Rorug01G0379800

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
49266478 .. 49269817
3340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0379800.1

Sequence Viewer

Length: 1782 bp
ATGGAGCTGCAAGAAGTCGAAAAGAGATTAAAAAGTGGAGGAGGAGAAACAAAAAGGGAGGAAGAGAATTTGGTTCATGATTCATCTATAGATTACAAAGGAACAGTTCCTCTACGTGCTTCAACAGGCGTTTGGAAAGCTTCTCTGTTTATCATCACTATTGAATTTAGTGAGAGGCTGAGTTACTTTGGAATAGCAACAAATCTCATCACATACCTCACCCAAGTGCTTCATCAAGACATCAAAACCGCAGCGAAAAATGTGAACTATTGGACAGGAGTGACGACAATCATGCCTTTAATCGGAGGGTTCTTAGCAGATGCCTACACTGGTCGATTCAACATGGTTATGTTTTCATCCCTCATATATCTAATGGGTCTGAGTCTCTTGACAATGTCGCAATTCATCCCAAGTCTAAAGCCTTGCAACACGAAGATATGTCGACAGCCTAGAAAGCTTCATGTAGTATTACTTTTTGTTGCCTTGTACTTCATCTCTGTTGGAACCGGAGGTCACAAGCCATGTCTTCAAAGCTTTGGTGCTGACCAATTCGATGATGATCACTTGGAAGAAAGAAAGAAGAAAATGTCTTTCTTCAACTGGTGGAACTTTGCACTTTGTTGTGGGCTGTTTCTTGGTGTAACTGTGATTGTTTATGTTCAGGACTCAGTGAGCTGGGGCGTAGCAGATCTTGTTCTCACAATCACCCTGGCTATTACAATAGTGACGTTTTATATGGGGAAGTATTGTTACCGTTATAGAGTAGCACAAGGAAGCCCTCTGAGACCCATGTTACAGGTCTTGGTTGCAGCCATTAGAAAAAGAAATTTGACCAATCCTCAAAACCCTGATCTGCTATTTGAAGTTCCCAAGTCAGAGAAGTACTCCCAAGGAAGGCTTCTACTTCACACAAATAGGCTCAGGTTTCTAGACAAGGCCGCAATAATTGAAGAGAATGAGAACTACCCATCTTGTGAACAGAAGCACAACCCTTGGAGATTGGCTACATTGACAAGAGTGGAGGAGTTGAAACTCATCTTGAGCATGATCCCCATTTGGCTCACCTCATTAACAAATGCAGTGTGTTTGGCACAAGCCCCGACCTTCTTTGTTAAACAAGCTGCTACAATGAACCGAAATATTACTAACAACTTCAAGATCCCACCAGCCACCATTTTCTCTCTTGGAGCCATTGCAATGCTAATCTCAGTCACTGTCTATGACAAAATTCTTGTTCCAGTTCTACGGAAAGCCACCGGAAATGAAAGGGGTATGAATATCCTCCATAGGATCGGATTTGGGATGATACTTACGGTGATGGCAATGTCCGTGGCAGCACTTGTTGAACGAAAAAGGCTAAGATATGCAGATCCACAAGCTATGAGTGTGTTCTGGTTAGCACCCCAGTACATAATTCTTGGTATAGGGGATGCATTTACTCTGGTCGGTTTGCAAGAGTATTTCTATGACCAAGTTCCTGACTCAATGAGAAGTTTAGGGGTTGCTTTGTACTTGAGTGTGATTGGGGTTGGGAGCTTCTTGAGCAGCTTTTTAATTATTGCTATAGATCATGTTACAGAGAAGGATGGGAGGAGTTGGTTTGGGAAGGACTTGAGTGGAAGCCGCTTGGACAATTTCTTCTGGCTTTTGGCAGCCATGAACGGGTTGAATTCATGTGTTTATGGGTATGTGGCTAGGGGTTATACCTACAAGAATGTGGAGAGGAGAGTGGTTTTGGGTGATAATTCTGTGACTAATGGAAATGATCAATCCATGGCTTAA

