Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Forward (+)

32206040 .. 32209344

Gene Structure 3305 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1147700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGACCATGCTCATGTCGCTAATTCCAAATTTGAGAGGTTACTGCTTGATGAACGTGCAGATTACATGTTGCAAGCAACAGACAAGCACAAAAGTCATCAGTTTGACATGCCTCAGGTTCAATCGGATACCGCTGACCAACTGTATGGCGGACCTCTTATGCTGTTCCATAACCTGGATTTGTGTATGCACCTGCCAATGACTGGCGACAATGCTAAGAACCAATCTACAAATTCTGGAGGCTCTTCAACGTCCCTTCCTCTGTTTGATTCAATTTCATTCGACAAAGCTGGTTTAAATAGTGAATCATTTGAATATTCAGTGCCTCAGAGGAGGTATGTTCTAAGAAAGCGGTTTGGCTGTGGATCATATGGAGAAGTATGGCTGGCTTATAATCCGGACTATCATCAAGACAGCAATGCTTCATACTCGAGCCCTCCTGATGACAACTTGTTCATTTTAAAACGCATAATGGTGGAGAGAGGGGCTTCTGTTTACTTAAGTGGTTTAAGGGAAAAGCATTTTGGAGATTTTTTCCTAAAAGCCTCTTCTTGTGTTGAAGGAATGCGTAGAGGTTTTTGTGAAGAAGGTTTGAAACATATTGCAAGATATGTAGAGTCGGTGGAGTCTCGCGTAAATGAAATATGGCTTGCATTTCATCATGAGGGTATTTCGCTGTCAAAGCTGATGTATACTGTGGGAGATGACACGGATGTTGATGAAGTCGAGCATTTCCAGATCTTGCGTCCATCACAATGGTTGCACTGGTTGAAGACAACAAAAGAAGGACAGGAGCAAATGCGCAGTCTGATATGGCAGTTGGTAGGTCACATATTTAATTTCTATGAAACTATTTTGTTACTCTGTAAAATACTGAGTCTCATAGCTAGCTTGTATAGGAGGTTTCTTGGATTTGATGGATGCCTTACCCTTAATTTGTACAGTTTTGGGATTGTCTCATTCTTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

324

Amino Acids

37.13

Weight (kDa)

