Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001661

Physical Location & Seq

Genomic Coordinates Forward (+)

6091331 .. 6094134

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026794

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGTCAAGGCTATTCAAATCCATGAACTTGGTGGACCTGAGGTATTGAAATGGGAAGATGTCAAAATAGGAGAGCCGAAGGAGGGTGAGATTCGTGTGAAGAACAAGGCTATTGGGATTAATTTCATTGATGTGTACTTCCGCAAAGGGCTTTATTACAAGGCTGATACAATGCCCTTCATCCCAGGTATGGAGGCTTGTGGAGTTGTGACAGCGGTTGGACCTGGACTAACAGGGAGGCAAGTTGGAGATCTTGTCGCGTATATCGGTACACCGATGGGCTCATATGCAGAAGAGCAGATCCTTCCTGCAAACAAAGTTGTTCCTGTTCCTCCTTCCATTGATCCTATTGTTGCAGCATCCGTCATGCTTAAGGGTATGACAGCTCAGGTTCTACTACGCCAATGTTTCAAGGTTGAACCTGGACACACAGTCCTTGTTCATGCAGCAGCTGGTGGAGTCGGATCCCTTTTATGCCAGTGGGCTAATGCCCTTGGTGCCACTGTCATTGGAACTGTATCGACTAAAGAGAAGGCAGCTCAAGCCAAGGAAGATGGCTGTCACCATGTCATAATCTATAAGGAAGAGGACTTTGTTGCTCGTGCGACTGAAATAACATCTGATAATGGAGTTGATGTTGTCTACGACTCTGTAGGCAAGGATACCTTTCAGGGATCATTGGCTTGCTTGAAGACTCGAGGATACATGGTCAGTTTTGGGCAGGCATCAGGCAGACCTGACCCTGTTCCATTGTCAGCTCTTGCCGCAAAGTCACTCTTCTTGACAAGGCCTGCCCTTTTCCAGTACACTGCAACTCGAGACAAATTGCTAGAGGCTGCAGGAGAGGTATTTGCTAATGTTGCATCAGGTGTGTTGCGGGTTCGAGTAAATCACAAGTACTCATTGTCTCATGCAGCACAAGCACATGCAGACTTGGAGAATAGGAGAACATCTGGTTCAGCTGTTCTTATTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003960 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009828 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016651 GO:0016655 GO:0017091 GO:0030312 GO:0032502 GO:0032989 GO:0033554 GO:0034599 GO:0040007 GO:0042221 GO:0042545 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055114 GO:0060560 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

326

Amino Acids

34.63

Weight (kDa)