Protein Analysis

593

Amino Acids

66.73

Weight (kDa)

9.16

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 56 - 515 9.2e-13 Major Facilitator Superfamily
PTR2 PF00854 113 - 527 3.3e-86 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 442
AciI CCGC 3 cut(s) 249, 939, 1624
AclWI GGATC 4 cut(s) 1042, 1153, 1298, 1364
AcsI RAATTY 5 cut(s) 67, 164, 826, 1227, 1669
AfaI GTAC 4 cut(s) 488, 884, 1409, 1511
AfiI CCNNNNNNNGG 3 cut(s) 302, 894, 1662
AjnI CCWGG 1 cut(s) 708
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 9 cut(s) 7, 140, 457, 534, 675, 1121, 1379, 1536, 1548
AluI AGCT 9 cut(s) 7, 140, 457, 534, 675, 1121, 1379, 1536, 1548
Alw26I GTCTC 2 cut(s) 389, 778
AlwI GGATC 4 cut(s) 1042, 1153, 1298, 1364
AlwNI CAGNNNCTG 1 cut(s) 1214
AoxI GGCC 1 cut(s) 936
ApeKI GCWGC 7 cut(s) 7, 251, 809, 1121, 1334, 1545, 1652
ApoI RAATTY 5 cut(s) 67, 164, 826, 1227, 1669
AsuHPI GGTGA 5 cut(s) 211, 697, 1054, 1327, 1751
BarI GAAGNNNNNNTAC 2 cut(s) 734, 766
BbsI GAAGAC 1 cut(s) 518
BbvI GCAGC 6 cut(s) 263, 821, 1108, 1346, 1557, 1664
BccI CCATC 3 cut(s) 976, 1312, 1580
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 1 cut(s) 710
BclI TGATCA 2 cut(s) 559, 1765
BcoDI GTCTC 2 cut(s) 389, 778
BfaI CTAG 3 cut(s) 450, 929, 1695
BfmI CTRYAG 2 cut(s) 87, 1563
BglII AGATCT 1 cut(s) 688
BisI GCNGC 9 cut(s) 8, 252, 810, 939, 1122, 1335, 1546, 1624, 1653
BlsI GCNGC 9 cut(s) 9, 253, 811, 940, 1123, 1336, 1547, 1625, 1654
BmcAI AGTACT 1 cut(s) 884
Bme1390I CCNGG 1 cut(s) 710
BmiI GGNNCC 2 cut(s) 505, 1189
BmrFI CCNGG 1 cut(s) 710
BmrI ACTGGG 1 cut(s) 1399
BmsI GCATC 2 cut(s) 310, 1420
BmuI ACTGGG 1 cut(s) 1399
BpiI GAAGAC 1 cut(s) 518
BplI GAGNNNNNCTC 2 cut(s) 869, 901
Bpu10I CCTNAGC 1 cut(s) 920
BpuEI CTTGAG 4 cut(s) 1060, 1534, 1561, 1633
BsaAI YACGTR 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 778
BsaJI CCNNGG 5 cut(s) 708, 889, 992, 1329, 1773
BsaWI WCCGGW 2 cut(s) 506, 1256
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 894, 1662
Bse1I ACTGG 4 cut(s) 334, 605, 1238, 1405
Bse3DI GCAATG 3 cut(s) 1191, 1203, 1329
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 5 cut(s) 708, 889, 992, 1329, 1773
BseGI GGATG 5 cut(s) 356, 405, 1308, 1435, 1591
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 3 cut(s) 302, 894, 1662
BseMI GCAATG 3 cut(s) 1191, 1203, 1329
BseMII CTCAG 6 cut(s) 170, 371, 681, 773, 934, 1221
