Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001661

Physical Location & Seq

Genomic Coordinates Reverse (-)

17810703 .. 17811741

Gene Structure 1039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTATAAACCAAAACTGATTTCAGGTGTCGAGGCTTGTGGAGTCGTGACAGCTGTGGGACCAGGTCTAACGGGCAGGCAAGTTGGAGATCTTGTAGCCTATGCTGGTCAGCAAATGGGCTCATATGCGGAAGAGCAGATCCTTCCTGCAAACAGAGCTGTGCCTGTTCCTCCTTCCATCGATCCTAAAGTTGCAGCCTCCCTCATGCTTAAGGGTACGACAGCTCAGTTTCTACTACGCTGCTGTTTCAAGGTCGAACCTGGACACACAGTCCTTGTTCATGCAGCAGCTGGTGGAGTTGGATCCCTTTTATGCCAGTGGGCTAATGCCCTTGGTGCGACTGTCATTGGGACTGTATCAACTAAAGAAAAGGCAGCTCAGGCCAAGGAGGATGGATGCCACCACGTCATAATATACAAGGAAGAGGACTTTGTCACTCGTGTGAAAGAAATAACATCCAACAATGGGGTTGAAGTTGTCTACGATTCTGTTGGGAAGGATACGTTTGAGGGATCACTGGAAGTCTTAAAACTTCGGGGATACATGGTGAGTTTTGGGCAGTCATCTGGTGCGCCTGATCCAGTTCCATTATCAGCTATTGCAGCGAAATCACTCTTCTTGACTCGGCCTAGCCTCTTTCATTACGCTGTAACTCGAGAGGAATTGTTAGAGGCTGCAGGAGAGGTATTTGCTAATGTTGCATCGGGTATATTGCGGGTTCGAGTGAATCACACCTACTCATTATCTGAAGCAGCGCAGGCACACGCAGACCTTGAGAACAGGAAAACATCTGGATCTATCGTTCTTGTCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003960 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009828 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016651 GO:0016655 GO:0017091 GO:0030312 GO:0032502 GO:0032989 GO:0033554 GO:0034599 GO:0040007 GO:0042221 GO:0042545 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055114 GO:0060560 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

272

Amino Acids

28.59

Weight (kDa)

6.39

Isoelectric Point (pI)

