Rh1DG311300

quinone oxidoreductase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Reverse (-)
53808724 .. 53811687
2964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG311300.1

Sequence Viewer

Length: 975 bp
ATGGTCAAAGGCATTAGAGTCCATGAACATGGTGGACCTGAGGTCTTGAAATGGGAAGATGTGGAAGTAGGAGAGCCCAAGGAGGGCGAGGTTCGTGTGAAGAACAAGGCCATTGGGCTTAATTTCATCGATGTGTACTACCGCAAAGGGGTTTATAAGACTCCTTCAATTCCTTACATCCCAGGTGTCGAGGCTTGCGGAGTTGTGACAGCTGTGGGACCTGGACTAACCGGCCGGCAAGTTGGAGATGTTGTAGCCTTCGCTGGTGGTGCAATGGGCTCCTATGTGGAAGAGCAGATCCTTCCTGCTAACAAAGTTGTTCCTGTTCCTCCTTCCATTGAGCCTACTGTTGCCGCATCCCTCTTGCTTAAGGGCATGACAGCTCAGTTTCTACTGCGTCGTTGCTTCAAGGTGGAACCTGGACGTACAGTCCTTGTTCATGCAGCAGCTGGTGGAGTCGGATCCCTTTTATGCCAGTGGGCTAATGCCCTTGGTGCCACTGTCATTGGAACTGTATCAACTAAAGAGAAGGCAGCTCAAGCCAAGGAAGATGGCTGTCACCATGTCATAATCAATAAGGAAGAGGATTTTGTTGCTCGAGTGACTGAAATAACATCTGGCAATGGGGTTGAAGTTGTCTATGATTCTGTTGGGAAGGATACGTTTGAGGGATCATTGATATGCTTGAAGTCTCGTGGATACATGGTGAGTTTTGGGCAGTCATCAGGTGCACCAGATCCGGTTCCATTATCAGCTCTTTCAGTGAAGTCACTGTTCTTGACCAGGCCTTCCCTTTTCCATTACACGGCTACTCGAGATGAATTGTTAGAGACTGCAGGAGAGGTATTTGCTAATGTTGATGCAGGTGTATTGCGGGTTCGAGTAAATCACACCTACCCATTGTCTGAAGCAGCACTCGCACATTCAGACCTTGAGAATAGGAAAACATCTGGATCTGTTGTACTTATCCCCTGA

Protein Analysis

324

Amino Acids

34.41

Weight (kDa)

6.26

Isoelectric Point (pI)

