Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Reverse (-)

25162368 .. 25162901

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAACACAGCTCCTCCGGAGTTCGCCTAATCAGTTTTTGCTTAAATCTAGCCCTAATTACGACGACAACGACAGCCTCTTACGACGAGTCGTCGTCGACGTGTTTGACGCTTTACGAACAAGACGGTGCTCCCGCGGTTTTTCAATCCCCAAAATGCCCTCGCTGGAAGCACACCGATTCCCTCCGGCGTTGCCAAACCGCAATGCGTCAAGGTCGGAGAAACCACCTCGAGGATCGTGCTCTGTGCGCTCTCGACCTTTGCATTCCCTTTCCTAGTGAATTAGGGATTAAGGAGGTTAAAGTTGGGATTGTGGCTGTTTTTGAAGGGCATAATGGTGCTGAAGCAAGTGATATGGCTTCAAGGCTTTTTATTGGAGTATTTCGTTTTGCATACCTATTTTCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

137

Amino Acids

15.05

Weight (kDa)

6.88

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	98
AccII	CGCG	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	3 cut(s)	135, 137, 201
AclWI	GGATC	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	3 cut(s)	146, 326, 363
AhdI	GACNNNNNGTC	1 cut(s)	91
AjiI	CACGTC	1 cut(s)	102
AluBI	AGCT	1 cut(s)	12
AluI	AGCT	1 cut(s)	12
Alw21I	GWGCWC	2 cut(s)	133, 244
AlwI	GGATC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	230
Bbv12I	GWGCWC	2 cut(s)	133, 244
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BfaI	CTAG	2 cut(s)	50, 276
BmeRI	GACNNNNNGTC	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	230
BmgBI	CACGTC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse3DI	GCAATG	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMI	GCAATG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	137
BsiHKAI	GWGCWC	2 cut(s)	133, 244
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	18, 187
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	264
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	2 cut(s)	133, 244
Bsp13I	TCCGGA	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	3 cut(s)	135, 137, 201
BspEI	TCCGGA	1 cut(s)	17
BspFNI	CGCG	1 cut(s)	137
BspPI	GGATC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstUI	CGCG	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	251
Cfr42I	CCGCGG	1 cut(s)	138
CseI	GACGC	2 cut(s)	118, 197
CviJI	RGCY	6 cut(s)	12, 53, 77, 317, 359, 367
CviKI_1	RGCY	6 cut(s)	12, 53, 77, 317, 359, 367
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
DriI	GACNNNNNGTC	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	230
FaiI	YATR	3 cut(s)	333, 356, 394
FauI	CCCGC	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	98
FspBI	CTAG	2 cut(s)	50, 276
GlaI	GCGC	1 cut(s)	250
HapII	CCGG	2 cut(s)	18, 187
HgaI	GACGC	2 cut(s)	118, 197
HhaI	GCGC	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	2 cut(s)	89, 179
HpaII	CCGG	2 cut(s)	18, 187
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	3 cut(s)	18, 254, 408
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	5 cut(s)	67, 89, 97, 100, 103
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	2 cut(s)	264, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	101
HspAI	GCGC	1 cut(s)	249
Kpn2I	TCCGGA	1 cut(s)	17
KspI	CCGCGG	1 cut(s)	138
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	2 cut(s)	17, 136
LpnPI	CCDG	3 cut(s)	31, 151, 200
MaeI	CTAG	2 cut(s)	50, 276
MaeII	ACGT	1 cut(s)	101
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	1 cut(s)	396
MhlI	GDGCHC	2 cut(s)	133, 244
MluCI	AATT	2 cut(s)	57, 281
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	197
MnlI	CCTC	7 cut(s)	25, 88, 171, 194, 226, 239, 289
MroI	TCCGGA	1 cut(s)	17
MseI	TTAA	3 cut(s)	44, 291, 300
MslI	CAYNNNNRTG	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	137
MspI	CCGG	2 cut(s)	18, 187
Mva1269I	GAATGC	1 cut(s)	264
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	1 cut(s)	235
PaeR7I	CTCGAG	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 98
PctI	GAATGC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PspXI	VCTCGAGB	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	336
SacII	CCGCGG	1 cut(s)	138
SalI	GTCGAC	1 cut(s)	97
SaqAI	TTAA	3 cut(s)	44, 291, 300
Sau3AI	GATC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	98
SduI	GDGCHC	2 cut(s)	133, 244
SetI	ASST	7 cut(s)	14, 104, 217, 231, 261, 300, 399
Sfr274I	CTCGAG	1 cut(s)	230
Sfr303I	CCGCGG	1 cut(s)	138
SgrBI	CCGCGG	1 cut(s)	138
SgrDI	CGTCGACG	1 cut(s)	97
SlaI	CTCGAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	57, 281
SsiI	CCGC	3 cut(s)	135, 137, 201
SspMI	CTAG	2 cut(s)	50, 276
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	98, 231, 255
TasI	AATT	2 cut(s)	57, 281
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	3 cut(s)	44, 291, 300
Tru9I	TTAA	3 cut(s)	44, 291, 300
XhoI	CTCGAG	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	2 cut(s)	50, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.