RchiOBHm_Chr1g0363511

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
54897693 .. 54900756
3064 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58826

Sequence Viewer

Length: 1122 bp
ATGGGTTCACTTGGAACAAGTTTCCAGTTGGTTCCACTAGTTCACACTGTTTCAATTTCCATCAAAAATAGGGTCAACTCTTCACTCAGAACCCATAAATCACTAGTTAGAGCTCTTGCAACTCAAGCATCATCATCAGCAGCTAAGATGGTCAAAGGCATTAGAGTCCATGAACATGGTGGACCTGAGGTCTTGAAATGGGAAGATGTGGAAGTAGGAGAGCCCAAGGAGGGCGAGGTCCGTGTGAAGAACAAGGCCATTGGGCTTAATTTCATCGATGTGTACTACCGCAAAGGGGTTTATAAGACTCCTTCAATTCCTTACATCCCAGGTGTCGAGGCTTGTGGAGTTGTGACGGCTGTGGGACCTGGACTAACCGGCAGGCAAGTTGGAGATGTTGTAGCCTTCGCTGGTGGTGCAATGGGCTCCTATGTGGAAGAGCAGATCCTTCCTGCTAACAAAGTTGTTCCTGTTCCTCCTTCCATTGAGCCTACTGTTGCCGCATCCCTCTTGCTTAAGGGCATGACAGCTCAGTTTCTACTGCGTCGTTGCTTCAAGGTGGAACCTGGACATACAGTCCTTGTTCATGCAGCAGCTGGTGGAGTCGGATCCCTTTTATGCCAGTGGGCTAACGCCCTTGGTGCCACTGTCATTGGAACTGTATCAACTAAAGAGAAGGCAGCTCAAGCCAAGGAAGATGGCTGTCACCATGTCATAATCTATAAGGAAGAGGACTTTGTTGCTCGTGTGACTGAAATAACATCTGGCAATGGGGTTGAAGTTGTCTACGATTCTGTTGGGAAGGATACGTTTGAGGGATCATTGATATGCTTGAAGTCTCGTGGATACATGGTGAGTTTTGGGCAGTCATCAGGTGCACCAGATCCGGTTCCATTATCAGCTCTTTCAGTGAAGTCACTGTTCTTGACCAGGCCTTCCCTTTTCCATTACACAGCTACTCGAGATGAATTGTTAGAGACTGCAGGAGAGGTATTTTCTAATGTTGATGCAGGTATATTGCGGGTTCGAGTAAATCACACCTACCCATTGTCTGAAGCAGCACTTGCACATTCAGACCTTGAGAATAGGAAAACATCTGGATCTGTTGTACTTATCCCCTGA

Protein Analysis

373

Amino Acids

39.6

Weight (kDa)