31.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 28 - 110 9e-15 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 152 - 271 7.2e-25 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 185 - 322 1.7e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AarI CACCTGC 1 cut(s) 854
Acc36I ACCTGC 1 cut(s) 854
AccB1I GGYRCC 1 cut(s) 494
AciI CCGC 4 cut(s) 142, 198, 354, 874
AclWI GGATC 6 cut(s) 292, 456, 469, 679, 731, 961
AcoI YGGCCR 1 cut(s) 232
AcuI CTGAAG 1 cut(s) 927
AfaI GTAC 3 cut(s) 137, 427, 963
AfiI CCNNNNNNNGG 3 cut(s) 83, 148, 805
AflII CTTAAG 1 cut(s) 368
AgsI TTSAA 5 cut(s) 49, 168, 409, 632, 688
AhdI GACNNNNNGTC 2 cut(s) 41, 428
AjnI CCWGG 4 cut(s) 181, 220, 418, 782
AluBI AGCT 5 cut(s) 212, 383, 449, 536, 755
AluI AGCT 5 cut(s) 212, 383, 449, 536, 755
Alw21I GWGCWC 1 cut(s) 733
Alw26I GTCTC 2 cut(s) 696, 824
Alw44I GTGCAC 1 cut(s) 729
AlwI GGATC 6 cut(s) 292, 456, 469, 679, 731, 961
AlwNI CAGNNNCTG 1 cut(s) 449
Ama87I CYCGRG 2 cut(s) 597, 813
AoxI GGCC 3 cut(s) 108, 232, 785
ApaLI GTGCAC 1 cut(s) 729
ApeKI GCWGC 4 cut(s) 443, 446, 533, 911
AspS9I GGNCC 2 cut(s) 35, 218
AsuHPI GGTGA 2 cut(s) 551, 718
AvaI CYCGRG 2 cut(s) 597, 813
AvaII GGWCC 2 cut(s) 35, 218
AxyI CCTNAGG 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 733
BamHI GGATCC 1 cut(s) 461
BanI GGYRCC 1 cut(s) 494
BanII GRGCYC 2 cut(s) 78, 281
BauI CACGAG 1 cut(s) 693
Bbv12I GWGCWC 1 cut(s) 733
BbvI GCAGC 4 cut(s) 455, 458, 545, 923
BccI CCATC 1 cut(s) 545
BceAI ACGGC 1 cut(s) 822
BciT130I CCWGG 4 cut(s) 183, 222, 420, 784
BciVI GTATCC 2 cut(s) 652, 692
BcoDI GTCTC 2 cut(s) 696, 824
BfmI CTRYAG 1 cut(s) 834
BfrI CTTAAG 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 854
BfuI GTATCC 2 cut(s) 652, 692
BisI GCNGC 5 cut(s) 354, 444, 447, 534, 912
BlsI GCNGC 5 cut(s) 355, 445, 448, 535, 913
Bme1390I CCNGG 4 cut(s) 183, 222, 420, 784
Bme18I GGWCC 2 cut(s) 35, 218
BmeRI GACNNNNNGTC 2 cut(s) 41, 428
BmeT110I CYCGRG 2 cut(s) 597, 813
BmgT120I GGNCC 2 cut(s) 35, 218
BmiI GGNNCC 6 cut(s) 219, 280, 417, 463, 496, 744
BmrFI CCNGG 4 cut(s) 183, 222, 420, 784
BmsI GCATC 2 cut(s) 365, 850
BpuEI CTTGAG 2 cut(s) 522, 953
Bsa29I ATCGAT 1 cut(s) 129
BsaJI CCNNGG 4 cut(s) 78, 181, 490, 543
BsaWI WCCGGW 1 cut(s) 739
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 148, 805
Bse118I RCCGGY 2 cut(s) 230, 234
Bse1I ACTGG 1 cut(s) 475
Bse21I CCTNAGG 1 cut(s) 39
Bse3DI GCAATG 2 cut(s) 279, 628
BseBI CCWGG 4 cut(s) 183, 222, 420, 784
BseCI ATCGAT 1 cut(s) 129
BseDI CCNNGG 4 cut(s) 78, 181, 490, 543
BseGI GGATG 2 cut(s) 177, 356
BseLI CCNNNNNNNGG 3 cut(s) 83, 148, 805
BseMI GCAATG 2 cut(s) 279, 628
BseMII CTCAG 2 cut(s) 30, 398
BseNI ACTGG 1 cut(s) 475
BseSI GKGCMC 1 cut(s) 733
