Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Forward (+)

17819044 .. 17819487

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCATATATATAAAGGAATTTCAGAAGGGATGGGAAGCGACGGTGGAAGCGAAAGAGAACAGCAGCGGCGGACAATGGAGTGCTCCGGAGTCCTCCACCTAATCGTACTGGGATTACTATTCGCCGGCCTTCCGACGCTCTCCTACGGAAGAGAATCGTCCTCAACGTGCTTGGCGCTGTACGAACATGGTGGCGCTCCGGCGGTTTTTGAATCCCCAGAATGCCGTCAATTGAAGCACTCCAACGACTCCCAACGCACGTCGCTTTGTCAAACGGCCATGCTTCAAGGTCGAAGAAAGTACTTGGAGGATCGCATTCTCTGCGCTCTCGACGTTCGCATTCCCTTTCCTGGTCCGTCTCTCTCTGTATGTATTCTCTATATAATTAGGGTTTTCTTTAATCGTCTGAAGCTCCTGGATTATAATGCAGTTGGTATATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

148

Amino Acids

16.34

Weight (kDa)

8.19

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	3 cut(s)	67, 70, 203
AclWI	GGATC	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	276
AcsI	RAATTY	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	428
AfaI	GTAC	3 cut(s)	108, 182, 302
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	212, 235, 287
AjiI	CACGTC	1 cut(s)	261
AjnI	CCWGG	2 cut(s)	349, 414
AluBI	AGCT	1 cut(s)	412
AluI	AGCT	1 cut(s)	412
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	318
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	2 cut(s)	127, 276
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	18
AspLEI	GCGC	3 cut(s)	178, 197, 326
AspS9I	GGNCC	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	353
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	2 cut(s)	210, 291
BciT130I	CCWGG	2 cut(s)	351, 416
BcoDI	GTCTC	1 cut(s)	363
BfoI	RGCGCY	2 cut(s)	179, 198
BisI	GCNGC	2 cut(s)	65, 68
BlsI	GCNGC	2 cut(s)	66, 69
BmcAI	AGTACT	1 cut(s)	302
Bme1390I	CCNGG	2 cut(s)	351, 416
Bme18I	GGWCC	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	353
BmrFI	CCNGG	2 cut(s)	351, 416
BmrI	ACTGGG	1 cut(s)	119
BmuI	ACTGGG	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse118I	RCCGGY	1 cut(s)	125
Bse1I	ACTGG	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	351, 416
BseGI	GGATG	1 cut(s)	36
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseNI	ACTGG	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	2 cut(s)	129, 278
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	87, 126, 200
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	363
BsmBI	CGTCTC	1 cut(s)	363
BsmI	GAATGC	3 cut(s)	227, 315, 339
BsnI	GGCC	2 cut(s)	129, 278
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	3 cut(s)	67, 70, 203
BspANI	GGCC	2 cut(s)	129, 278
BspEI	TCCGGA	1 cut(s)	86
BspPI	GGATC	1 cut(s)	318
BsrFI	RCCGGY	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	1 cut(s)	125
BssMI	GATC	1 cut(s)	310
Bst2UI	CCWGG	2 cut(s)	351, 416
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	36
BstH2I	RGCGCY	2 cut(s)	179, 198
BstHHI	GCGC	3 cut(s)	178, 197, 326
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstNI	CCWGG	2 cut(s)	351, 416
BstSCI	CCNGG	2 cut(s)	349, 414
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	129, 278
BtrI	CACGTC	1 cut(s)	261
BtsCI	GGATG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	3 cut(s)	178, 197, 326
Cfr10I	RCCGGY	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	353
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	3 cut(s)	107, 181, 301
CviAII	CATG	2 cut(s)	188, 280
CviJI	RGCY	3 cut(s)	129, 278, 412
CviKI_1	RGCY	3 cut(s)	129, 278, 412
CviQI	GTAC	3 cut(s)	107, 181, 301