BseNI ACTGG 4 cut(s) 334, 605, 1238, 1405
BseRI GAGGAG 5 cut(s) 54, 57, 1037, 1606, 1738
BseXI GCAGC 6 cut(s) 263, 821, 1108, 1346, 1557, 1664
BseYI CCCAGC 1 cut(s) 675
BshFI GGCC 1 cut(s) 938
BsiSI CCGG 2 cut(s) 507, 1257
BslI CCNNNNNNNGG 3 cut(s) 302, 894, 1662
BsmAI GTCTC 2 cut(s) 389, 778
BsnI GGCC 1 cut(s) 938
Bso31I GGTCTC 1 cut(s) 778
Bsp143I GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1290, 1369, 1567, 1765
Bsp19I CCATGG 1 cut(s) 1773
BspACI CCGC 3 cut(s) 249, 939, 1624
BspANI GGCC 1 cut(s) 938
BspCNI CTCAG 6 cut(s) 171, 372, 680, 774, 933, 1220
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 505, 1189
BspPI GGATC 4 cut(s) 1042, 1153, 1298, 1364
BspTNI GGTCTC 1 cut(s) 778
BsrDI GCAATG 3 cut(s) 1191, 1203, 1329
BsrI ACTGG 4 cut(s) 334, 605, 1238, 1405
BssECI CCNNGG 5 cut(s) 708, 889, 992, 1329, 1773
BssMI GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1290, 1369, 1567, 1765
BssT1I CCWWGG 3 cut(s) 889, 992, 1773
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 5 cut(s) 106, 646, 755, 1216, 1315
Bst6I CTCTTC 2 cut(s) 57, 945
BstBAI YACGTR 1 cut(s) 116
BstDEI CTNAG 8 cut(s) 179, 313, 380, 667, 782, 920, 1207, 1358
BstDSI CCRYGG 2 cut(s) 1329, 1773
BstF5I GGATG 5 cut(s) 356, 405, 1308, 1435, 1591
BstKTI GATC 9 cut(s) 562, 691, 853, 1050, 1161, 1293, 1372, 1570, 1768
BstMAI GTCTC 2 cut(s) 389, 778
BstMBI GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1290, 1369, 1567, 1765
BstMWI GCNNNNNNNGC 2 cut(s) 454, 1542
BstNI CCWGG 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 708
BstSFI CTRYAG 2 cut(s) 87, 1563
BstV1I GCAGC 6 cut(s) 263, 821, 1108, 1346, 1557, 1664
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 3 cut(s) 688, 1158, 1369
BstYI RGATCY 3 cut(s) 688, 1158, 1369
BsuRI GGCC 1 cut(s) 938
BtgI CCRYGG 2 cut(s) 1329, 1773
BtsCI GGATG 5 cut(s) 356, 405, 1308, 1435, 1591
BtsI GCAGTG 1 cut(s) 1086
BtsIMutI CAGTG 4 cut(s) 327, 675, 1086, 1212
CaiI CAGNNNCTG 1 cut(s) 1214
CciI TCATGA 1 cut(s) 76
Csp6I GTAC 4 cut(s) 487, 883, 1408, 1510
CspCI CAANNNNNGTGG 2 cut(s) 1311, 1346
CviQI GTAC 4 cut(s) 487, 883, 1408, 1510
DdeI CTNAG 8 cut(s) 179, 313, 380, 667, 782, 920, 1207, 1358
DpnI GATC 9 cut(s) 561, 690, 852, 1049, 1160, 1292, 1371, 1569, 1767
DpnII GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1290, 1369, 1567, 1765