7.66

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	28 - 111	1.2e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	153 - 261	1e-25	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	186 - 323	9.9e-21	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61510 AT5G61510
fragaria_vesca	FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27140
malus_domestica	MD01G1178400.v1.1 MD01G1179500.v1.1 MD01G1180600.v1.1 MD07G1250800.v1.1 MD07G1251000.v1.1
prunus_persica	Prupe.2G133300_v2.0.a1 Prupe.2G133300_v2.0.a1 Prupe.2G274500_v2.0.a1 Prupe.2G274600_v2.0.a1
pyrus_communis	pycom01g18920 pycom01g19010 pycom01g19080 pycom07g22370
rosa_chinensis	RchiOBHm_Chr1g0363511 RchiOBHm_Chr1g0373931 RchiOBHm_Chr1g0373941
rosa_laevigata	RLG00000026793 RLG00000026794 RLG00000027560
rosa_multiflora	Rmu_sc0002022.1_g000001 Rmu_sc0002740.1_g000012 Rmu_sc0008820.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283890 Rroxscaffold_4G00293100
rosa_rugosa	Rorug01G0308000 Rorug01G0379800 Rorug01G0379900
rosa_samantha	Rh1AG316700 Rh1AG390100 Rh1AG390200 Rh1BG280100 Rh1BG354400 Rh1BG354500 Rh1CG296200 Rh1CG367500 Rh1CG367600 Rh1DG311300 Rh1DG385100 Rh1DG385200
rosa_wichuraiana	Rw1G028070 Rw1G034500 Rw1G034510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	497
AccI	GTMKAC	1 cut(s)	642
AccII	CGCG	1 cut(s)	260
AciI	CCGC	4 cut(s)	142, 215, 765, 877
AclWI	GGATC	5 cut(s)	295, 338, 459, 472, 682
AfaI	GTAC	4 cut(s)	137, 271, 806, 899
AfiI	CCNNNNNNNGG	2 cut(s)	83, 190
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	17, 49, 412, 419, 691
AhdI	GACNNNNNGTC	1 cut(s)	431
AjnI	CCWGG	3 cut(s)	184, 223, 421
AluBI	AGCT	5 cut(s)	386, 452, 539, 758, 962
AluI	AGCT	5 cut(s)	386, 452, 539, 758, 962
Alw26I	GTCTC	2 cut(s)	813, 912
AlwI	GGATC	5 cut(s)	295, 338, 459, 472, 682
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	2 cut(s)	696, 816
AoxI	GGCC	1 cut(s)	788
ApeKI	GCWGC	6 cut(s)	356, 446, 449, 536, 836, 914
AseI	ATTAAT	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	35, 221
AsuHPI	GGTGA	2 cut(s)	98, 554
AvaI	CYCGRG	2 cut(s)	696, 816
AvaII	GGWCC	2 cut(s)	35, 221
AxyI	CCTNAGG	1 cut(s)	39
BamHI	GGATCC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	284
BauI	CACGAG	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	698
BbvI	GCAGC	6 cut(s)	368, 458, 461, 548, 823, 926
BccI	CCATC	2 cut(s)	271, 548
BciT130I	CCWGG	3 cut(s)	186, 225, 423
BciVI	GTATCC	2 cut(s)	655, 695
BcoDI	GTCTC	2 cut(s)	813, 912
BfaI	CTAG	1 cut(s)	830
BfmI	CTRYAG	2 cut(s)	651, 837
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	2 cut(s)	655, 695
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	7 cut(s)	357, 447, 450, 537, 765, 837, 915
BlsI	GCNGC	7 cut(s)	358, 448, 451, 538, 766, 838, 916
BmcAI	AGTACT	1 cut(s)	899
Bme1390I	CCNGG	3 cut(s)	186, 225, 423
Bme18I	GGWCC	2 cut(s)	35, 221
BmeRI	GACNNNNNGTC	1 cut(s)	431
BmeT110I	CYCGRG	2 cut(s)	696, 816
BmgT120I	GGNCC	2 cut(s)	35, 221
BmiI	GGNNCC	2 cut(s)	466, 499
BmrFI	CCNGG	3 cut(s)	186, 225, 423
BmsI	GCATC	3 cut(s)	368, 734, 872
BpiI	GAAGAC	1 cut(s)	698
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	525
BsaJI	CCNNGG	3 cut(s)	184, 493, 546
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 621, 651
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 190
Bse1I	ACTGG	2 cut(s)	478, 802
Bse21I	CCTNAGG	1 cut(s)	39
BseBI	CCWGG	3 cut(s)	186, 225, 423
BseDI	CCNNGG	3 cut(s)	184, 493, 546
BseGI	GGATG	2 cut(s)	180, 359
BseLI	CCNNNNNNNGG	2 cut(s)	83, 190
BseMII	CTCAG	2 cut(s)	30, 401
BseNI	ACTGG	2 cut(s)	478, 802
BseXI	GCAGC	6 cut(s)	368, 458, 461, 548, 823, 926
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	1 cut(s)	790
