	2 cut(s)	50, 208
Hpy188III	TCNNGA	2 cut(s)	367, 404
Hpy8I	GTNNAC	3 cut(s)	229, 320, 393
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	3 cut(s)	19, 91, 103
HpyCH4V	TGCA	6 cut(s)	32, 398, 425, 449, 500, 515
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 128, 350, 446, 506
Hsp92II	CATG	5 cut(s)	32, 155, 295, 500, 515
Kzo9I	GATC	2 cut(s)	50, 260
Lsp1109I	GCAGC	4 cut(s)	44, 47, 134, 512
LweI	GCATC	2 cut(s)	320, 458
MaeI	CTAG	1 cut(s)	416
MaeIII	GTNAC	3 cut(s)	146, 190, 357
MalI	GATC	2 cut(s)	52, 262
MboI	GATC	2 cut(s)	50, 260
MboII	GAAGA	4 cut(s)	149, 182, 289, 355
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	1 cut(s)	410
MlyI	GAGTC	3 cut(s)	54, 227, 274
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	4 cut(s)	166, 278, 412, 424
MseI	TTAA	2 cut(s)	255, 562
MspA1I	CMGCKG	2 cut(s)	38, 548
MspR9I	CCNGG	1 cut(s)	9
MvaI	CCWGG	1 cut(s)	9
MwoI	GCNNNNNNNGC	5 cut(s)	83, 128, 350, 446, 506
NdeII	GATC	2 cut(s)	50, 260
NlaIII	CATG	5 cut(s)	32, 155, 295, 500, 515
NlaIV	GGNNCC	2 cut(s)	52, 85
NmuCI	GTSAC	3 cut(s)	146, 190, 357
NspI	RCATGY	1 cut(s)	515
PaeR7I	CTCGAG	2 cut(s)	282, 402
PceI	AGGCCT	1 cut(s)	376
PkrI	GCNGC	5 cut(s)	34, 37, 124, 352, 502
PleI	GAGTC	3 cut(s)	53, 227, 274
PpsI	GAGTC	3 cut(s)	53, 227, 274
Psp6I	CCWGG	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	52, 85
PspXI	VCTCGAGB	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	50
PvuII	CAGCTG	2 cut(s)	38, 548
RsaI	GTAC	2 cut(s)	392, 485
RsaNI	GTAC	2 cut(s)	391, 484
SaqAI	TTAA	2 cut(s)	255, 562
SatI	GCNGC	5 cut(s)	33, 36, 123, 351, 501
Sau3AI	GATC	2 cut(s)	50, 260
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	3 cut(s)	54, 227, 274
ScrFI	CCNGG	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	320, 458
SfcI	CTRYAG	1 cut(s)	237
Sfr274I	CTCGAG	2 cut(s)	282, 402
SlaI	CTCGAG	2 cut(s)	282, 402
SmlI	CTYRAG	3 cut(s)	126, 282, 402
SmoI	CTYRAG	3 cut(s)	126, 282, 402
Sse9I	AATT	1 cut(s)	410
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	2 cut(s)	351, 463
SspMI	CTAG	1 cut(s)	416
StuI	AGGCCT	1 cut(s)	376
StyD4I	CCNGG	1 cut(s)	7
StyI	CCWWGG	2 cut(s)	79, 132
TaaI	ACNGT	3 cut(s)	19, 91, 103
TaqI	TCGA	4 cut(s)	107, 283, 403, 469
TasI	AATT	1 cut(s)	410
TatI	WGTACW	2 cut(s)	390, 483
TauI	GCSGC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	255, 562
Tru9I	TTAA	2 cut(s)	255, 562
TscAI	CASTG	3 cut(s)	71, 94, 400
TseFI	GTSAC	3 cut(s)	146, 190, 357
TseI	GCWGC	4 cut(s)	32, 35, 122, 500
Tsp45I	GTSAC	3 cut(s)	146, 190, 357
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	71, 94, 400
XceI	RCATGY	1 cut(s)	515
XhoI	CTCGAG	2 cut(s)	282, 402
XmiI	GTMKAC	2 cut(s)	228, 319
XspI	CTAG	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.