Eam1104I CTCTTC 2 cut(s) 57, 945
EarI CTCTTC 2 cut(s) 57, 945
Eco130I CCWWGG 3 cut(s) 889, 992, 1773
Eco31I GGTCTC 1 cut(s) 778
EcoRI GAATTC 1 cut(s) 1669
EcoRII CCWGG 1 cut(s) 708
EcoT14I CCWWGG 3 cut(s) 889, 992, 1773
EcoT22I ATGCAT 1 cut(s) 1435
ErhI CCWWGG 3 cut(s) 889, 992, 1773
FalI AAGNNNNNCTT 2 cut(s) 882, 914
FbaI TGATCA 2 cut(s) 559, 1765
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 9 cut(s) 8, 252, 810, 939, 1122, 1335, 1546, 1624, 1653
FokI GGATG 5 cut(s) 343, 392, 1315, 1442, 1598
Fsp4HI GCNGC 9 cut(s) 8, 252, 810, 939, 1122, 1335, 1546, 1624, 1653
FspBI CTAG 3 cut(s) 450, 929, 1695
GluI GCNGC 9 cut(s) 8, 252, 810, 939, 1122, 1335, 1546, 1624, 1653
GsaI CCCAGC 1 cut(s) 679
HaeIII GGCC 1 cut(s) 938
HapII CCGG 2 cut(s) 507, 1257
HincII GTYRAC 1 cut(s) 443
HindII GTYRAC 1 cut(s) 443
HindIII AAGCTT 3 cut(s) 138, 455, 532
HinfI GANTC 5 cut(s) 80, 336, 382, 665, 1481
HpaII CCGG 2 cut(s) 507, 1257
HphI GGTGA 5 cut(s) 211, 697, 1054, 1327, 1751
Hpy166II GTNNAC 3 cut(s) 265, 443, 977
Hpy188I TCNGA 5 cut(s) 305, 381, 783, 877, 1295
Hpy188III TCNNGA 9 cut(s) 77, 236, 388, 662, 929, 1039, 1156, 1478, 1540
Hpy8I GTNNAC 3 cut(s) 265, 443, 977
HpyAV CCTTC 4 cut(s) 888, 1114, 1576, 1600
HpyCH4III ACNGT 5 cut(s) 106, 646, 755, 1216, 1315
HpyCH4IV ACGT 2 cut(s) 115, 728
HpyCH4V TGCA 9 cut(s) 10, 426, 614, 809, 1079, 1196, 1367, 1433, 1453
HpyF10VI GCNNNNNNNGC 2 cut(s) 454, 1542
HpyF3I CTNAG 8 cut(s) 179, 313, 380, 667, 782, 920, 1207, 1358
HpySE526I ACGT 2 cut(s) 115, 728
Ksp22I TGATCA 2 cut(s) 559, 1765
Kzo9I GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1290, 1369, 1567, 1765
LmnI GCTCC 3 cut(s) 4, 1187, 1533
Lsp1109I GCAGC 6 cut(s) 263, 821, 1108, 1346, 1557, 1664
LweI GCATC 2 cut(s) 310, 1420
MaeI CTAG 3 cut(s) 450, 929, 1695
MaeII ACGT 2 cut(s) 115, 728
MalI GATC 9 cut(s) 561, 690, 852, 1049, 1160, 1292, 1371, 1569, 1767
MboI GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1290, 1369, 1567, 1765
MboII GAAGA 8 cut(s) 74, 445, 518, 581, 586, 592, 962, 1630
MflI RGATCY 3 cut(s) 688, 1158, 1369
MlyI GAGTC 3 cut(s) 391, 659, 1475
MmeI TCCRAC 1 cut(s) 481
Mph1103I ATGCAT 1 cut(s) 1435
MseI TTAA 6 cut(s) 29, 299, 1070, 1113, 1553, 1780
MslI CAYNNNNRTG 3 cut(s) 224, 347, 1196
MspI CCGG 2 cut(s) 507, 1257
MspR9I CCNGG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 2 cut(s) 454, 1542
NcoI CCATGG 1 cut(s) 1773
