RLG00000029889

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000935
Physical Location & Seq
Forward (+)
50796313 .. 50797872
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029889

Sequence Viewer

Length: 423 bp
ATGGGAGGTGGCTGGATCCCGATCTGCTTTCCTTCCAAGCAGTGTCGCCGACTTCTCTTGGATGCTTCGATCTGGTTTTCGGGTGAACTCTTTTTGAGTTTTGCTTGGTTTCCAGTTTTGGAATTCCTGATGGTTGGAGACGCTCCATTCCCGGCATCCGAGATCGGCAGCGACGAGGTTCTGGGGGTGCGACAGGGTTCTGGTGGAGCTAGTTCTGCGGCGGCGGCACTAGTTCTGCACACTTTGCTTCGAAAAACCAGGTTCATGATGCTAAGGCAACAGGAATTGGACGAAGCATTTCTTGCATCAGTTGAAGAAATGAAGATCCGTGATGAAATGCTTAAAGACTTCCTCGACCGGAATGTAAAGGACACATTCACATTTGGTCTAAAAACATTATACAAATATTCTCGAAGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.78

Weight (kDa)

5.84

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 421
AciI CCGC 3 cut(s) 218, 221, 224
AclWI GGATC 3 cut(s) 10, 23, 319
AcsI RAATTY 1 cut(s) 122
AgsI TTSAA 1 cut(s) 314
AhlI ACTAGT 1 cut(s) 229
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 2 cut(s) 209, 417
AluI AGCT 2 cut(s) 209, 417
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 3 cut(s) 10, 23, 319
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 1 cut(s) 122
Asp700I GAANNNNTTC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 250
BamHI GGATCC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 180
BccI CCATC 1 cut(s) 124
BciT130I CCWGG 1 cut(s) 259
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 1 cut(s) 132
BcuI ACTAGT 1 cut(s) 229
BfaI CTAG 2 cut(s) 210, 230
BisI GCNGC 4 cut(s) 169, 219, 222, 225
BlsI GCNGC 4 cut(s) 170, 220, 223, 226
Bme1390I CCNGG 2 cut(s) 152, 259
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 2 cut(s) 152, 259
BmsI GCATC 4 cut(s) 52, 164, 258, 314
Bpu10I CCTNAGC 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 250
BpuMI CCSGG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 20
BsaWI WCCGGW 1 cut(s) 357
Bse1I ACTGG 1 cut(s) 113
Bse8I GATNNNNATC 1 cut(s) 20
BseBI CCWGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 67, 155
BseJI GATNNNNATC 1 cut(s) 20
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 221
Bsh1285I CGRYCG 1 cut(s) 358
BsiEI CGRYCG 1 cut(s) 358
BsiSI CCGG 2 cut(s) 152, 358
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
Bsp119I TTCGAA 1 cut(s) 250
Bsp143I GATC 5 cut(s) 15, 21, 69, 162, 324
BspACI CCGC 3 cut(s) 218, 221, 224
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 17
BspPI GGATC 3 cut(s) 10, 23, 319
BspT104I TTCGAA 1 cut(s) 250
BsrI ACTGG 1 cut(s) 113
BssMI GATC 5 cut(s) 15, 21, 69, 162, 324
Bst2UI CCWGG 1 cut(s) 259
BstAPI GCANNNNNTGC 2 cut(s) 244, 302
BstBI TTCGAA 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 272
BstF5I GGATG 2 cut(s) 67, 155
BstKTI GATC 5 cut(s) 18, 24, 72, 165, 327
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 5 cut(s) 15, 21, 69, 162, 324
BstMCI CGRYCG 1 cut(s) 358
BstMWI GCNNNNNNNGC 4 cut(s) 215, 224, 244, 302
BstNI CCWGG 1 cut(s) 259
BstSCI CCNGG 2 cut(s) 150, 257
BstV1I GCAGC 1 cut(s) 180
BstX2I RGATCY 2 cut(s) 15, 324
BstYI RGATCY 2 cut(s) 15, 324
BtsCI GGATG 2 cut(s) 67, 155