BseX3I CGGCCG 1 cut(s) 232
BseXI GCAGC 4 cut(s) 455, 458, 545, 923
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 3 cut(s) 110, 234, 787
BshNI GGYRCC 1 cut(s) 494
BshVI ATCGAT 1 cut(s) 129
BsiEI CGRYCG 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 733
BsiHKCI CYCGRG 2 cut(s) 597, 813
BsiSI CCGG 3 cut(s) 231, 235, 740
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 3 cut(s) 83, 148, 805
BsmAI GTCTC 2 cut(s) 696, 824
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 3 cut(s) 110, 234, 787
BsoBI CYCGRG 2 cut(s) 597, 813
Bsp1286I GDGCHC 3 cut(s) 78, 281, 733
Bsp143I GATC 5 cut(s) 297, 461, 671, 736, 953
BspACI CCGC 4 cut(s) 142, 198, 354, 874
BspANI GGCC 3 cut(s) 110, 234, 787
BspCNI CTCAG 2 cut(s) 31, 397
BspDI ATCGAT 1 cut(s) 129
BspLI GGNNCC 6 cut(s) 219, 280, 417, 463, 496, 744
BspMAI CTGCAG 1 cut(s) 838
BspMI ACCTGC 1 cut(s) 854
BspPI GGATC 6 cut(s) 292, 456, 469, 679, 731, 961
BspQI GCTCTTC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 494
BspTI CTTAAG 1 cut(s) 368
BsrDI GCAATG 2 cut(s) 279, 628
BsrFI RCCGGY 2 cut(s) 230, 234
BsrI ACTGG 1 cut(s) 475
BssAI RCCGGY 2 cut(s) 230, 234
BssECI CCNNGG 4 cut(s) 78, 181, 490, 543
BssMI GATC 5 cut(s) 297, 461, 671, 736, 953
BssSI CACGAG 1 cut(s) 693
BssT1I CCWWGG 3 cut(s) 78, 490, 543
Bst2BI CACGAG 1 cut(s) 693
Bst2UI CCWGG 4 cut(s) 183, 222, 420, 784
Bst4CI ACNGT 5 cut(s) 349, 430, 502, 514, 774
Bst6I CTCTTC 2 cut(s) 285, 576
BstAFI CTTAAG 1 cut(s) 368
BstC8I GCNNGC 2 cut(s) 196, 236
BstDEI CTNAG 2 cut(s) 39, 384
BstF5I GGATG 2 cut(s) 177, 356
BstKTI GATC 5 cut(s) 300, 464, 674, 739, 956
BstMAI GTCTC 2 cut(s) 696, 824
BstMBI GATC 5 cut(s) 297, 461, 671, 736, 953
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 269, 494, 539, 917
BstNI CCWGG 4 cut(s) 183, 222, 420, 784
BstSCI CCNGG 4 cut(s) 181, 220, 418, 782
BstSFI CTRYAG 1 cut(s) 834
BstSLI GKGCMC 1 cut(s) 733
BstV1I GCAGC 4 cut(s) 455, 458, 545, 923
BstX2I RGATCY 4 cut(s) 297, 461, 736, 953
BstXI CCANNNNNNTGG 1 cut(s) 29
BstYI RGATCY 4 cut(s) 297, 461, 736, 953
BstZI CGGCCG 1 cut(s) 232
Bsu15I ATCGAT 1 cut(s) 129
Bsu36I CCTNAGG 1 cut(s) 39
BsuI GTATCC 2 cut(s) 652, 692
BsuRI GGCC 3 cut(s) 110, 234, 787
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 2 cut(s) 177, 356
BtsIMutI CAGTG 4 cut(s) 482, 498, 768, 770
BveI ACCTGC 1 cut(s) 854
Cac8I GCNNGC 2 cut(s) 196, 236
CaiI CAGNNNCTG 1 cut(s) 449
Cfr10I RCCGGY 2 cut(s) 230, 234
Cfr13I GGNCC 2 cut(s) 35, 218
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 1 cut(s) 386
Csp6I GTAC 3 cut(s) 136, 426, 962
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 6 cut(s) 23, 29, 376, 440, 563, 703
CviQI GTAC 3 cut(s) 136, 426, 962
DdeI CTNAG 2 cut(s) 39, 384
DpnI GATC 5 cut(s) 299, 463, 673, 738, 955
