Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001661

Physical Location & Seq

Genomic Coordinates Reverse (-)

60515570 .. 60530056

Gene Structure 14487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG385100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCCAAGGCTATTCAAATTCATGAACTTGGTGGACCTGAGGTATTGAAATGGGAAGATGTCAAAATAGGAGAGCCGAAGGAGGGTGAGATTCGTGTGAAGAACAAGGCTATTGGGATTAATTTCATTGATGTGTACTTCCGCAAAGGGCTTTATTACAAGGCTGATACAATGCCCTTCATCCCAGGTATGGAGGCTTGTGGAGTTGTGACAGCGGTTGGACCTGGACTAACAGGGAGGCAAGTTGGAGATCTTGTCGCGTATATTGGTACACCGATGGGCTCATATGCAGAAGAGCAGATCCTTCCTGCAAACAAAGTTGTGCCTGTTCCTCCTTCCATTGATCCTATTGTTGCAGCATCCGTCATGCTTAAGGGTATGACAGCTCAGGTTCTACTACGCCAATGTTTCAAGGTTGAACCTGGACACACAGTCCTTGTTCATGCAGCAGCTGGTGGAGTAGGATCCCTTTTATGCCAGTGGGCTAATGCCCTTGATGCCACTGTCATTGGAACTGTATCGACTAAAGAGAAGGCAGCTCAAGCCAAAGAAGATGGCTGTTGTTTGGCTCCAAAACCAGCTGGTGACTTTGTTGCTCGTGTGACTGAAATAACATCTGATAATGGAGTTGATGTTGTCTACGACTCTGTAGGCAAGGATACCTTTAAGGGATCATTGGCTTGCTTGAAGACTCGAGGATACATGGTCAGTTTCGGGCAGGCATCAGGTAGACCTGACCCTGTTCCATTGTCAGCTCTTGCTGCAAAGTCACTCTTCTTGACAAGGCCTGCCCTTTTCCAGTACACTGCAACTCGAGACAAATTGCTAGAGGCTGCAGGAGAGTTATTTGCTAATGTTGCATCAGGTGTGTTGCGGGTTCGAGTAAATCACAAGTACTCATTGTCTCATGCAGCACAAGCACATGCAGACTTGGAGAATAGGAAAACATCTGGTTCAGCTGTTCTTATTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003960 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009653 GO:0009664 GO:0009826 GO:0009827 GO:0009828 GO:0009987 GO:0016020 GO:0016043 GO:0016049 GO:0016491 GO:0016651 GO:0016655 GO:0017091 GO:0030312 GO:0032502 GO:0032989 GO:0033554 GO:0034599 GO:0040007 GO:0042221 GO:0042545 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055114 GO:0060560 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

324

Amino Acids

34.26

Weight (kDa)

8.42

Isoelectric Point (pI)