33.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61510 AT5G61510
fragaria_vesca	FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27140
malus_domestica	MD01G1178400.v1.1 MD01G1179500.v1.1 MD01G1180600.v1.1 MD07G1250800.v1.1 MD07G1251000.v1.1
prunus_persica	Prupe.2G133300_v2.0.a1 Prupe.2G133300_v2.0.a1 Prupe.2G274500_v2.0.a1 Prupe.2G274600_v2.0.a1
pyrus_communis	pycom01g18920 pycom01g19010 pycom01g19080 pycom07g22370
rosa_chinensis	RchiOBHm_Chr1g0363511 RchiOBHm_Chr1g0373931 RchiOBHm_Chr1g0373941
rosa_laevigata	RLG00000026793 RLG00000026794 RLG00000027560
rosa_multiflora	Rmu_sc0002022.1_g000001 Rmu_sc0002740.1_g000012 Rmu_sc0008820.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283890 Rroxscaffold_4G00293100
rosa_rugosa	Rorug01G0308000 Rorug01G0379800 Rorug01G0379900
rosa_samantha	Rh1AG316700 Rh1AG390100 Rh1AG390200 Rh1BG280100 Rh1BG354400 Rh1BG354500 Rh1CG296200 Rh1CG367500 Rh1CG367600 Rh1DG311300 Rh1DG385100 Rh1DG385200
rosa_wichuraiana	Rw1G028070 Rw1G034500 Rw1G034510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	2 cut(s)	128, 715
AclWI	GGATC	7 cut(s)	133, 176, 297, 310, 520, 572, 802
AcuI	CTGAAG	1 cut(s)	768
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	465
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	250, 473
AhdI	GACNNNNNGTC	1 cut(s)	269
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	2 cut(s)	61, 259
AjuI	GAANNNNNNNTTGG	1 cut(s)	36
AleI	CACNNNNGTG	1 cut(s)	440
AloI	GAACNNNNNNTCC	1 cut(s)	786
AluBI	AGCT	6 cut(s)	53, 158, 224, 290, 377, 596
AluI	AGCT	6 cut(s)	53, 158, 224, 290, 377, 596
AlwI	GGATC	7 cut(s)	133, 176, 297, 310, 520, 572, 802
AlwNI	CAGNNNCTG	1 cut(s)	290
Ama87I	CYCGRG	1 cut(s)	654
AoxI	GGCC	2 cut(s)	381, 626
ApeKI	GCWGC	8 cut(s)	194, 240, 284, 287, 374, 602, 674, 752
AspLEI	GCGC	2 cut(s)	574, 757
AspS9I	GGNCC	1 cut(s)	59
AsuHPI	GGTGA	1 cut(s)	559
AvaI	CYCGRG	1 cut(s)	654
AvaII	GGWCC	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	302
BanII	GRGCYC	1 cut(s)	122
BauI	CACGAG	1 cut(s)	438
BbvI	GCAGC	8 cut(s)	206, 227, 296, 299, 386, 614, 661, 764
BccI	CCATC	2 cut(s)	185, 386
BciT130I	CCWGG	2 cut(s)	63, 261
BciVI	GTATCC	2 cut(s)	493, 533
BfaI	CTAG	2 cut(s)	630, 814
BfmI	CTRYAG	1 cut(s)	675
BfrI	CTTAAG	1 cut(s)	209
BfuI	GTATCC	2 cut(s)	493, 533
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	8 cut(s)	195, 241, 285, 288, 375, 603, 675, 753
BlsI	GCNGC	8 cut(s)	196, 242, 286, 289, 376, 604, 676, 754
Bme1390I	CCNGG	2 cut(s)	63, 261
Bme18I	GGWCC	1 cut(s)	59
BmeRI	GACNNNNNGTC	1 cut(s)	269
BmeT110I	CYCGRG	1 cut(s)	654
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	60, 304
BmrFI	CCNGG	2 cut(s)	63, 261
BmsI	GCATC	2 cut(s)	386, 710
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	794
Bsa29I	ATCGAT	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	331, 384
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bsc4I	CCNNNNNNNGG	1 cut(s)	465
Bse1I	ACTGG	3 cut(s)	316, 522, 581
BseBI	CCWGG	2 cut(s)	63, 261
BseCI	ATCGAT	1 cut(s)	180
BseDI	CCNNGG	2 cut(s)	331, 384
BseGI	GGATG	3 cut(s)	397, 401, 455
BseLI	CCNNNNNNNGG	1 cut(s)	465
BseMII	CTCAG	2 cut(s)	239, 392
BseNI	ACTGG	3 cut(s)	316, 522, 581
BseXI	GCAGC	8 cut(s)	206, 227, 296, 299, 386, 614, 661, 764
BshFI	GGCC	2 cut(s)	383, 628
BshVI	ATCGAT	1 cut(s)	180
BsiHKCI	CYCGRG	1 cut(s)	654
BslFI	GGGAC	3 cut(s)	72, 364, 794