8.19

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 77 - 159 1.2e-14 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 201 - 320 3.3e-25 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 234 - 371 1.2e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
Acc36I ACCTGC 1 cut(s) 1001
AccB1I GGYRCC 1 cut(s) 641
AccI GTMKAC 1 cut(s) 786
AciI CCGC 3 cut(s) 289, 501, 1021
AclWI GGATC 6 cut(s) 439, 603, 616, 826, 878, 1108
AcuI CTGAAG 1 cut(s) 1074
AfaI GTAC 2 cut(s) 284, 1110
AfiI CCNNNNNNNGG 2 cut(s) 230, 295
AflII CTTAAG 1 cut(s) 515
AgsI TTSAA 6 cut(s) 54, 196, 315, 556, 779, 835
AhdI GACNNNNNGTC 2 cut(s) 188, 575
AhlI ACTAGT 2 cut(s) 37, 103
AjnI CCWGG 4 cut(s) 328, 367, 565, 929
AluBI AGCT 7 cut(s) 113, 143, 530, 596, 683, 902, 956
AluI AGCT 7 cut(s) 113, 143, 530, 596, 683, 902, 956
Alw21I GWGCWC 2 cut(s) 115, 880
Alw26I GTCTC 2 cut(s) 843, 971
Alw44I GTGCAC 1 cut(s) 876
AlwI GGATC 6 cut(s) 439, 603, 616, 826, 878, 1108
AlwNI CAGNNNCTG 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 960
AoxI GGCC 2 cut(s) 255, 932
ApaLI GTGCAC 1 cut(s) 876
ApeKI GCWGC 5 cut(s) 140, 590, 593, 680, 1058
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AspS9I GGNCC 3 cut(s) 182, 238, 365
AsuHPI GGTGA 2 cut(s) 698, 865
AvaI CYCGRG 1 cut(s) 960
AvaII GGWCC 3 cut(s) 182, 238, 365
AxyI CCTNAGG 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 880
BamHI GGATCC 1 cut(s) 608
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 3 cut(s) 115, 225, 428
BauI CACGAG 2 cut(s) 744, 840
Bbv12I GWGCWC 2 cut(s) 115, 880
BbvI GCAGC 5 cut(s) 152, 602, 605, 692, 1070
BccI CCATC 3 cut(s) 68, 142, 692
BceAI ACGGC 1 cut(s) 372
BciT130I CCWGG 4 cut(s) 330, 369, 567, 931
BciVI GTATCC 2 cut(s) 799, 839
BcoDI GTCTC 2 cut(s) 843, 971
BcuI ACTAGT 2 cut(s) 37, 103
BfaI CTAG 2 cut(s) 38, 104
BfmI CTRYAG 1 cut(s) 981
BfrI CTTAAG 1 cut(s) 515
BfuAI ACCTGC 1 cut(s) 1001
BfuI GTATCC 2 cut(s) 799, 839
BisI GCNGC 6 cut(s) 141, 501, 591, 594, 681, 1059
BlsI GCNGC 6 cut(s) 142, 502, 592, 595, 682, 1060
Bme1390I CCNGG 4 cut(s) 330, 369, 567, 931
Bme18I GGWCC 3 cut(s) 182, 238, 365
BmeRI GACNNNNNGTC 2 cut(s) 188, 575
BmeT110I CYCGRG 1 cut(s) 960
BmgT120I GGNCC 3 cut(s) 182, 238, 365
BmiI GGNNCC 7 cut(s) 33, 366, 427, 564, 610, 643, 891
BmrFI CCNGG 4 cut(s) 330, 369, 567, 931
BmsI GCATC 3 cut(s) 137, 512, 997
BpuEI CTTGAG 3 cut(s) 108, 669, 1100
Bsa29I ATCGAT 1 cut(s) 276
BsaJI CCNNGG 4 cut(s) 225, 328, 637, 690
BsaWI WCCGGW 1 cut(s) 886
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 295
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 2 cut(s) 25, 622
Bse21I CCTNAGG 1 cut(s) 186
Bse3DI GCAATG 2 cut(s) 426, 775
BseBI CCWGG 4 cut(s) 330, 369, 567, 931
BseCI ATCGAT 1 cut(s) 276
BseDI CCNNGG 4 cut(s) 225, 328, 637, 690
BseGI GGATG 2 cut(s) 324, 503
BseLI CCNNNNNNNGG 2 cut(s) 230, 295