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	428
EcoRII	CCWGG	2 cut(s)	349, 414
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	363
FaeI	CATG	2 cut(s)	191, 283
FatI	CATG	2 cut(s)	187, 279
Fnu4HI	GCNGC	2 cut(s)	65, 68
FokI	GGATG	1 cut(s)	43
Fsp4HI	GCNGC	2 cut(s)	65, 68
GlaI	GCGC	3 cut(s)	177, 196, 325
GluI	GCNGC	2 cut(s)	65, 68
HaeII	RGCGCY	2 cut(s)	179, 198
HaeIII	GGCC	2 cut(s)	129, 278
HapII	CCGG	3 cut(s)	87, 126, 200
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	3 cut(s)	178, 197, 326
Hin1II	CATG	2 cut(s)	191, 283
Hin6I	GCGC	3 cut(s)	176, 195, 324
HinP1I	GCGC	3 cut(s)	176, 195, 324
HinfI	GANTC	4 cut(s)	90, 155, 212, 248
HpaII	CCGG	3 cut(s)	87, 126, 200
Hpy188I	TCNGA	3 cut(s)	25, 135, 408
Hpy188III	TCNNGA	2 cut(s)	87, 329
Hpy99I	CGWCG	4 cut(s)	44, 139, 265, 335
HpyAV	CCTTC	2 cut(s)	20, 140
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	3 cut(s)	167, 260, 333
HpyCH4V	TGCA	2 cut(s)	4, 428
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpySE526I	ACGT	3 cut(s)	167, 260, 333
Hsp92II	CATG	2 cut(s)	191, 283
HspAI	GCGC	3 cut(s)	176, 195, 324
Kpn2I	TCCGGA	1 cut(s)	86
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	3 cut(s)	89, 202, 417
LpnPI	CCDG	9 cut(s)	95, 100, 139, 213, 231, 336, 363, 401, 428
Lsp1109I	GCAGC	1 cut(s)	76
MaeII	ACGT	3 cut(s)	167, 260, 333
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	2 cut(s)	162, 306
MfeI	CAATTG	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	3 cut(s)	18, 230, 384
MlyI	GAGTC	2 cut(s)	99, 242
MmeI	TCCRAC	2 cut(s)	158, 267
MnlI	CCTC	3 cut(s)	104, 172, 301
Mph1103I	ATGCAT	1 cut(s)	6
MroI	TCCGGA	1 cut(s)	86
MroNI	GCCGGC	1 cut(s)	125
MseI	TTAA	1 cut(s)	399
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	3 cut(s)	87, 126, 200
MspR9I	CCNGG	2 cut(s)	351, 416
MunI	CAATTG	1 cut(s)	230
Mva1269I	GAATGC	3 cut(s)	227, 315, 339
MvaI	CCWGG	2 cut(s)	351, 416
MwoI	GCNNNNNNNGC	1 cut(s)	321
NaeI	GCCGGC	1 cut(s)	127
NdeII	GATC	1 cut(s)	310
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	2 cut(s)	191, 283
NsiI	ATGCAT	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 164
PctI	GAATGC	3 cut(s)	227, 315, 339
PdiI	GCCGGC	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	155, 212
PfoI	TCCNGGA	1 cut(s)	414
PkrI	GCNGC	2 cut(s)	66, 69
PleI	GAGTC	2 cut(s)	98, 242
PpsI	GAGTC	2 cut(s)	98, 242
PsiI	TTATAA	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	349, 414
PspGI	CCWGG	2 cut(s)	349, 414
PspPI	GGNCC	1 cut(s)	353
RsaI	GTAC	3 cut(s)	108, 182, 302
RsaNI	GTAC	3 cut(s)	107, 181, 301
SaqAI	TTAA	1 cut(s)	399
SatI	GCNGC	2 cut(s)	65, 68
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	353
ScaI	AGTACT	1 cut(s)	302
SchI	GAGTC	2 cut(s)	99, 242
ScrFI	CCNGG	2 cut(s)	351, 416
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	6 cut(s)	102, 170, 263, 292, 336, 414
SinI	GGWCC	1 cut(s)	353
Sse9I	AATT	3 cut(s)	18, 230, 384
SsiI	CCGC	3 cut(s)	67, 70, 203
StyD4I	CCNGG	2 cut(s)	349, 414
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	3 cut(s)	170, 263, 336
TaqI	TCGA	2 cut(s)	292, 330
TasI	AATT	3 cut(s)	18, 230, 384
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	2 cut(s)	155, 212
Tru1I	TTAA	1 cut(s)	399
Tru9I	TTAA	1 cut(s)	399
TseI	GCWGC	1 cut(s)	64
TspGWI	ACGGA	2 cut(s)	162, 345
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	18
ZrmI	AGTACT	1 cut(s)	302
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.