BshNI	GGYRCC	1 cut(s)	497
BsiHKCI	CYCGRG	2 cut(s)	696, 816
BslI	CCNNNNNNNGG	2 cut(s)	83, 190
BsmAI	GTCTC	2 cut(s)	813, 912
BsnI	GGCC	1 cut(s)	790
BsoBI	CYCGRG	2 cut(s)	696, 816
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	5 cut(s)	250, 300, 343, 464, 674
BspACI	CCGC	4 cut(s)	142, 215, 765, 877
BspANI	GGCC	1 cut(s)	790
BspCNI	CTCAG	2 cut(s)	31, 400
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	2 cut(s)	466, 499
BspMAI	CTGCAG	1 cut(s)	841
BspPI	GGATC	5 cut(s)	295, 338, 459, 472, 682
BspQI	GCTCTTC	1 cut(s)	288
BspT107I	GGYRCC	1 cut(s)	497
BspTI	CTTAAG	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	478, 802
BssECI	CCNNGG	3 cut(s)	184, 493, 546
BssMI	GATC	5 cut(s)	250, 300, 343, 464, 674
BssSI	CACGAG	1 cut(s)	600
BssT1I	CCWWGG	2 cut(s)	493, 546
Bst2BI	CACGAG	1 cut(s)	600
Bst2UI	CCWGG	3 cut(s)	186, 225, 423
Bst4CI	ACNGT	3 cut(s)	433, 505, 517
Bst6I	CTCTTC	3 cut(s)	288, 579, 782
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	685, 723, 792
BstDEI	CTNAG	2 cut(s)	39, 387
BstF5I	GGATG	2 cut(s)	180, 359
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	5 cut(s)	253, 303, 346, 467, 677
BstMAI	GTCTC	2 cut(s)	813, 912
BstMBI	GATC	5 cut(s)	250, 300, 343, 464, 674
BstMWI	GCNNNNNNNGC	5 cut(s)	497, 542, 764, 860, 920
BstNI	CCWGG	3 cut(s)	186, 225, 423
BstNSI	RCATGY	1 cut(s)	929
BstSCI	CCNGG	3 cut(s)	184, 223, 421
BstSFI	CTRYAG	2 cut(s)	651, 837
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	6 cut(s)	368, 458, 461, 548, 823, 926
BstV2I	GAAGAC	1 cut(s)	698
BstX2I	RGATCY	3 cut(s)	250, 300, 464
BstXI	CCANNNNNNTGG	1 cut(s)	29
BstYI	RGATCY	3 cut(s)	250, 300, 464
Bsu36I	CCTNAGG	1 cut(s)	39
BsuI	GTATCC	2 cut(s)	655, 695
BsuRI	GGCC	1 cut(s)	790
BtsCI	GGATG	2 cut(s)	180, 359
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	3 cut(s)	485, 501, 807
Cac8I	GCNNGC	3 cut(s)	685, 723, 792
CaiI	CAGNNNCTG	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	35, 221
Csp6I	GTAC	4 cut(s)	136, 270, 805, 898
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	7 cut(s)	23, 367, 443, 566, 706, 911, 926
CviQI	GTAC	4 cut(s)	136, 270, 805, 898
DdeI	CTNAG	2 cut(s)	39, 387
DpnI	GATC	5 cut(s)	252, 302, 345, 466, 676
DpnII	GATC	5 cut(s)	250, 300, 343, 464, 674
DriI	GACNNNNNGTC	1 cut(s)	431
Eam1104I	CTCTTC	3 cut(s)	288, 579, 782
Eam1105I	GACNNNNNGTC	1 cut(s)	431
EarI	CTCTTC	3 cut(s)	288, 579, 782
Eco130I	CCWWGG	2 cut(s)	493, 546
Eco147I	AGGCCT	1 cut(s)	790
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	35, 221
Eco81I	CCTNAGG	1 cut(s)	39
Eco88I	CYCGRG	2 cut(s)	696, 816
EcoRII	CCWGG	3 cut(s)	184, 223, 421
EcoT14I	CCWWGG	2 cut(s)	493, 546
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	2 cut(s)	493, 546
FaeI	CATG	7 cut(s)	26, 370, 446, 569, 709, 914, 929
FalI	AAGNNNNNCTT	4 cut(s)	650, 682, 761, 793
FatI	CATG	7 cut(s)	22, 366, 442, 565, 705, 910, 925
FauI	CCCGC	1 cut(s)	870
FauNDI	CATATG	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	642
Fnu4HI	GCNGC	7 cut(s)	357, 447, 450, 537, 765, 837, 915
FokI	GGATG	2 cut(s)	167, 346
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	7 cut(s)	357, 447, 450, 537, 765, 837, 915
FspBI	CTAG	1 cut(s)	830
GluI	GCNGC	7 cut(s)	357, 447, 450, 537, 765, 837, 915
HaeIII	GGCC	1 cut(s)	790
Hin1II	CATG	7 cut(s)	26, 370, 446, 569, 709, 914, 929
HinfI	GANTC	4 cut(s)	91, 459, 647, 694
HphI	GGTGA	2 cut(s)	98, 554
Hpy166II	GTNNAC	5 cut(s)	35, 136, 272, 643, 807
Hpy188I	TCNGA	2 cut(s)	464, 622
Hpy188III	TCNNGA	2 cut(s)	781, 818
Hpy8I	GTNNAC	5 cut(s)	35, 136, 272, 643, 807
HpyAV	CCTTC	5 cut(s)	73, 187, 314, 345, 526
HpyCH4III	ACNGT	3 cut(s)	433, 505, 517