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 47
CciI TCATGA 1 cut(s) 264
CseI GACGC 1 cut(s) 149
CsiI ACCWGGT 1 cut(s) 257
CviAII CATG 1 cut(s) 265
CviJI RGCY 3 cut(s) 12, 209, 417
CviKI_1 RGCY 3 cut(s) 12, 209, 417
DdeI CTNAG 1 cut(s) 272
DpnI GATC 5 cut(s) 17, 23, 71, 164, 326
DpnII GATC 5 cut(s) 15, 21, 69, 162, 324
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 257
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 1 cut(s) 268
FaiI YATR 3 cut(s) 266, 400, 421
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 4 cut(s) 169, 219, 222, 225
FokI GGATG 2 cut(s) 74, 142
Fsp4HI GCNGC 4 cut(s) 169, 219, 222, 225
FspBI CTAG 2 cut(s) 210, 230
GluI GCNGC 4 cut(s) 169, 219, 222, 225
HapII CCGG 2 cut(s) 152, 358
HgaI GACGC 1 cut(s) 149
Hin1II CATG 1 cut(s) 268
HindIII AAGCTT 1 cut(s) 415
HpaII CCGG 2 cut(s) 152, 358
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 4 cut(s) 19, 127, 265, 411
Hpy8I GTNNAC 1 cut(s) 86
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 1 cut(s) 42
HpyCH4V TGCA 2 cut(s) 238, 305
HpyF10VI GCNNNNNNNGC 4 cut(s) 215, 224, 244, 302
HpyF3I CTNAG 1 cut(s) 272
Hsp92II CATG 1 cut(s) 268
Kzo9I GATC 5 cut(s) 15, 21, 69, 162, 324
LmnI GCTCC 2 cut(s) 148, 206
Lsp1109I GCAGC 1 cut(s) 180
LweI GCATC 4 cut(s) 52, 164, 258, 314
MabI ACCWGGT 1 cut(s) 257
MaeI CTAG 2 cut(s) 210, 230
MalI GATC 5 cut(s) 17, 23, 71, 164, 326
MboI GATC 5 cut(s) 15, 21, 69, 162, 324
MboII GAAGA 2 cut(s) 326, 334
MflI RGATCY 2 cut(s) 15, 324
MluCI AATT 2 cut(s) 122, 284
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 2 cut(s) 169, 362
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 1 cut(s) 342
MspI CCGG 2 cut(s) 152, 358
MspR9I CCNGG 2 cut(s) 152, 259
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 4 cut(s) 215, 224, 244, 302
NciI CCSGG 1 cut(s) 152
NdeII GATC 5 cut(s) 15, 21, 69, 162, 324
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 1 cut(s) 17
NspV TTCGAA 1 cut(s) 250
PagI TCATGA 1 cut(s) 264
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 297
PkrI GCNGC 4 cut(s) 170, 220, 223, 226
PsiI TTATAA 1 cut(s) 421
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 17
PsuI RGATCY 2 cut(s) 15, 324
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 4 cut(s) 169, 219, 222, 225
Sau3AI GATC 5 cut(s) 15, 21, 69, 162, 324
ScrFI CCNGG 2 cut(s) 152, 259
SetI ASST 5 cut(s) 10, 180, 211, 263, 419
SexAI ACCWGGT 1 cut(s) 257
SfaNI GCATC 4 cut(s) 52, 164, 258, 314
SfuI TTCGAA 1 cut(s) 250
SpeI ACTAGT 1 cut(s) 229
Sse9I AATT 2 cut(s) 122, 284
SsiI CCGC 3 cut(s) 218, 221, 224
SspI AATATT 1 cut(s) 407
SspMI CTAG 2 cut(s) 210, 230
StyD4I CCNGG 2 cut(s) 150, 257
TaqI TCGA 4 cut(s) 68, 250, 354, 412
TasI AATT 2 cut(s) 122, 284
TauI GCSGC 3 cut(s) 221, 224, 227
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 47
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 3 cut(s) 253, 335, 348
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 47
XapI RAATTY 1 cut(s) 122
XmnI GAANNNNTTC 1 cut(s) 297
XspI CTAG 2 cut(s) 210, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.