26.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	28 - 111	1.1e-15	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	153 - 260	4.1e-21	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	196 - 322	5.5e-17	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001661)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61510 AT5G61510
fragaria_vesca	FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27132 FvH4_7g27140
malus_domestica	MD01G1178400.v1.1 MD01G1179500.v1.1 MD01G1180600.v1.1 MD07G1250800.v1.1 MD07G1251000.v1.1
prunus_persica	Prupe.2G133300_v2.0.a1 Prupe.2G133300_v2.0.a1 Prupe.2G274500_v2.0.a1 Prupe.2G274600_v2.0.a1
pyrus_communis	pycom01g18920 pycom01g19010 pycom01g19080 pycom07g22370
rosa_chinensis	RchiOBHm_Chr1g0363511 RchiOBHm_Chr1g0373931 RchiOBHm_Chr1g0373941
rosa_laevigata	RLG00000026793 RLG00000026794 RLG00000027560
rosa_multiflora	Rmu_sc0002022.1_g000001 Rmu_sc0002740.1_g000012 Rmu_sc0008820.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283890 Rroxscaffold_4G00293100
rosa_rugosa	Rorug01G0308000 Rorug01G0379800 Rorug01G0379900
rosa_samantha	Rh1AG316700 Rh1AG390100 Rh1AG390200 Rh1BG280100 Rh1BG354400 Rh1BG354500 Rh1CG296200 Rh1CG367500 Rh1CG367600 Rh1DG311300 Rh1DG385100 Rh1DG385200
rosa_wichuraiana	Rw1G028070 Rw1G034500 Rw1G034510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	639, 730
AccII	CGCG	1 cut(s)	260
AciI	CCGC	3 cut(s)	142, 215, 874
AclWI	GGATC	5 cut(s)	295, 338, 459, 472, 679
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	18
AfaI	GTAC	4 cut(s)	137, 271, 803, 896
AfiI	CCNNNNNNNGG	2 cut(s)	83, 190
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	17, 49, 412, 419, 688
AhdI	GACNNNNNGTC	1 cut(s)	431
AjnI	CCWGG	3 cut(s)	184, 223, 421
AluBI	AGCT	6 cut(s)	386, 452, 539, 581, 755, 959
AluI	AGCT	6 cut(s)	386, 452, 539, 581, 755, 959
Alw26I	GTCTC	2 cut(s)	810, 909
AlwI	GGATC	5 cut(s)	295, 338, 459, 472, 679
AlwNI	CAGNNNCTG	1 cut(s)	452
Ama87I	CYCGRG	2 cut(s)	693, 813
AoxI	GGCC	2 cut(s)	3, 785
ApeKI	GCWGC	7 cut(s)	356, 446, 449, 536, 761, 833, 911
ApoI	RAATTY	1 cut(s)	18
AseI	ATTAAT	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	35, 221
AsuHPI	GGTGA	2 cut(s)	98, 596
AvaI	CYCGRG	2 cut(s)	693, 813
AvaII	GGWCC	2 cut(s)	35, 221
AxyI	CCTNAGG	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	284
BauI	CACGAG	1 cut(s)	597
BbsI	GAAGAC	1 cut(s)	695
BbvI	GCAGC	7 cut(s)	368, 458, 461, 548, 748, 820, 923
BccI	CCATC	2 cut(s)	271, 548
BciT130I	CCWGG	3 cut(s)	186, 225, 423
BciVI	GTATCC	2 cut(s)	652, 692
BcoDI	GTCTC	2 cut(s)	810, 909
BfaI	CTAG	1 cut(s)	827
BfmI	CTRYAG	2 cut(s)	648, 834
BfrI	CTTAAG	1 cut(s)	371
BfuI	GTATCC	2 cut(s)	652, 692
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	7 cut(s)	357, 447, 450, 537, 762, 834, 912
BlsI	GCNGC	7 cut(s)	358, 448, 451, 538, 763, 835, 913
BmcAI	AGTACT	1 cut(s)	896
Bme1390I	CCNGG	3 cut(s)	186, 225, 423
Bme18I	GGWCC	2 cut(s)	35, 221
BmeRI	GACNNNNNGTC	1 cut(s)	431
BmeT110I	CYCGRG	2 cut(s)	693, 813
BmgT120I	GGNCC	2 cut(s)	35, 221
BmiI	GGNNCC	2 cut(s)	466, 570
BmrFI	CCNGG	3 cut(s)	186, 225, 423
BmsI	GCATC	4 cut(s)	368, 487, 731, 869
BpiI	GAAGAC	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	6, 184
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 618, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 190
Bse1I	ACTGG	2 cut(s)	478, 799
Bse21I	CCTNAGG	1 cut(s)	39
BseBI	CCWGG	3 cut(s)	186, 225, 423
BseDI	CCNNGG	2 cut(s)	6, 184
BseGI	GGATG	2 cut(s)	180, 359
BseLI	CCNNNNNNNGG	2 cut(s)	83, 190
BseMII	CTCAG	2 cut(s)	30, 401
BseNI	ACTGG	2 cut(s)	478, 799
BseXI	GCAGC	7 cut(s)	368, 458, 461, 548, 748, 820, 923
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	2 cut(s)	5, 787