HpyCH4V	TGCA	9 cut(s)	290, 311, 356, 446, 812, 839, 863, 914, 929
HpyF10VI	GCNNNNNNNGC	5 cut(s)	497, 542, 764, 860, 920
HpyF3I	CTNAG	2 cut(s)	39, 387
Hsp92II	CATG	7 cut(s)	26, 370, 446, 569, 709, 914, 929
Kzo9I	GATC	5 cut(s)	250, 300, 343, 464, 674
LguI	GCTCTTC	1 cut(s)	288
Lsp1109I	GCAGC	6 cut(s)	368, 458, 461, 548, 823, 926
LweI	GCATC	3 cut(s)	368, 734, 872
MaeI	CTAG	1 cut(s)	830
MaeIII	GTNAC	3 cut(s)	208, 560, 771
MalI	GATC	5 cut(s)	252, 302, 345, 466, 676
MboI	GATC	5 cut(s)	250, 300, 343, 464, 674
MboII	GAAGA	7 cut(s)	68, 112, 305, 563, 596, 703, 769
MflI	RGATCY	3 cut(s)	250, 300, 464
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	2 cut(s)	121, 824
MlyI	GAGTC	3 cut(s)	468, 641, 688
MmeI	TCCRAC	3 cut(s)	199, 226, 442
MnlI	CCTC	9 cut(s)	34, 76, 187, 231, 342, 580, 692, 826, 838
MseI	TTAA	2 cut(s)	120, 372
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	3 cut(s)	215, 452, 962
MspCI	CTTAAG	1 cut(s)	371
MspR9I	CCNGG	3 cut(s)	186, 225, 423
MvaI	CCWGG	3 cut(s)	186, 225, 423
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	5 cut(s)	497, 542, 764, 860, 920
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	5 cut(s)	250, 300, 343, 464, 674
NlaIII	CATG	7 cut(s)	26, 370, 446, 569, 709, 914, 929
NlaIV	GGNNCC	2 cut(s)	466, 499
NmuCI	GTSAC	3 cut(s)	208, 560, 771
NspI	RCATGY	1 cut(s)	929
PaeR7I	CTCGAG	2 cut(s)	696, 816
PceI	AGGCCT	1 cut(s)	790
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	7 cut(s)	358, 448, 451, 538, 766, 838, 916
PleI	GAGTC	3 cut(s)	467, 641, 688
PpsI	GAGTC	3 cut(s)	467, 641, 688
PshBI	ATTAAT	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	184, 223, 421
PspGI	CCWGG	3 cut(s)	184, 223, 421
PspN4I	GGNNCC	2 cut(s)	466, 499
PspPI	GGNCC	2 cut(s)	35, 221
PspXI	VCTCGAGB	1 cut(s)	696
PstI	CTGCAG	1 cut(s)	841
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	3 cut(s)	250, 300, 464
PvuII	CAGCTG	2 cut(s)	452, 962
RsaI	GTAC	4 cut(s)	137, 271, 806, 899
RsaNI	GTAC	4 cut(s)	136, 270, 805, 898
RseI	CAYNNNNRTG	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	120, 372
SatI	GCNGC	7 cut(s)	357, 447, 450, 537, 765, 837, 915
Sau3AI	GATC	5 cut(s)	250, 300, 343, 464, 674
Sau96I	GGNCC	2 cut(s)	35, 221
ScaI	AGTACT	1 cut(s)	899
SchI	GAGTC	3 cut(s)	468, 641, 688
ScrFI	CCNGG	3 cut(s)	186, 225, 423
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	3 cut(s)	368, 734, 872
SfcI	CTRYAG	2 cut(s)	651, 837
Sfr274I	CTCGAG	2 cut(s)	696, 816
SinI	GGWCC	2 cut(s)	35, 221
SlaI	CTCGAG	2 cut(s)	696, 816
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	4 cut(s)	371, 540, 696, 816
SmoI	CTYRAG	4 cut(s)	371, 540, 696, 816
Sse9I	AATT	2 cut(s)	121, 824
SseBI	AGGCCT	1 cut(s)	790
SsiI	CCGC	4 cut(s)	142, 215, 765, 877
SspMI	CTAG	1 cut(s)	830
StuI	AGGCCT	1 cut(s)	790
StyD4I	CCNGG	3 cut(s)	184, 223, 421
StyI	CCWWGG	2 cut(s)	493, 546
TaaI	ACNGT	3 cut(s)	433, 505, 517
TaqI	TCGA	4 cut(s)	521, 697, 817, 883
TasI	AATT	2 cut(s)	121, 824
TatI	WGTACW	3 cut(s)	135, 804, 897
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	2 cut(s)	120, 372
Tru9I	TTAA	2 cut(s)	120, 372
TscAI	CASTG	3 cut(s)	485, 508, 814
TseFI	GTSAC	3 cut(s)	208, 560, 771
TseI	GCWGC	6 cut(s)	356, 446, 449, 536, 836, 914
Tsp45I	GTSAC	3 cut(s)	208, 560, 771
TspDTI	ATGAA	4 cut(s)	39, 115, 169, 431
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	3 cut(s)	485, 508, 814
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	35, 221
VspI	ATTAAT	1 cut(s)	120
XceI	RCATGY	1 cut(s)	929
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XhoI	CTCGAG	2 cut(s)	696, 816
XmiI	GTMKAC	1 cut(s)	642
XspI	CTAG	1 cut(s)	830
ZrmI	AGTACT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.