DpnII GATC 5 cut(s) 297, 461, 671, 736, 953
DriI GACNNNNNGTC 2 cut(s) 41, 428
EaeI YGGCCR 1 cut(s) 232
EagI CGGCCG 1 cut(s) 232
Eam1104I CTCTTC 2 cut(s) 285, 576
Eam1105I GACNNNNNGTC 2 cut(s) 41, 428
EarI CTCTTC 2 cut(s) 285, 576
EclXI CGGCCG 1 cut(s) 232
Eco130I CCWWGG 3 cut(s) 78, 490, 543
Eco147I AGGCCT 1 cut(s) 787
Eco24I GRGCYC 2 cut(s) 78, 281
Eco47I GGWCC 2 cut(s) 35, 218
Eco52I CGGCCG 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 927
Eco81I CCTNAGG 1 cut(s) 39
Eco88I CYCGRG 2 cut(s) 597, 813
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 4 cut(s) 181, 220, 418, 782
EcoT14I CCWWGG 3 cut(s) 78, 490, 543
EcoT38I GRGCYC 2 cut(s) 78, 281
ErhI CCWWGG 3 cut(s) 78, 490, 543
FaeI CATG 6 cut(s) 26, 32, 379, 443, 566, 706
FaqI GGGAC 1 cut(s) 231
FatI CATG 6 cut(s) 22, 28, 375, 439, 562, 702
FauI CCCGC 1 cut(s) 867
Fnu4HI GCNGC 5 cut(s) 354, 444, 447, 534, 912
FokI GGATG 2 cut(s) 164, 343
FriOI GRGCYC 2 cut(s) 78, 281
Fsp4HI GCNGC 5 cut(s) 354, 444, 447, 534, 912
GluI GCNGC 5 cut(s) 354, 444, 447, 534, 912
HaeIII GGCC 3 cut(s) 110, 234, 787
HapII CCGG 3 cut(s) 231, 235, 740
HgaI GACGC 1 cut(s) 386
Hin1II CATG 6 cut(s) 26, 32, 379, 443, 566, 706
HinfI GANTC 4 cut(s) 18, 160, 456, 644
HpaII CCGG 3 cut(s) 231, 235, 740
HphI GGTGA 2 cut(s) 551, 718
Hpy166II GTNNAC 3 cut(s) 35, 136, 731
Hpy188I TCNGA 3 cut(s) 461, 907, 928
Hpy188III TCNNGA 4 cut(s) 46, 778, 815, 951
Hpy8I GTNNAC 3 cut(s) 35, 136, 731
Hpy99I CGWCG 1 cut(s) 402
HpyAV CCTTC 7 cut(s) 174, 268, 311, 342, 523, 649, 798
HpyCH4III ACNGT 5 cut(s) 349, 430, 502, 514, 774
HpyCH4IV ACGT 2 cut(s) 424, 662
HpyCH4V TGCA 5 cut(s) 272, 443, 731, 836, 863
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 494, 539, 917
HpyF3I CTNAG 2 cut(s) 39, 384
HpySE526I ACGT 2 cut(s) 424, 662
Hsp92II CATG 6 cut(s) 26, 32, 379, 443, 566, 706
KroI GCCGGC 1 cut(s) 234
KroNI GCCGGC 1 cut(s) 236
Kzo9I GATC 5 cut(s) 297, 461, 671, 736, 953
LguI GCTCTTC 1 cut(s) 285
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 4 cut(s) 455, 458, 545, 923
LweI GCATC 2 cut(s) 365, 850
MaeII ACGT 2 cut(s) 424, 662
MaeIII GTNAC 4 cut(s) 205, 557, 601, 768
MalI GATC 5 cut(s) 299, 463, 673, 738, 955
MboI GATC 5 cut(s) 297, 461, 671, 736, 953
MboII GAAGA 5 cut(s) 68, 112, 302, 560, 593
MflI RGATCY 4 cut(s) 297, 461, 736, 953
MhlI GDGCHC 3 cut(s) 78, 281, 733
MluCI AATT 3 cut(s) 121, 168, 821
MlyI GAGTC 3 cut(s) 27, 154, 465
MmeI TCCRAC 2 cut(s) 223, 439
MnlI CCTC 9 cut(s) 34, 76, 82, 184, 339, 371, 577, 661, 835
MroNI GCCGGC 1 cut(s) 234
MseI TTAA 2 cut(s) 120, 369
MslI CAYNNNNRTG 3 cut(s) 27, 131, 679
MspA1I CMGCKG 2 cut(s) 212, 449
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 3 cut(s) 231, 235, 740
