RLG00000023551

Serine/threonine phosphatases, family 2C, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
25157110 .. 25159229
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023551

Sequence Viewer

Length: 1428 bp
ATGGAAGAACACAGCTCCTCCGGAGTTCGCCTAATCAGTTTTTCCTTAATCCTAGCCCTAATTACGACGACGACAGCCTCTTACGACAAGTCGTCGTCAACGTGTTTGACGCTTTACGAACAAGGCGGTGCTCCCGCGGTTTTCCAATCCCCAAAATGCCCTCGCTGGAAGCGCGCCGATTCCCTCCGGCGTTGCCAGACCGCCGTGCGTCAAGGTCGGAGAAACCACCTCGAGGATCGTGCTCTTTGCGCTCTCGACCTTCGCATTCCCTTTCCTGGTGAATTAGGGATTAAGGAGGTTAAAGTTGGGATTGTGGCTGTTTTTGATGGGCATAATGGTGCTGAAGCAAGTGATATGGCTTCAAAGCTTTTATTGGAGTATTTCGTTTTGCATACCTATTTTCTTCTTGATTATTCTGATGCATCGAATAAATATTCAAGAACAGCAATATTGCAAACTGGTAGAGAACTTTATACTTCAAATGGCGTATTCCGATTGGATATTTCAAGGTTTAATCCTTCTTTGAAAGCAAAGTTTGATGATTCGCGTCATTTTGATATTTTAAAAGAAGCATTGTTGAGAGCAGTTCGTGATATTGATGCAAAATTTTCTATGGAAGCATCTTGGAAAAATCTTGTATCTGGTACTACAGCCTCGATTATATTACTTGCTGATGGTCATATTTTAGTTGCCAATATTGGAGACTCAAAGGCTTTTCTGTGCTCTGAAAAATTTCAGTCTCCTGCAGAGGCTAAAGCCACTTATTTGAGATACAGGCGGGAAAGGCGTAATGGTGCCATATCATCTCCCTTAGGAAACTATAAGAAAAACTTTGAATTGGCTTCCTCCTCCTCTGGGTTGGTGCAGCTTTCTGTTAAGGAATTGACGAGAGATCATCATCCAGACAGAGATGATGAAAAATTCCGCGTGGAAACTGCTGGTGGCTATGTGGTATTGGGTGGTGTGCCTCGAGTAAATGGTCAGCTGGCTATTTCCAGATCTATTGGCGATATTTCCTTCAAAAGTTTCGGCGTTATATCTACACCAGAGTTGACCGACTGGCAACCCCTGAGTGCAAACGATACCTATCTGGTTGCTGCATCTGATGGAGTTTTTGAGAAGCAGAGTCTGCAGGATGTTTGTGATTTATTGTGGGAAGCTCGGAGTTATGATTCTAGGAGATCGGAGTTCTCTTCCTCGCCGTGTTCATACTCATTAGCCGACTGCATCGTGAATGCTGCACTCGACAAGGGCAGCATGGATAATGTGGCAGCTGTTGTCGTTCCAATGATATCTACTTGGTTTTTTGAAAGTTTTTTCATGGAAAGATCAGTTTCAGAGAGGGACAGAAACTGTGAAGCATTAGGATTAGGACTACAAAGTTCCACTGATGAGTGCACAGCTAATGACTTCAATTATGAGTTATGA

Protein Analysis

476

Amino Acids

52.68

Weight (kDa)