BseMI GCAATG 2 cut(s) 426, 775
BseMII CTCAG 3 cut(s) 100, 177, 545
BseNI ACTGG 2 cut(s) 25, 622
BseSI GKGCMC 1 cut(s) 880
BseXI GCAGC 5 cut(s) 152, 602, 605, 692, 1070
BshFI GGCC 2 cut(s) 257, 934
BshNI GGYRCC 1 cut(s) 641
BshVI ATCGAT 1 cut(s) 276
BsiHKAI GWGCWC 2 cut(s) 115, 880
BsiHKCI CYCGRG 1 cut(s) 960
BsiSI CCGG 2 cut(s) 378, 887
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 2 cut(s) 230, 295
BsmAI GTCTC 2 cut(s) 843, 971
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 2 cut(s) 257, 934
BsoBI CYCGRG 1 cut(s) 960
Bsp1286I GDGCHC 4 cut(s) 115, 225, 428, 880
Bsp143I GATC 5 cut(s) 444, 608, 818, 883, 1100
BspACI CCGC 3 cut(s) 289, 501, 1021
BspANI GGCC 2 cut(s) 257, 934
BspCNI CTCAG 3 cut(s) 99, 178, 544
BspDI ATCGAT 1 cut(s) 276
BspLI GGNNCC 7 cut(s) 33, 366, 427, 564, 610, 643, 891
BspMAI CTGCAG 1 cut(s) 985
BspMI ACCTGC 1 cut(s) 1001
BspPI GGATC 6 cut(s) 439, 603, 616, 826, 878, 1108
BspQI GCTCTTC 1 cut(s) 432
BspT107I GGYRCC 1 cut(s) 641
BspTI CTTAAG 1 cut(s) 515
BsrDI GCAATG 2 cut(s) 426, 775
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 2 cut(s) 25, 622
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 4 cut(s) 225, 328, 637, 690
BssMI GATC 5 cut(s) 444, 608, 818, 883, 1100
BssSI CACGAG 2 cut(s) 744, 840
BssT1I CCWWGG 3 cut(s) 225, 637, 690
Bst2BI CACGAG 2 cut(s) 744, 840
Bst2UI CCWGG 4 cut(s) 330, 369, 567, 931
Bst4CI ACNGT 6 cut(s) 49, 496, 577, 649, 661, 921
Bst6I CTCTTC 3 cut(s) 85, 432, 723
BstAFI CTTAAG 1 cut(s) 515
BstAPI GCANNNNNTGC 1 cut(s) 1064
BstC8I GCNNGC 1 cut(s) 383
BstDEI CTNAG 4 cut(s) 86, 144, 186, 531
BstF5I GGATG 2 cut(s) 324, 503
BstKTI GATC 5 cut(s) 447, 611, 821, 886, 1103
BstMAI GTCTC 2 cut(s) 843, 971
BstMBI GATC 5 cut(s) 444, 608, 818, 883, 1100
BstMWI GCNNNNNNNGC 5 cut(s) 125, 416, 641, 686, 1064
BstNI CCWGG 4 cut(s) 330, 369, 567, 931
BstSCI CCNGG 4 cut(s) 328, 367, 565, 929
BstSFI CTRYAG 1 cut(s) 981
BstSLI GKGCMC 1 cut(s) 880
BstV1I GCAGC 5 cut(s) 152, 602, 605, 692, 1070
BstX2I RGATCY 4 cut(s) 444, 608, 883, 1100
BstXI CCANNNNNNTGG 1 cut(s) 176
BstYI RGATCY 4 cut(s) 444, 608, 883, 1100
Bsu15I ATCGAT 1 cut(s) 276
Bsu36I CCTNAGG 1 cut(s) 186
BsuI GTATCC 2 cut(s) 799, 839
BsuRI GGCC 2 cut(s) 257, 934
BsuTUI ATCGAT 1 cut(s) 276
BtsCI GGATG 2 cut(s) 324, 503
BtsIMutI CAGTG 5 cut(s) 45, 629, 645, 915, 917
BveI ACCTGC 1 cut(s) 1001
Cac8I GCNNGC 1 cut(s) 383
CaiI CAGNNNCTG 1 cut(s) 596
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 3 cut(s) 182, 238, 365
ClaI ATCGAT 1 cut(s) 276
CseI GACGC 1 cut(s) 533
Csp6I GTAC 2 cut(s) 283, 1109
CspCI CAANNNNNGTGG 2 cut(s) 634, 669
CviAII CATG 6 cut(s) 170, 176, 523, 587, 710, 850
CviQI GTAC 2 cut(s) 283, 1109
DdeI CTNAG 4 cut(s) 86, 144, 186, 531
DpnI GATC 5 cut(s) 446, 610, 820, 885, 1102
DpnII GATC 5 cut(s) 444, 608, 818, 883, 1100
DriI GACNNNNNGTC 2 cut(s) 188, 575