BsiHKCI	CYCGRG	2 cut(s)	693, 813
BslI	CCNNNNNNNGG	2 cut(s)	83, 190
BsmAI	GTCTC	2 cut(s)	810, 909
BsnI	GGCC	2 cut(s)	5, 787
BsoBI	CYCGRG	2 cut(s)	693, 813
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	5 cut(s)	250, 300, 343, 464, 671
BspACI	CCGC	3 cut(s)	142, 215, 874
BspANI	GGCC	2 cut(s)	5, 787
BspCNI	CTCAG	2 cut(s)	31, 400
BspFNI	CGCG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	466, 570
BspMAI	CTGCAG	1 cut(s)	838
BspPI	GGATC	5 cut(s)	295, 338, 459, 472, 679
BspQI	GCTCTTC	1 cut(s)	288
BspTI	CTTAAG	1 cut(s)	371
BsrI	ACTGG	2 cut(s)	478, 799
BssECI	CCNNGG	2 cut(s)	6, 184
BssMI	GATC	5 cut(s)	250, 300, 343, 464, 671
BssSI	CACGAG	1 cut(s)	597
BssT1I	CCWWGG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	3 cut(s)	186, 225, 423
Bst4CI	ACNGT	3 cut(s)	433, 505, 517
Bst6I	CTCTTC	2 cut(s)	288, 779
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	682, 720, 789
BstDEI	CTNAG	2 cut(s)	39, 387
BstF5I	GGATG	2 cut(s)	180, 359
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	5 cut(s)	253, 303, 346, 467, 674
BstMAI	GTCTC	2 cut(s)	810, 909
BstMBI	GATC	5 cut(s)	250, 300, 343, 464, 671
BstMWI	GCNNNNNNNGC	5 cut(s)	497, 542, 761, 857, 917
BstNI	CCWGG	3 cut(s)	186, 225, 423
BstNSI	RCATGY	1 cut(s)	926
BstSCI	CCNGG	3 cut(s)	184, 223, 421
BstSFI	CTRYAG	2 cut(s)	648, 834
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	7 cut(s)	368, 458, 461, 548, 748, 820, 923
BstV2I	GAAGAC	1 cut(s)	695
BstX2I	RGATCY	3 cut(s)	250, 300, 464
BstYI	RGATCY	3 cut(s)	250, 300, 464
Bsu36I	CCTNAGG	1 cut(s)	39
BsuI	GTATCC	2 cut(s)	652, 692
BsuRI	GGCC	2 cut(s)	5, 787
BtsCI	GGATG	2 cut(s)	180, 359
BtsI	GCAGTG	1 cut(s)	804
BtsIMutI	CAGTG	3 cut(s)	485, 501, 804
Cac8I	GCNNGC	3 cut(s)	682, 720, 789
CaiI	CAGNNNCTG	1 cut(s)	452
CciI	TCATGA	1 cut(s)	22
Cfr13I	GGNCC	2 cut(s)	35, 221
Csp6I	GTAC	4 cut(s)	136, 270, 802, 895
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	6 cut(s)	23, 367, 443, 703, 908, 923
CviQI	GTAC	4 cut(s)	136, 270, 802, 895
DdeI	CTNAG	2 cut(s)	39, 387
DpnI	GATC	5 cut(s)	252, 302, 345, 466, 673
DpnII	GATC	5 cut(s)	250, 300, 343, 464, 671
DriI	GACNNNNNGTC	1 cut(s)	431
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	288, 779
Eam1105I	GACNNNNNGTC	1 cut(s)	431
EarI	CTCTTC	2 cut(s)	288, 779
Eco130I	CCWWGG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	787
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	35, 221
Eco81I	CCTNAGG	1 cut(s)	39
Eco88I	CYCGRG	2 cut(s)	693, 813
EcoRII	CCWGG	3 cut(s)	184, 223, 421
EcoT14I	CCWWGG	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	6 cut(s)	26, 370, 446, 706, 911, 926
FalI	AAGNNNNNCTT	4 cut(s)	647, 679, 758, 790
FatI	CATG	6 cut(s)	22, 366, 442, 702, 907, 922
FauI	CCCGC	1 cut(s)	867
FauNDI	CATATG	1 cut(s)	286
FblI	GTMKAC	2 cut(s)	639, 730
Fnu4HI	GCNGC	7 cut(s)	357, 447, 450, 537, 762, 834, 912
FokI	GGATG	2 cut(s)	167, 346
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	7 cut(s)	357, 447, 450, 537, 762, 834, 912
FspBI	CTAG	1 cut(s)	827
GluI	GCNGC	7 cut(s)	357, 447, 450, 537, 762, 834, 912
HaeIII	GGCC	2 cut(s)	5, 787
Hin1II	CATG	6 cut(s)	26, 370, 446, 706, 911, 926
HinfI	GANTC	3 cut(s)	91, 644, 691
HphI	GGTGA	2 cut(s)	98, 596
Hpy166II	GTNNAC	6 cut(s)	35, 136, 272, 640, 731, 804
Hpy188I	TCNGA	1 cut(s)	619
Hpy188III	TCNNGA	3 cut(s)	23, 778, 815
Hpy8I	GTNNAC	6 cut(s)	35, 136, 272, 640, 731, 804
HpyAV	CCTTC	5 cut(s)	73, 187, 314, 345, 526
HpyCH4III	ACNGT	3 cut(s)	433, 505, 517
HpyF10VI	GCNNNNNNNGC	5 cut(s)	497, 542, 761, 857, 917
HpyF3I	CTNAG	2 cut(s)	39, 387
Hsp92II	CATG	6 cut(s)	26, 370, 446, 706, 911, 926
Kzo9I	GATC	5 cut(s)	250, 300, 343, 464, 671
LguI	GCTCTTC	1 cut(s)	288