5.86

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 184 - 243 2.6e-06 Protein phosphatase 2C
PP2C PF00481 293 - 423 1.3e-23 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 230
AccB1I GGYRCC 1 cut(s) 794
AccII CGCG 4 cut(s) 137, 174, 547, 927
AccIII TCCGGA 1 cut(s) 20
AciI CCGC 6 cut(s) 126, 135, 137, 201, 778, 925
AclWI GGATC 1 cut(s) 243
AcsI RAATTY 3 cut(s) 605, 731, 920
AcuI CTGAAG 1 cut(s) 363
AfaI GTAC 1 cut(s) 646
AfiI CCNNNNNNNGG 3 cut(s) 232, 275, 855
AflIII ACRYGT 1 cut(s) 101
AgsI TTSAA 9 cut(s) 363, 438, 480, 507, 526, 836, 1021, 1310, 1414
AhdI GACNNNNNGTC 1 cut(s) 91
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 7 cut(s) 15, 367, 868, 985, 1160, 1274, 1403
AluI AGCT 7 cut(s) 15, 367, 868, 985, 1160, 1274, 1403
Alw21I GWGCWC 4 cut(s) 133, 244, 725, 1400
Alw26I GTCTC 2 cut(s) 696, 744
Alw44I GTGCAC 1 cut(s) 1396
AlwI GGATC 1 cut(s) 243
AlwNI CAGNNNCTG 2 cut(s) 1129, 1353
Ama87I CYCGRG 2 cut(s) 230, 969
Aor13HI TCCGGA 1 cut(s) 20
ApaLI GTGCAC 1 cut(s) 1396
ApeKI GCWGC 5 cut(s) 865, 1097, 1238, 1254, 1271
ApoI RAATTY 3 cut(s) 605, 731, 920
Asp700I GAANNNNTTC 1 cut(s) 732
AspLEI GCGC 3 cut(s) 174, 176, 251
AsuHPI GGTGA 1 cut(s) 290
AvaI CYCGRG 2 cut(s) 230, 969
AxyI CCTNAGG 1 cut(s) 811
BaeGI GKGCMC 1 cut(s) 1400
BanI GGYRCC 1 cut(s) 794
Bbv12I GWGCWC 4 cut(s) 133, 244, 725, 1400
BbvI GCAGC 5 cut(s) 877, 1084, 1225, 1266, 1283
BccI CCATC 3 cut(s) 320, 668, 1100
BceAI ACGGC 2 cut(s) 188, 1186
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 2 cut(s) 696, 744
BfaI CTAG 2 cut(s) 53, 1176
BfmI CTRYAG 3 cut(s) 648, 744, 1130
BglII AGATCT 1 cut(s) 998
BisI GCNGC 5 cut(s) 866, 1098, 1239, 1255, 1272
BlsI GCNGC 5 cut(s) 867, 1099, 1240, 1256, 1273
Bme1390I CCNGG 1 cut(s) 276
BmeRI GACNNNNNGTC 1 cut(s) 91
BmeT110I CYCGRG 2 cut(s) 230, 969
BmiI GGNNCC 1 cut(s) 796
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 6 cut(s) 409, 431, 589, 629, 1109, 1236
BsaBI GATNNNNATC 2 cut(s) 897, 1086
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 20
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 275, 855
Bse1I ACTGG 2 cut(s) 463, 1064
Bse21I CCTNAGG 1 cut(s) 811
Bse8I GATNNNNATC 2 cut(s) 897, 1086
BseAI TCCGGA 1 cut(s) 20
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 2 cut(s) 898, 1141
BseJI GATNNNNATC 2 cut(s) 897, 1086
BseLI CCNNNNNNNGG 3 cut(s) 232, 275, 855
BseMII CTCAG 1 cut(s) 1061
BseNI ACTGG 2 cut(s) 463, 1064
BsePI GCGCGC 1 cut(s) 172
BseRI GAGGAG 3 cut(s) 7, 838, 841
BseSI GKGCMC 1 cut(s) 1400
BseXI GCAGC 5 cut(s) 877, 1084, 1225, 1266, 1283
BsgI GTGCAG 2 cut(s) 884, 1224
Bsh1236I CGCG 4 cut(s) 137, 174, 547, 927
BshNI GGYRCC 1 cut(s) 794
BsiHKAI GWGCWC 4 cut(s) 133, 244, 725, 1400
BsiHKCI CYCGRG 2 cut(s) 230, 969
BsiSI CCGG 2 cut(s) 21, 187
BslFI GGGAC 1 cut(s) 1358
BslI CCNNNNNNNGG 3 cut(s) 232, 275, 855
BsmAI GTCTC 2 cut(s) 696, 744
BsmFI GGGAC 1 cut(s) 1358
BsmI GAATGC 2 cut(s) 264, 1240
BsoBI CYCGRG 2 cut(s) 230, 969
Bsp1286I GDGCHC 4 cut(s) 133, 244, 725, 1400
Bsp13I TCCGGA 1 cut(s) 20
Bsp143I GATC 5 cut(s) 235, 892, 998, 1181, 1328
BspACI CCGC 6 cut(s) 126, 135, 137, 201, 778, 925
BspCNI CTCAG 1 cut(s) 1062
BspEI TCCGGA 1 cut(s) 20
BspFNI CGCG 4 cut(s) 137, 174, 547, 927
BspLI GGNNCC 1 cut(s) 796