5.85

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	393
AarI	CACCTGC	1 cut(s)	201
Acc16I	TGCGCA	1 cut(s)	803
Acc36I	ACCTGC	1 cut(s)	201
AccB7I	CCANNNNNTGG	2 cut(s)	175, 203
AccI	GTMKAC	1 cut(s)	692
AccII	CGCG	1 cut(s)	633
AccIII	TCCGGA	1 cut(s)	397
AciI	CCGC	3 cut(s)	132, 150, 352
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	29, 232
AfaI	GTAC	1 cut(s)	941
AfiI	CCNNNNNNNGG	2 cut(s)	175, 203
AflII	CTTAAG	1 cut(s)	499
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	7 cut(s)	122, 249, 273, 314, 560, 595, 772
AjnI	CCWGG	1 cut(s)	174
AjuI	GAANNNNNNNTTGG	2 cut(s)	507, 539
AluBI	AGCT	4 cut(s)	290, 685, 887, 891
AluI	AGCT	4 cut(s)	290, 685, 887, 891
Alw26I	GTCTC	3 cut(s)	633, 884, 961
AlwI	GGATC	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	430
Aor13HI	TCCGGA	1 cut(s)	397
ApoI	RAATTY	2 cut(s)	29, 232
ArsI	GACNNNNNNTTYG	2 cut(s)	790, 822
AspLEI	GCGC	1 cut(s)	804
AspS9I	GGNCC	2 cut(s)	4, 152
AsuNHI	GCTAGC	1 cut(s)	887
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	2 cut(s)	4, 152
AxyI	CCTNAGG	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	779
BccI	CCATC	2 cut(s)	757, 911
BciT130I	CCWGG	1 cut(s)	176
BciVI	GTATCC	1 cut(s)	121
BcoDI	GTCTC	3 cut(s)	633, 884, 961
BfaI	CTAG	2 cut(s)	888, 970
BfrI	CTTAAG	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	121
BglII	AGATCT	1 cut(s)	738
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	2 cut(s)	4, 152
BmeT110I	CYCGRG	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	4, 152
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	911
BmtI	GCTAGC	1 cut(s)	891
BpiI	GAAGAC	1 cut(s)	779
BpmI	CTGGAG	1 cut(s)	258
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 203
Bse1I	ACTGG	2 cut(s)	208, 770
Bse21I	CCTNAGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	424
BseAI	TCCGGA	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	176
BseGI	GGATG	2 cut(s)	718, 926
BseLI	CCNNNNNNNGG	2 cut(s)	175, 203
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	3 cut(s)	128, 341, 866
BseNI	ACTGG	2 cut(s)	208, 770
BseRI	GAGGAG	1 cut(s)	346
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	633
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	175, 203
BsmAI	GTCTC	3 cut(s)	633, 884, 961
BsmFI	GGGAC	1 cut(s)	238
BsmI	GAATGC	1 cut(s)	570
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp13I	TCCGGA	1 cut(s)	397
Bsp1407I	TGTACA	1 cut(s)	939
Bsp143I	GATC	2 cut(s)	365, 738
BspACI	CCGC	3 cut(s)	132, 150, 352
BspCNI	CTCAG	3 cut(s)	127, 340, 867
BspEI	TCCGGA	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	633
BspHI	TCATGA	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	201
BspOI	GCTAGC	1 cut(s)	891
BspPI	GGATC	1 cut(s)	373
BspQI	GCTCTTC	1 cut(s)	250
BspTI	CTTAAG	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	424
BsrGI	TGTACA	1 cut(s)	939
BsrI	ACTGG	2 cut(s)	208, 770
BssMI	GATC	2 cut(s)	365, 738
BssNAI	GTATAC	1 cut(s)	693
Bst1107I	GTATAC	1 cut(s)	693
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	3 cut(s)	144, 697, 944
Bst6I	CTCTTC	2 cut(s)	250, 553
BstAFI	CTTAAG	1 cut(s)	499
BstAUI	TGTACA	1 cut(s)	939
BstC8I	GCNNGC	4 cut(s)	75, 387, 651, 889
BstDEI	CTNAG	5 cut(s)	114, 216, 327, 344, 875
BstF5I	GGATG	2 cut(s)	718, 926
BstFNI	CGCG	1 cut(s)	633
BstHHI	GCGC	1 cut(s)	804
BstKTI	GATC	2 cut(s)	368, 741
BstMAI	GTCTC	3 cut(s)	633, 884, 961
BstMBI	GATC	2 cut(s)	365, 738
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 682
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	2 cut(s)	70, 112
BstSCI	CCNGG	1 cut(s)	174
BstUI	CGCG	1 cut(s)	633
BstV2I	GAAGAC	1 cut(s)	779
BstX2I	RGATCY	1 cut(s)	738
BstXI	CCANNNNNNTGG	2 cut(s)	146, 756
BstYI	RGATCY	1 cut(s)	738
BstZ17I	GTATAC	1 cut(s)	693
Bsu36I	CCTNAGG	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	718, 926
BtsIMutI	CAGTG	2 cut(s)	327, 763
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	4 cut(s)	75, 387, 651, 889
CciI	TCATGA	1 cut(s)	661
CfoI	GCGC	1 cut(s)	804
Cfr13I	GGNCC	2 cut(s)	4, 152
CseI	GACGC	1 cut(s)	734
Csp6I	GTAC	1 cut(s)	940
CviAII	CATG	5 cut(s)	8, 14, 67, 109, 662
CviQI	GTAC	1 cut(s)	940
DdeI	CTNAG	5 cut(s)	114, 216, 327, 344, 875
DpnI	GATC	2 cut(s)	367, 740
DpnII	GATC	2 cut(s)	365, 738
DraI	TTTAAA	2 cut(s)	297, 462
Eam1104I	CTCTTC	2 cut(s)	250, 553
EarI	CTCTTC	2 cut(s)	250, 553
EciI	GGCGGA	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	437