BslI	CCNNNNNNNGG	1 cut(s)	465
BsmFI	GGGAC	3 cut(s)	72, 364, 794
BsnI	GGCC	2 cut(s)	383, 628
BsoBI	CYCGRG	1 cut(s)	654
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	7 cut(s)	88, 138, 181, 302, 512, 577, 794
BspACI	CCGC	2 cut(s)	128, 715
BspANI	GGCC	2 cut(s)	383, 628
BspCNI	CTCAG	2 cut(s)	238, 391
BspDI	ATCGAT	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	60, 304
BspMAI	CTGCAG	1 cut(s)	679
BspPI	GGATC	7 cut(s)	133, 176, 297, 310, 520, 572, 802
BspQI	GCTCTTC	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	209
BsrI	ACTGG	3 cut(s)	316, 522, 581
BssECI	CCNNGG	2 cut(s)	331, 384
BssMI	GATC	7 cut(s)	88, 138, 181, 302, 512, 577, 794
BssSI	CACGAG	1 cut(s)	438
BssT1I	CCWWGG	2 cut(s)	331, 384
Bst2BI	CACGAG	1 cut(s)	438
Bst2UI	CCWGG	2 cut(s)	63, 261
Bst4CI	ACNGT	3 cut(s)	271, 343, 355
Bst6I	CTCTTC	3 cut(s)	126, 417, 620
BstAFI	CTTAAG	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	77, 759
BstDEI	CTNAG	2 cut(s)	225, 378
BstF5I	GGATG	3 cut(s)	397, 401, 455
BstHHI	GCGC	2 cut(s)	574, 757
BstKTI	GATC	7 cut(s)	91, 141, 184, 305, 515, 580, 797
BstMBI	GATC	7 cut(s)	88, 138, 181, 302, 512, 577, 794
BstMWI	GCNNNNNNNGC	6 cut(s)	155, 335, 380, 602, 698, 758
BstNI	CCWGG	2 cut(s)	63, 261
BstSCI	CCNGG	2 cut(s)	61, 259
BstSFI	CTRYAG	1 cut(s)	675
BstV1I	GCAGC	8 cut(s)	206, 227, 296, 299, 386, 614, 661, 764
BstX2I	RGATCY	4 cut(s)	88, 138, 302, 794
BstYI	RGATCY	4 cut(s)	88, 138, 302, 794
Bsu15I	ATCGAT	1 cut(s)	180
BsuI	GTATCC	2 cut(s)	493, 533
BsuRI	GGCC	2 cut(s)	383, 628
BsuTUI	ATCGAT	1 cut(s)	180
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	3 cut(s)	397, 401, 455
BtsIMutI	CAGTG	2 cut(s)	323, 515
Cac8I	GCNNGC	2 cut(s)	77, 759
CaiI	CAGNNNCTG	1 cut(s)	290
CfoI	GCGC	2 cut(s)	574, 757
Cfr13I	GGNCC	1 cut(s)	59
ClaI	ATCGAT	1 cut(s)	180
CsiI	ACCWGGT	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	3 cut(s)	205, 281, 544
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	225, 378
DpnI	GATC	7 cut(s)	90, 140, 183, 304, 514, 579, 796
DpnII	GATC	7 cut(s)	88, 138, 181, 302, 512, 577, 794
DriI	GACNNNNNGTC	1 cut(s)	269
Eam1104I	CTCTTC	3 cut(s)	126, 417, 620
Eam1105I	GACNNNNNGTC	1 cut(s)	269
EarI	CTCTTC	3 cut(s)	126, 417, 620
Eco130I	CCWWGG	2 cut(s)	331, 384
Eco24I	GRGCYC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	768
Eco88I	CYCGRG	1 cut(s)	654
EcoRII	CCWGG	2 cut(s)	61, 259
EcoT14I	CCWWGG	2 cut(s)	331, 384
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	2 cut(s)	331, 384
FaeI	CATG	3 cut(s)	208, 284, 547
FaqI	GGGAC	3 cut(s)	72, 364, 794
FatI	CATG	3 cut(s)	204, 280, 543
FauI	CCCGC	1 cut(s)	708
FauNDI	CATATG	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	8 cut(s)	195, 241, 285, 288, 375, 603, 675, 753
FokI	GGATG	3 cut(s)	404, 408, 442
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	8 cut(s)	195, 241, 285, 288, 375, 603, 675, 753
FspBI	CTAG	2 cut(s)	630, 814
GlaI	GCGC	2 cut(s)	573, 756
GluI	GCNGC	8 cut(s)	195, 241, 285, 288, 375, 603, 675, 753
HaeIII	GGCC	2 cut(s)	383, 628
HhaI	GCGC	2 cut(s)	574, 757
Hin1II	CATG	3 cut(s)	208, 284, 547
Hin6I	GCGC	2 cut(s)	572, 755
HinP1I	GCGC	2 cut(s)	572, 755
HinfI	GANTC	4 cut(s)	42, 485, 622, 727
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	1 cut(s)	748
Hpy188III	TCNNGA	4 cut(s)	46, 619, 656, 792
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	3 cut(s)	152, 183, 490
HpyCH4III	ACNGT	3 cut(s)	271, 343, 355