BspMAI CTGCAG 2 cut(s) 748, 1134
BspPI GGATC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 794
BsrI ACTGG 2 cut(s) 463, 1064
BssECI CCNNGG 1 cut(s) 135
BssHII GCGCGC 1 cut(s) 172
BssMI GATC 5 cut(s) 235, 892, 998, 1181, 1328
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 1355
Bst6I CTCTTC 1 cut(s) 1198
BstAPI GCANNNNNTGC 1 cut(s) 1129
BstC8I GCNNGC 2 cut(s) 174, 987
BstDEI CTNAG 2 cut(s) 811, 1070
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 898, 1141
BstFNI CGCG 4 cut(s) 137, 174, 547, 927
BstHHI GCGC 3 cut(s) 174, 176, 251
BstKTI GATC 5 cut(s) 238, 895, 1001, 1184, 1331
BstMAI GTCTC 2 cut(s) 696, 744
BstMBI GATC 5 cut(s) 235, 892, 998, 1181, 1328
BstMWI GCNNNNNNNGC 4 cut(s) 171, 248, 784, 1129
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 3 cut(s) 648, 744, 1130
BstSLI GKGCMC 1 cut(s) 1400
BstUI CGCG 4 cut(s) 137, 174, 547, 927
BstV1I GCAGC 5 cut(s) 877, 1084, 1225, 1266, 1283
BstX2I RGATCY 1 cut(s) 998
BstYI RGATCY 1 cut(s) 998
Bsu36I CCTNAGG 1 cut(s) 811
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 898, 1141
BtsIMutI CAGTG 1 cut(s) 1386
Cac8I GCNNGC 2 cut(s) 174, 987
CaiI CAGNNNCTG 2 cut(s) 1129, 1353
CfoI GCGC 3 cut(s) 174, 176, 251
Cfr42I CCGCGG 1 cut(s) 138
CseI GACGC 3 cut(s) 118, 197, 536
Csp6I GTAC 1 cut(s) 645
CviAII CATG 2 cut(s) 1258, 1321
CviQI GTAC 1 cut(s) 645
DdeI CTNAG 2 cut(s) 811, 1070
DpnI GATC 5 cut(s) 237, 894, 1000, 1183, 1330
DpnII GATC 5 cut(s) 235, 892, 998, 1181, 1328
DraI TTTAAA 1 cut(s) 564
DriI GACNNNNNGTC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 1198
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 1198
Eco32I GATATC 1 cut(s) 1293
Eco57I CTGAAG 1 cut(s) 363
Eco81I CCTNAGG 1 cut(s) 811
Eco88I CYCGRG 2 cut(s) 230, 969
EcoRII CCWGG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 1293
EcoT22I ATGCAT 1 cut(s) 424
FaeI CATG 2 cut(s) 1261, 1324
FalI AAGNNNNNCTT 2 cut(s) 815, 847
FaqI GGGAC 1 cut(s) 1358
FatI CATG 2 cut(s) 1257, 1320
FauI CCCGC 2 cut(s) 142, 771
Fnu4HI GCNGC 5 cut(s) 866, 1098, 1239, 1255, 1272
FokI GGATG 2 cut(s) 885, 1148
Fsp4HI GCNGC 5 cut(s) 866, 1098, 1239, 1255, 1272
FspBI CTAG 2 cut(s) 53, 1176
GlaI GCGC 3 cut(s) 173, 175, 250
GluI GCNGC 5 cut(s) 866, 1098, 1239, 1255, 1272
HapII CCGG 2 cut(s) 21, 187
HgaI GACGC 3 cut(s) 118, 197, 536
HhaI GCGC 3 cut(s) 174, 176, 251
Hin1II CATG 2 cut(s) 1261, 1324
Hin6I GCGC 3 cut(s) 172, 174, 249
HinP1I GCGC 3 cut(s) 172, 174, 249
HincII GTYRAC 2 cut(s) 99, 1053
HindII GTYRAC 2 cut(s) 99, 1053
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 5 cut(s) 179, 542, 704, 1126, 1172
HpaII CCGG 2 cut(s) 21, 187
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 3 cut(s) 99, 1053, 1398
Hpy188I TCNGA 8 cut(s) 219, 418, 494, 727, 1105, 1164, 1186, 1339
Hpy188III TCNNGA 8 cut(s) 21, 254, 407, 438, 590, 902, 996, 1231
Hpy8I GTNNAC 3 cut(s) 99, 1053, 1398
Hpy99I CGWCG 3 cut(s) 70, 73, 97
HpyAV CCTTC 3 cut(s) 269, 528, 1027
HpyCH4III ACNGT 1 cut(s) 1355
HpyCH4IV ACGT 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 4 cut(s) 171, 248, 784, 1129
HpyF3I CTNAG 2 cut(s) 811, 1070
HpySE526I ACGT 1 cut(s) 101
Hsp92II CATG 2 cut(s) 1261, 1324
HspAI GCGC 3 cut(s) 172, 174, 249
Kpn2I TCCGGA 1 cut(s) 20