NdeII GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1290, 1369, 1567, 1765
NlaIV GGNNCC 2 cut(s) 505, 1189
NmuCI GTSAC 5 cut(s) 280, 512, 724, 1210, 1750
NsiI ATGCAT 1 cut(s) 1435
OliI CACNNNNGTG 1 cut(s) 224
PagI TCATGA 1 cut(s) 76
PfeI GAWTC 2 cut(s) 80, 336
PflFI GACNNNGTC 1 cut(s) 394
PkrI GCNGC 9 cut(s) 9, 253, 811, 940, 1123, 1336, 1547, 1625, 1654
PleI GAGTC 3 cut(s) 390, 659, 1475
PpsI GAGTC 3 cut(s) 390, 659, 1475
Ppu21I YACGTR 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 708
PspFI CCCAGC 1 cut(s) 675
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 2 cut(s) 505, 1189
PstNI CAGNNNCTG 1 cut(s) 1214
PsuI RGATCY 3 cut(s) 688, 1158, 1369
PsyI GACNNNGTC 1 cut(s) 394
RsaI GTAC 4 cut(s) 488, 884, 1409, 1511
RsaNI GTAC 4 cut(s) 487, 883, 1408, 1510
RseI CAYNNNNRTG 3 cut(s) 224, 347, 1196
SalI GTCGAC 1 cut(s) 441
SaqAI TTAA 6 cut(s) 29, 299, 1070, 1113, 1553, 1780
SatI GCNGC 9 cut(s) 8, 252, 810, 939, 1122, 1335, 1546, 1624, 1653
Sau3AI GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1290, 1369, 1567, 1765
ScaI AGTACT 1 cut(s) 884
SchI GAGTC 3 cut(s) 391, 659, 1475
ScrFI CCNGG 1 cut(s) 710
SfaNI GCATC 2 cut(s) 310, 1420
SfcI CTRYAG 2 cut(s) 87, 1563
SmiMI CAYNNNNRTG 3 cut(s) 224, 347, 1196
SmlI CTYRAG 4 cut(s) 1039, 1513, 1540, 1612
SmoI CTYRAG 4 cut(s) 1039, 1513, 1540, 1612
SsiI CCGC 3 cut(s) 249, 939, 1624
SspI AATATT 1 cut(s) 1141
SspMI CTAG 3 cut(s) 450, 929, 1695
StyD4I CCNGG 1 cut(s) 708
StyI CCWWGG 3 cut(s) 889, 992, 1773
TaaI ACNGT 5 cut(s) 106, 646, 755, 1216, 1315
TaiI ACGT 2 cut(s) 118, 731
TaqI TCGA 4 cut(s) 18, 334, 442, 552
TatI WGTACW 4 cut(s) 486, 882, 1407, 1509
TauI GCSGC 2 cut(s) 941, 1626
TfiI GAWTC 2 cut(s) 80, 336
Tru1I TTAA 6 cut(s) 29, 299, 1070, 1113, 1553, 1780
Tru9I TTAA 6 cut(s) 29, 299, 1070, 1113, 1553, 1780
TscAI CASTG 4 cut(s) 334, 675, 1086, 1219
TseFI GTSAC 5 cut(s) 280, 512, 724, 1210, 1750
TseI GCWGC 7 cut(s) 7, 251, 809, 1121, 1334, 1545, 1652
Tsp45I GTSAC 5 cut(s) 280, 512, 724, 1210, 1750
TspGWI ACGGA 2 cut(s) 1261, 1318
TspRI CASTG 4 cut(s) 334, 675, 1086, 1219
Tth111I GACNNNGTC 1 cut(s) 394
XapI RAATTY 5 cut(s) 67, 164, 826, 1227, 1669
XbaI TCTAGA 1 cut(s) 928
XmiI GTMKAC 1 cut(s) 442
XspI CTAG 3 cut(s) 450, 929, 1695
ZrmI AGTACT 1 cut(s) 884
Zsp2I ATGCAT 1 cut(s) 1435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.