HpyCH4IV	ACGT	2 cut(s)	405, 503
HpyCH4V	TGCA	6 cut(s)	149, 194, 284, 602, 677, 701
HpyF10VI	GCNNNNNNNGC	6 cut(s)	155, 335, 380, 602, 698, 758
HpyF3I	CTNAG	2 cut(s)	225, 378
HpySE526I	ACGT	2 cut(s)	405, 503
Hsp92II	CATG	3 cut(s)	208, 284, 547
HspAI	GCGC	2 cut(s)	572, 755
Kzo9I	GATC	7 cut(s)	88, 138, 181, 302, 512, 577, 794
LguI	GCTCTTC	1 cut(s)	126
Lsp1109I	GCAGC	8 cut(s)	206, 227, 296, 299, 386, 614, 661, 764
LweI	GCATC	2 cut(s)	386, 710
MabI	ACCWGGT	1 cut(s)	61
MaeI	CTAG	2 cut(s)	630, 814
MaeII	ACGT	2 cut(s)	405, 503
MaeIII	GTNAC	3 cut(s)	46, 433, 649
MalI	GATC	7 cut(s)	90, 140, 183, 304, 514, 579, 796
MboI	GATC	7 cut(s)	88, 138, 181, 302, 512, 577, 794
MboII	GAAGA	3 cut(s)	143, 434, 607
MflI	RGATCY	4 cut(s)	88, 138, 302, 794
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	1 cut(s)	662
MlyI	GAGTC	2 cut(s)	51, 616
MmeI	TCCRAC	3 cut(s)	64, 280, 483
MseI	TTAA	2 cut(s)	210, 527
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	2 cut(s)	53, 290
MspCI	CTTAAG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	63, 261
MvaI	CCWGG	2 cut(s)	63, 261
MwoI	GCNNNNNNNGC	6 cut(s)	155, 335, 380, 602, 698, 758
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	7 cut(s)	88, 138, 181, 302, 512, 577, 794
NlaIII	CATG	3 cut(s)	208, 284, 547
NlaIV	GGNNCC	2 cut(s)	60, 304
NmeAIII	GCCGAG	1 cut(s)	604
NmuCI	GTSAC	2 cut(s)	46, 433
OliI	CACNNNNGTG	1 cut(s)	440
PaeR7I	CTCGAG	1 cut(s)	654
PciSI	GCTCTTC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	485, 727
PflFI	GACNNNGTC	2 cut(s)	63, 431
PkrI	GCNGC	8 cut(s)	196, 242, 286, 289, 376, 604, 676, 754
PleI	GAGTC	2 cut(s)	50, 616
PpsI	GAGTC	2 cut(s)	50, 616
Psp6I	CCWGG	2 cut(s)	61, 259
PspGI	CCWGG	2 cut(s)	61, 259
PspN4I	GGNNCC	2 cut(s)	60, 304
PspPI	GGNCC	1 cut(s)	59
PstI	CTGCAG	1 cut(s)	679
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	4 cut(s)	88, 138, 302, 794
PsyI	GACNNNGTC	2 cut(s)	63, 431
PvuII	CAGCTG	2 cut(s)	53, 290
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	440
SapI	GCTCTTC	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	210, 527
SatI	GCNGC	8 cut(s)	195, 241, 285, 288, 375, 603, 675, 753
Sau3AI	GATC	7 cut(s)	88, 138, 181, 302, 512, 577, 794
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	2 cut(s)	51, 616
ScrFI	CCNGG	2 cut(s)	63, 261
SduI	GDGCHC	1 cut(s)	122
SexAI	ACCWGGT	1 cut(s)	61
SfaNI	GCATC	2 cut(s)	386, 710
SfcI	CTRYAG	1 cut(s)	675
Sfr274I	CTCGAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	654
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	3 cut(s)	209, 654, 773
SmoI	CTYRAG	3 cut(s)	209, 654, 773
Sse9I	AATT	1 cut(s)	662
SsiI	CCGC	2 cut(s)	128, 715
SspMI	CTAG	2 cut(s)	630, 814
StyD4I	CCNGG	2 cut(s)	61, 259
StyI	CCWWGG	2 cut(s)	331, 384
TaaI	ACNGT	3 cut(s)	271, 343, 355
TaiI	ACGT	2 cut(s)	408, 506
TaqI	TCGA	5 cut(s)	30, 180, 255, 655, 721
TasI	AATT	1 cut(s)	662
TfiI	GAWTC	2 cut(s)	485, 727
Tru1I	TTAA	2 cut(s)	210, 527
Tru9I	TTAA	2 cut(s)	210, 527
TscAI	CASTG	2 cut(s)	323, 522
TseFI	GTSAC	2 cut(s)	46, 433
TseI	GCWGC	8 cut(s)	194, 240, 284, 287, 374, 602, 674, 752
Tsp45I	GTSAC	2 cut(s)	46, 433
TspDTI	ATGAA	2 cut(s)	269, 629
TspRI	CASTG	2 cut(s)	323, 522
Tth111I	GACNNNGTC	2 cut(s)	63, 431
Vha464I	CTTAAG	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	480
XspI	CTAG	2 cut(s)	630, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.