KspI CCGCGG 1 cut(s) 138
Kzo9I GATC 5 cut(s) 235, 892, 998, 1181, 1328
LmnI GCTCC 2 cut(s) 20, 136
Lsp1109I GCAGC 5 cut(s) 877, 1084, 1225, 1266, 1283
LweI GCATC 6 cut(s) 409, 431, 589, 629, 1109, 1236
MaeI CTAG 2 cut(s) 53, 1176
MaeII ACGT 1 cut(s) 101
MalI GATC 5 cut(s) 237, 894, 1000, 1183, 1330
MboI GATC 5 cut(s) 235, 892, 998, 1181, 1328
MboII GAAGA 3 cut(s) 17, 395, 1185
MflI RGATCY 1 cut(s) 998
MhlI GDGCHC 4 cut(s) 133, 244, 725, 1400
MluCI AATT 8 cut(s) 60, 281, 605, 731, 836, 881, 920, 1414
MlyI GAGTC 2 cut(s) 698, 1135
MmeI TCCRAC 1 cut(s) 197
Mph1103I ATGCAT 1 cut(s) 424
MroI TCCGGA 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 732
MseI TTAA 6 cut(s) 47, 291, 300, 513, 563, 876
MslI CAYNNNNRTG 1 cut(s) 336
MspA1I CMGCKG 3 cut(s) 137, 985, 1274
MspI CCGG 2 cut(s) 21, 187
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 2 cut(s) 264, 1240
MvaI CCWGG 1 cut(s) 276
MvnI CGCG 4 cut(s) 137, 174, 547, 927
MwoI GCNNNNNNNGC 4 cut(s) 171, 248, 784, 1129
NdeII GATC 5 cut(s) 235, 892, 998, 1181, 1328
NlaIII CATG 2 cut(s) 1261, 1324
NlaIV GGNNCC 1 cut(s) 796
NsiI ATGCAT 1 cut(s) 424
PaeR7I CTCGAG 2 cut(s) 230, 969
PauI GCGCGC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PctI GAATGC 2 cut(s) 264, 1240
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 3 cut(s) 179, 542, 1172
PkrI GCNGC 5 cut(s) 867, 1099, 1240, 1256, 1273
PleI GAGTC 2 cut(s) 698, 1134
PpsI GAGTC 2 cut(s) 698, 1134
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 796
PspXI VCTCGAGB 2 cut(s) 230, 969
PstI CTGCAG 2 cut(s) 748, 1134
PstNI CAGNNNCTG 2 cut(s) 1129, 1353
PsuI RGATCY 1 cut(s) 998
PteI GCGCGC 1 cut(s) 172
PvuII CAGCTG 2 cut(s) 985, 1274
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
RseI CAYNNNNRTG 1 cut(s) 336
SacII CCGCGG 1 cut(s) 138
SaqAI TTAA 6 cut(s) 47, 291, 300, 513, 563, 876
SatI GCNGC 5 cut(s) 866, 1098, 1239, 1255, 1272
Sau3AI GATC 5 cut(s) 235, 892, 998, 1181, 1328
SchI GAGTC 2 cut(s) 698, 1135
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 4 cut(s) 133, 244, 725, 1400
SfaNI GCATC 6 cut(s) 409, 431, 589, 629, 1109, 1236
SfcI CTRYAG 3 cut(s) 648, 744, 1130
Sfr274I CTCGAG 2 cut(s) 230, 969
Sfr303I CCGCGG 1 cut(s) 138
SgrBI CCGCGG 1 cut(s) 138
SlaI CTCGAG 2 cut(s) 230, 969
SmiMI CAYNNNNRTG 1 cut(s) 336
SmlI CTYRAG 2 cut(s) 230, 969
SmoI CTYRAG 2 cut(s) 230, 969
Sse9I AATT 8 cut(s) 60, 281, 605, 731, 836, 881, 920, 1414
SsiI CCGC 6 cut(s) 126, 135, 137, 201, 778, 925
SspI AATATT 3 cut(s) 434, 450, 697
SspMI CTAG 2 cut(s) 53, 1176
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 1 cut(s) 1355
TaiI ACGT 1 cut(s) 104
TaqI TCGA 6 cut(s) 231, 255, 425, 656, 970, 1245
TaqII GACCGA 1 cut(s) 1070
TasI AATT 8 cut(s) 60, 281, 605, 731, 836, 881, 920, 1414
TfiI GAWTC 3 cut(s) 179, 542, 1172
Tru1I TTAA 6 cut(s) 47, 291, 300, 513, 563, 876
Tru9I TTAA 6 cut(s) 47, 291, 300, 513, 563, 876
TscAI CASTG 1 cut(s) 1393
TseI GCWGC 5 cut(s) 865, 1097, 1238, 1254, 1271
TspDTI ATGAA 3 cut(s) 930, 1197, 1309
TspRI CASTG 1 cut(s) 1393
VneI GTGCAC 1 cut(s) 1396
XapI RAATTY 3 cut(s) 605, 731, 920
XhoI CTCGAG 2 cut(s) 230, 969
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 2 cut(s) 53, 1176
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.