Eam1104I CTCTTC 3 cut(s) 85, 432, 723
Eam1105I GACNNNNNGTC 2 cut(s) 188, 575
EarI CTCTTC 3 cut(s) 85, 432, 723
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 3 cut(s) 225, 637, 690
Eco147I AGGCCT 1 cut(s) 934
Eco24I GRGCYC 3 cut(s) 115, 225, 428
Eco47I GGWCC 3 cut(s) 182, 238, 365
Eco53kI GAGCTC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 1074
Eco81I CCTNAGG 1 cut(s) 186
Eco88I CYCGRG 1 cut(s) 960
EcoICRI GAGCTC 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 4 cut(s) 328, 367, 565, 929
EcoT14I CCWWGG 3 cut(s) 225, 637, 690
EcoT38I GRGCYC 3 cut(s) 115, 225, 428
ErhI CCWWGG 3 cut(s) 225, 637, 690
FaeI CATG 6 cut(s) 173, 179, 526, 590, 713, 853
FalI AAGNNNNNCTT 2 cut(s) 1047, 1079
FaqI GGGAC 1 cut(s) 378
FatI CATG 6 cut(s) 169, 175, 522, 586, 709, 849
FauI CCCGC 1 cut(s) 1014
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 6 cut(s) 141, 501, 591, 594, 681, 1059
FokI GGATG 2 cut(s) 311, 490
FriOI GRGCYC 3 cut(s) 115, 225, 428
Fsp4HI GCNGC 6 cut(s) 141, 501, 591, 594, 681, 1059
FspBI CTAG 2 cut(s) 38, 104
GluI GCNGC 6 cut(s) 141, 501, 591, 594, 681, 1059
HaeIII GGCC 2 cut(s) 257, 934
HapII CCGG 2 cut(s) 378, 887
HgaI GACGC 1 cut(s) 533
Hin1II CATG 6 cut(s) 173, 179, 526, 590, 713, 853
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 4 cut(s) 165, 307, 603, 791
HpaII CCGG 2 cut(s) 378, 887
HphI GGTGA 2 cut(s) 698, 865
Hpy166II GTNNAC 7 cut(s) 8, 43, 76, 182, 283, 787, 878
Hpy188I TCNGA 4 cut(s) 89, 608, 1054, 1075
Hpy188III TCNNGA 4 cut(s) 193, 925, 962, 1098
Hpy8I GTNNAC 7 cut(s) 8, 43, 76, 182, 283, 787, 878
Hpy99I CGWCG 1 cut(s) 549
HpyAV CCTTC 7 cut(s) 321, 415, 458, 489, 670, 796, 945
HpyCH4III ACNGT 6 cut(s) 49, 496, 577, 649, 661, 921
HpyCH4IV ACGT 1 cut(s) 809
HpyCH4V TGCA 7 cut(s) 119, 419, 590, 878, 983, 1010, 1067
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 416, 641, 686, 1064
HpyF3I CTNAG 4 cut(s) 86, 144, 186, 531
HpySE526I ACGT 1 cut(s) 809
Hsp92II CATG 6 cut(s) 173, 179, 526, 590, 713, 853
Kzo9I GATC 5 cut(s) 444, 608, 818, 883, 1100
LguI GCTCTTC 1 cut(s) 432
LmnI GCTCC 1 cut(s) 431
Lsp1109I GCAGC 5 cut(s) 152, 602, 605, 692, 1070
LweI GCATC 3 cut(s) 137, 512, 997
MaeI CTAG 2 cut(s) 38, 104
MaeII ACGT 1 cut(s) 809
MaeIII GTNAC 4 cut(s) 352, 704, 748, 915
MalI GATC 5 cut(s) 446, 610, 820, 885, 1102
MboI GATC 5 cut(s) 444, 608, 818, 883, 1100
MboII GAAGA 6 cut(s) 72, 215, 259, 449, 707, 740
MflI RGATCY 4 cut(s) 444, 608, 883, 1100
MhlI GDGCHC 4 cut(s) 115, 225, 428, 880
MluCI AATT 4 cut(s) 54, 268, 315, 968
MlyI GAGTC 3 cut(s) 174, 301, 612
MmeI TCCRAC 2 cut(s) 370, 586
MnlI CCTC 9 cut(s) 181, 223, 229, 331, 486, 518, 724, 808, 982
MseI TTAA 2 cut(s) 267, 516
MslI CAYNNNNRTG 3 cut(s) 174, 278, 826
MspA1I CMGCKG 1 cut(s) 596
MspCI CTTAAG 1 cut(s) 515
MspI CCGG 2 cut(s) 378, 887
MspR9I CCNGG 4 cut(s) 330, 369, 567, 931