Eco47I	GGWCC	2 cut(s)	4, 152
Eco81I	CCTNAGG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	174
EcoT38I	GRGCYC	1 cut(s)	437
FaeI	CATG	5 cut(s)	11, 17, 70, 112, 665
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	5 cut(s)	7, 13, 66, 108, 661
FauNDI	CATATG	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	692
FokI	GGATG	2 cut(s)	725, 933
FriOI	GRGCYC	1 cut(s)	437
FspBI	CTAG	2 cut(s)	888, 970
FspI	TGCGCA	1 cut(s)	803
GlaI	GCGC	1 cut(s)	803
GsuI	CTGGAG	1 cut(s)	258
HapII	CCGG	1 cut(s)	398
HgaI	GACGC	1 cut(s)	734
HhaI	GCGC	1 cut(s)	804
Hin1II	CATG	5 cut(s)	11, 17, 70, 112, 665
Hin6I	GCGC	1 cut(s)	802
HinP1I	GCGC	1 cut(s)	802
HinfI	GANTC	5 cut(s)	269, 305, 617, 626, 877
HpaII	CCGG	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	496, 693
Hpy188I	TCNGA	3 cut(s)	127, 330, 810
Hpy188III	TCNNGA	6 cut(s)	237, 398, 410, 440, 662, 736
Hpy8I	GTNNAC	2 cut(s)	496, 693
HpyAV	CCTTC	4 cut(s)	266, 554, 581, 779
HpyCH4III	ACNGT	3 cut(s)	144, 697, 944
HpyCH4IV	ACGT	2 cut(s)	55, 251
HpyCH4V	TGCA	6 cut(s)	59, 73, 190, 605, 653, 763
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 682
HpyF3I	CTNAG	5 cut(s)	114, 216, 327, 344, 875
HpySE526I	ACGT	2 cut(s)	55, 251
Hsp92II	CATG	5 cut(s)	11, 17, 70, 112, 665
HspAI	GCGC	1 cut(s)	802
Kpn2I	TCCGGA	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	365, 738
LguI	GCTCTTC	1 cut(s)	250
LmnI	GCTCC	1 cut(s)	793
LweI	GCATC	1 cut(s)	911
MaeI	CTAG	2 cut(s)	888, 970
MaeII	ACGT	2 cut(s)	55, 251
MaeIII	GTNAC	3 cut(s)	39, 827, 858
MalI	GATC	2 cut(s)	367, 740
MboI	GATC	2 cut(s)	365, 738
MboII	GAAGA	4 cut(s)	237, 540, 596, 784
MflI	RGATCY	1 cut(s)	738
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	6 cut(s)	22, 29, 232, 273, 838, 934
MlyI	GAGTC	3 cut(s)	626, 635, 886
MroI	TCCGGA	1 cut(s)	397
MseI	TTAA	6 cut(s)	296, 461, 500, 509, 837, 933
MslI	CAYNNNNRTG	3 cut(s)	12, 473, 754
MspA1I	CMGCKG	1 cut(s)	134
MspCI	CTTAAG	1 cut(s)	499
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	176
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	2 cut(s)	17, 682
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	2 cut(s)	365, 738
NheI	GCTAGC	1 cut(s)	887
NlaIII	CATG	5 cut(s)	11, 17, 70, 112, 665
NmuCI	GTSAC	1 cut(s)	827
NsbI	TGCGCA	1 cut(s)	803
NspI	RCATGY	2 cut(s)	70, 112
PaeR7I	CTCGAG	1 cut(s)	430
PagI	TCATGA	1 cut(s)	661
PaqCI	CACCTGC	1 cut(s)	201
PciI	ACATGT	1 cut(s)	66
PciSI	GCTCTTC	1 cut(s)	250
PctI	GAATGC	1 cut(s)	570
PfeI	GAWTC	2 cut(s)	269, 305
PflMI	CCANNNNNTGG	2 cut(s)	175, 203
PleI	GAGTC	3 cut(s)	625, 634, 885
PpsI	GAGTC	3 cut(s)	625, 634, 885
PscI	ACATGT	1 cut(s)	66
PsiI	TTATAA	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspPI	GGNCC	2 cut(s)	4, 152
PspXI	VCTCGAGB	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	738
RsaI	GTAC	1 cut(s)	941
RsaNI	GTAC	1 cut(s)	940
RseI	CAYNNNNRTG	3 cut(s)	12, 473, 754
SapI	GCTCTTC	1 cut(s)	250
SaqAI	TTAA	6 cut(s)	296, 461, 500, 509, 837, 933
Sau3AI	GATC	2 cut(s)	365, 738
Sau96I	GGNCC	2 cut(s)	4, 152
SchI	GAGTC	3 cut(s)	626, 635, 886
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	437
SfaNI	GCATC	1 cut(s)	911
Sfr274I	CTCGAG	1 cut(s)	430
SinI	GGWCC	2 cut(s)	4, 152
SlaI	CTCGAG	1 cut(s)	430
SmiMI	CAYNNNNRTG	3 cut(s)	12, 473, 754
SmlI	CTYRAG	2 cut(s)	430, 499
SmoI	CTYRAG	2 cut(s)	430, 499
Sse9I	AATT	6 cut(s)	22, 29, 232, 273, 838, 934
SsiI	CCGC	3 cut(s)	132, 150, 352
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	2 cut(s)	888, 970
StyD4I	CCNGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	144, 697, 944
TaiI	ACGT	2 cut(s)	58, 254
TaqI	TCGA	3 cut(s)	282, 431, 726
TasI	AATT	6 cut(s)	22, 29, 232, 273, 838, 934
TatI	WGTACW	1 cut(s)	939
TfiI	GAWTC	2 cut(s)	269, 305
Tru1I	TTAA	6 cut(s)	296, 461, 500, 509, 837, 933
Tru9I	TTAA	6 cut(s)	296, 461, 500, 509, 837, 933
TscAI	CASTG	2 cut(s)	327, 770
TseFI	GTSAC	1 cut(s)	827
Tsp45I	GTSAC	1 cut(s)	827
TspDTI	ATGAA	8 cut(s)	66, 267, 414, 445, 647, 654, 735, 861
TspGWI	ACGGA	1 cut(s)	725
TspRI	CASTG	2 cut(s)	327, 770
Van91I	CCANNNNNTGG	2 cut(s)	175, 203
Vha464I	CTTAAG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	4, 152
XapI	RAATTY	2 cut(s)	29, 232
XceI	RCATGY	2 cut(s)	70, 112
XhoI	CTCGAG	1 cut(s)	430
XmiI	GTMKAC	1 cut(s)	692
XspI	CTAG	2 cut(s)	888, 970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.