MspR9I CCNGG 4 cut(s) 183, 222, 420, 784
MvaI CCWGG 4 cut(s) 183, 222, 420, 784
MwoI GCNNNNNNNGC 4 cut(s) 269, 494, 539, 917
NaeI GCCGGC 1 cut(s) 236
NdeII GATC 5 cut(s) 297, 461, 671, 736, 953
NgoMIV GCCGGC 1 cut(s) 234
NlaIII CATG 6 cut(s) 26, 32, 379, 443, 566, 706
NlaIV GGNNCC 6 cut(s) 219, 280, 417, 463, 496, 744
NmuCI GTSAC 4 cut(s) 205, 557, 601, 768
PaeR7I CTCGAG 2 cut(s) 597, 813
PaqCI CACCTGC 1 cut(s) 854
PceI AGGCCT 1 cut(s) 787
PciSI GCTCTTC 1 cut(s) 285
PdiI GCCGGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 644
PkrI GCNGC 5 cut(s) 355, 445, 448, 535, 913
PleI GAGTC 3 cut(s) 26, 154, 464
PpsI GAGTC 3 cut(s) 26, 154, 464
PpuMI RGGWCCY 1 cut(s) 218
PsiI TTATAA 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 4 cut(s) 181, 220, 418, 782
PspGI CCWGG 4 cut(s) 181, 220, 418, 782
PspN4I GGNNCC 6 cut(s) 219, 280, 417, 463, 496, 744
PspPI GGNCC 2 cut(s) 35, 218
PspPPI RGGWCCY 1 cut(s) 218
PspXI VCTCGAGB 1 cut(s) 597
PsrI GAACNNNNNNTAC 2 cut(s) 861, 893
PstI CTGCAG 1 cut(s) 838
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 4 cut(s) 297, 461, 736, 953
PvuII CAGCTG 2 cut(s) 212, 449
RsaI GTAC 3 cut(s) 137, 427, 963
RsaNI GTAC 3 cut(s) 136, 426, 962
RseI CAYNNNNRTG 3 cut(s) 27, 131, 679
SapI GCTCTTC 1 cut(s) 285
SaqAI TTAA 2 cut(s) 120, 369
SatI GCNGC 5 cut(s) 354, 444, 447, 534, 912
Sau3AI GATC 5 cut(s) 297, 461, 671, 736, 953
Sau96I GGNCC 2 cut(s) 35, 218
SchI GAGTC 3 cut(s) 27, 154, 465
ScrFI CCNGG 4 cut(s) 183, 222, 420, 784
SduI GDGCHC 3 cut(s) 78, 281, 733
SfaNI GCATC 2 cut(s) 365, 850
SfcI CTRYAG 1 cut(s) 834
Sfr274I CTCGAG 2 cut(s) 597, 813
SinI GGWCC 2 cut(s) 35, 218
SlaI CTCGAG 2 cut(s) 597, 813
SmiMI CAYNNNNRTG 3 cut(s) 27, 131, 679
SmlI CTYRAG 5 cut(s) 368, 537, 597, 813, 932
SmoI CTYRAG 5 cut(s) 368, 537, 597, 813, 932
Sse9I AATT 3 cut(s) 121, 168, 821
SseBI AGGCCT 1 cut(s) 787
SsiI CCGC 4 cut(s) 142, 198, 354, 874
StuI AGGCCT 1 cut(s) 787
StyD4I CCNGG 4 cut(s) 181, 220, 418, 782
StyI CCWWGG 3 cut(s) 78, 490, 543
TaaI ACNGT 5 cut(s) 349, 430, 502, 514, 774
TaiI ACGT 2 cut(s) 427, 665
TaqI TCGA 5 cut(s) 129, 189, 598, 814, 880
TasI AATT 3 cut(s) 121, 168, 821
TatI WGTACW 2 cut(s) 135, 961
TauI GCSGC 1 cut(s) 356
TfiI GAWTC 1 cut(s) 644
Tru1I TTAA 2 cut(s) 120, 369
Tru9I TTAA 2 cut(s) 120, 369
TscAI CASTG 4 cut(s) 482, 505, 768, 777
TseFI GTSAC 4 cut(s) 205, 557, 601, 768
TseI GCWGC 4 cut(s) 443, 446, 533, 911
Tsp45I GTSAC 4 cut(s) 205, 557, 601, 768
TspDTI ATGAA 4 cut(s) 39, 115, 428, 834
TspRI CASTG 4 cut(s) 482, 505, 768, 777
Vha464I CTTAAG 1 cut(s) 368
VneI GTGCAC 1 cut(s) 729
VpaK11BI GGWCC 2 cut(s) 35, 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XhoI CTCGAG 2 cut(s) 597, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.