LmnI	GCTCC	1 cut(s)	574
Lsp1109I	GCAGC	7 cut(s)	368, 458, 461, 548, 748, 820, 923
LweI	GCATC	4 cut(s)	368, 487, 731, 869
MaeI	CTAG	1 cut(s)	827
MaeIII	GTNAC	4 cut(s)	208, 584, 601, 768
MalI	GATC	5 cut(s)	252, 302, 345, 466, 673
MboI	GATC	5 cut(s)	250, 300, 343, 464, 671
MboII	GAAGA	6 cut(s)	68, 112, 305, 563, 700, 766
MflI	RGATCY	3 cut(s)	250, 300, 464
MhlI	GDGCHC	1 cut(s)	284
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	18, 121, 821
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	638, 685
MmeI	TCCRAC	2 cut(s)	199, 226
MnlI	CCTC	7 cut(s)	34, 76, 187, 231, 342, 689, 823
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	120, 372, 666, 973
MslI	CAYNNNNRTG	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	4 cut(s)	215, 452, 581, 959
MspCI	CTTAAG	1 cut(s)	371
MspR9I	CCNGG	3 cut(s)	186, 225, 423
MvaI	CCWGG	3 cut(s)	186, 225, 423
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	5 cut(s)	497, 542, 761, 857, 917
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	5 cut(s)	250, 300, 343, 464, 671
NlaIII	CATG	6 cut(s)	26, 370, 446, 706, 911, 926
NlaIV	GGNNCC	2 cut(s)	466, 570
NmuCI	GTSAC	4 cut(s)	208, 584, 601, 768
NspI	RCATGY	1 cut(s)	926
PaeR7I	CTCGAG	2 cut(s)	693, 813
PagI	TCATGA	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	787
PciSI	GCTCTTC	1 cut(s)	288
PfeI	GAWTC	1 cut(s)	91
PkrI	GCNGC	7 cut(s)	358, 448, 451, 538, 763, 835, 913
PleI	GAGTC	2 cut(s)	638, 685
PpsI	GAGTC	2 cut(s)	638, 685
PshBI	ATTAAT	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	184, 223, 421
PspGI	CCWGG	3 cut(s)	184, 223, 421
PspN4I	GGNNCC	2 cut(s)	466, 570
PspPI	GGNCC	2 cut(s)	35, 221
PspXI	VCTCGAGB	1 cut(s)	693
PstI	CTGCAG	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	452
PsuI	RGATCY	3 cut(s)	250, 300, 464
PvuII	CAGCTG	3 cut(s)	452, 581, 959
RsaI	GTAC	4 cut(s)	137, 271, 803, 896
RsaNI	GTAC	4 cut(s)	136, 270, 802, 895
RseI	CAYNNNNRTG	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	288
SaqAI	TTAA	4 cut(s)	120, 372, 666, 973
SatI	GCNGC	7 cut(s)	357, 447, 450, 537, 762, 834, 912
Sau3AI	GATC	5 cut(s)	250, 300, 343, 464, 671
Sau96I	GGNCC	2 cut(s)	35, 221
ScaI	AGTACT	1 cut(s)	896
SchI	GAGTC	2 cut(s)	638, 685
ScrFI	CCNGG	3 cut(s)	186, 225, 423
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	4 cut(s)	368, 487, 731, 869
SfcI	CTRYAG	2 cut(s)	648, 834
Sfr274I	CTCGAG	2 cut(s)	693, 813
SinI	GGWCC	2 cut(s)	35, 221
SlaI	CTCGAG	2 cut(s)	693, 813
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	4 cut(s)	371, 540, 693, 813
SmoI	CTYRAG	4 cut(s)	371, 540, 693, 813
Sse9I	AATT	3 cut(s)	18, 121, 821
SseBI	AGGCCT	1 cut(s)	787
SsiI	CCGC	3 cut(s)	142, 215, 874
SspMI	CTAG	1 cut(s)	827
StuI	AGGCCT	1 cut(s)	787
StyD4I	CCNGG	3 cut(s)	184, 223, 421
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	433, 505, 517
TaqI	TCGA	4 cut(s)	521, 694, 814, 880
TasI	AATT	3 cut(s)	18, 121, 821
TatI	WGTACW	3 cut(s)	135, 801, 894
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	4 cut(s)	120, 372, 666, 973
Tru9I	TTAA	4 cut(s)	120, 372, 666, 973
TscAI	CASTG	3 cut(s)	485, 508, 811
TseFI	GTSAC	4 cut(s)	208, 584, 601, 768
TseI	GCWGC	7 cut(s)	356, 446, 449, 536, 761, 833, 911
Tsp45I	GTSAC	4 cut(s)	208, 584, 601, 768
TspDTI	ATGAA	5 cut(s)	11, 39, 115, 169, 431
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	3 cut(s)	485, 508, 811
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	2 cut(s)	35, 221
VspI	ATTAAT	1 cut(s)	120
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	1 cut(s)	926
XhoI	CTCGAG	2 cut(s)	693, 813
XmiI	GTMKAC	2 cut(s)	639, 730
XspI	CTAG	1 cut(s)	827
ZrmI	AGTACT	1 cut(s)	896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.