MvaI CCWGG 4 cut(s) 330, 369, 567, 931
MwoI GCNNNNNNNGC 5 cut(s) 125, 416, 641, 686, 1064
NdeII GATC 5 cut(s) 444, 608, 818, 883, 1100
NlaIII CATG 6 cut(s) 173, 179, 526, 590, 713, 853
NlaIV GGNNCC 7 cut(s) 33, 366, 427, 564, 610, 643, 891
NmuCI GTSAC 4 cut(s) 352, 704, 748, 915
PaeR7I CTCGAG 1 cut(s) 960
PceI AGGCCT 1 cut(s) 934
PciSI GCTCTTC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 791
PkrI GCNGC 6 cut(s) 142, 502, 592, 595, 682, 1060
PleI GAGTC 3 cut(s) 173, 301, 611
PpsI GAGTC 3 cut(s) 173, 301, 611
PpuMI RGGWCCY 1 cut(s) 365
PsiI TTATAA 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 115
Psp5II RGGWCCY 1 cut(s) 365
Psp6I CCWGG 4 cut(s) 328, 367, 565, 929
PspGI CCWGG 4 cut(s) 328, 367, 565, 929
PspN4I GGNNCC 7 cut(s) 33, 366, 427, 564, 610, 643, 891
PspPI GGNCC 3 cut(s) 182, 238, 365
PspPPI RGGWCCY 1 cut(s) 365
PstI CTGCAG 1 cut(s) 985
PstNI CAGNNNCTG 1 cut(s) 596
PsuI RGATCY 4 cut(s) 444, 608, 883, 1100
PvuII CAGCTG 1 cut(s) 596
RsaI GTAC 2 cut(s) 284, 1110
RsaNI GTAC 2 cut(s) 283, 1109
RseI CAYNNNNRTG 3 cut(s) 174, 278, 826
SacI GAGCTC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 432
SaqAI TTAA 2 cut(s) 267, 516
SatI GCNGC 6 cut(s) 141, 501, 591, 594, 681, 1059
Sau3AI GATC 5 cut(s) 444, 608, 818, 883, 1100
Sau96I GGNCC 3 cut(s) 182, 238, 365
SchI GAGTC 3 cut(s) 174, 301, 612
ScrFI CCNGG 4 cut(s) 330, 369, 567, 931
SduI GDGCHC 4 cut(s) 115, 225, 428, 880
SfaNI GCATC 3 cut(s) 137, 512, 997
SfcI CTRYAG 1 cut(s) 981
Sfr274I CTCGAG 1 cut(s) 960
SinI GGWCC 3 cut(s) 182, 238, 365
SlaI CTCGAG 1 cut(s) 960
SmiMI CAYNNNNRTG 3 cut(s) 174, 278, 826
SmlI CTYRAG 5 cut(s) 123, 515, 684, 960, 1079
SmoI CTYRAG 5 cut(s) 123, 515, 684, 960, 1079
SpeI ACTAGT 2 cut(s) 37, 103
Sse9I AATT 4 cut(s) 54, 268, 315, 968
SseBI AGGCCT 1 cut(s) 934
SsiI CCGC 3 cut(s) 289, 501, 1021
SspMI CTAG 2 cut(s) 38, 104
SstI GAGCTC 1 cut(s) 115
StuI AGGCCT 1 cut(s) 934
StyD4I CCNGG 4 cut(s) 328, 367, 565, 929
StyI CCWWGG 3 cut(s) 225, 637, 690
TaaI ACNGT 6 cut(s) 49, 496, 577, 649, 661, 921
TaiI ACGT 1 cut(s) 812
TaqI TCGA 4 cut(s) 276, 336, 961, 1027
TasI AATT 4 cut(s) 54, 268, 315, 968
TatI WGTACW 2 cut(s) 282, 1108
TauI GCSGC 1 cut(s) 503
TfiI GAWTC 1 cut(s) 791
Tru1I TTAA 2 cut(s) 267, 516
Tru9I TTAA 2 cut(s) 267, 516
TscAI CASTG 5 cut(s) 52, 629, 652, 915, 924
TseFI GTSAC 4 cut(s) 352, 704, 748, 915
TseI GCWGC 5 cut(s) 140, 590, 593, 680, 1058
Tsp45I GTSAC 4 cut(s) 352, 704, 748, 915
TspDTI ATGAA 4 cut(s) 186, 262, 575, 981
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 5 cut(s) 52, 629, 652, 915, 924
Vha464I CTTAAG 1 cut(s) 515
VneI GTGCAC 1 cut(s) 876
VpaK11BI GGWCC 3 cut(s) 182, 238, 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 176
XhoI CTCGAG 1 cut(s) 960
XmiI GTMKAC 1 cut(s) 786
XspI CTAG 2 cut(s) 38, 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.