Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Forward (+)

33312339 .. 33322719

Gene Structure 10381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0209000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1833 bp

ATGGCGGATCAGGAGGAGGACCTGCAAATGGCACTGAGGATGAGTATGCAGAATTCGCCGCCGGAGCCGAAGCGGAACAAGCCCAGGGACGCCGATTCGCCGGCGGAGGAGTCGTCGGAAGTCAAGACCCGGCGACTTCAGCGAGAGCTCATGGCTACTGCAGCCGAGAGGAGAATGCTCGACGCCAGGGCCAACGCTCCTCCTACTCCTCCTCCGGCTGCCTCACCGGTCTCCTTTTCCAGGTCTGCGGCGGGTTCGGGTTCGGGTTCCGCGCCCAATGTGGTTATGAAGGAGAGGGAATTGGGCGCGGAGTTGAGCGTGGCGGATGCCAAGCAGTTGTTTTCGATGGTGTTTGGGGCTGAGGTTTCCAAGGGCATTCTTGCGCAGTGGAGTAATCAGGGTATAAGGTTTAGCCCTGATCCAGAAACATCGATGGGTCTAGTGCAGCATGAAGGTGGGCCCTGTGGCGTTTTAGCAGCCATTCAAGCACTTGTTCTCAAATACCTCCTTTTCTACCCAGACGGACTAGGTAAAGGTGCACCAAACATGCATCACAATTTGGGTTCAAGGACACTTTCTAGTCATTGTGTTGCAGCGACTAACTTTTCCTCACTTTCTGAAGATGCAAAAGCAAGAGCATTGCTTAGAAGTATGGGTGAGATATTGTTCTCATGTGGAAGTAATAAAAGGGCGGTGGTTGCAACTTTGAGTGTTATTGGAGATGACGTTGAGAGGTTTGAAGGCAGCAAGGATGAAGTAATAGCAAAATCACTTGAGGGCCTTTCTATTGAATCAGCTGCTGACTTGCATAAAGTGCTAAGAGTTAACACATACACGACGCAAGAAAGTGCATTACGGGGGCTAGAAGCAGTGATTCCTGTTTTCCGAAGTCGTATGGGGGCATTGCTGTTCCTTATTTCTGCTTTGCTTTCACGAGGACTGGACTTAATCCAGGCTGATAGGGATGATCCCAGCCTACCTCTTGTCACTGCTCCATTTGGGCATGCCTCACAGGAAATTGTGAACTTACTGCTCTGCGGGCAGGCTGTCCCAAATGTTTTCGACGGAAAGATGGATTTAGGTGGTGGTATGTCTTTAAAGGGCATATCCAGAACCGTGGAAGTTGGATTCCTCACACTGTTGGAGTCCCTTAATTTCTGCAAAGTTGGCCAGTATTTGAAATGCCCCAAATGGCCAATTTGGGTAGTTGGAAGTGAGTCTCATTATACAGTTCTCTTTGCTCCTGATACCAATGTCCAGGATGAGAATGAACTGGAAGGAAGGGAATCACAGATTCGGAAAGCTTTTGATGCACAAGATCAGAGTGGGGGTGGTGGTTTCATTAGTGTTGAAGGCTTTCATCAAGTCCTTAGGGAAACTAATGTAAAAGTTCCAAGTGAGAAGGTTGATCTTCTTTGCAGCACAGGATTTATTGTATGGAGTGAGTTCTGGCAGGTCATTTTGGATCTGGACAAGAGCATGGGAGGCCTCAAGGATTCAACTGGATTAATGGGCAAGAAGGTCTTTGATCTTTACCATTTTAATGGAATTGCAAAATCAGATCTGAATGGAAGCCAGGTAAGCTCTGGAGGCGAGACTCCAGTGCAAAGACCTAGGCTCACAAAATTGAGGGTGTCAGTTCCTCCAAGATGGACTCCTGAAGAATATATGACAGATGTAGCAGTGTCCTCTAGTGGGAATGAATCCAAAGGTCAAGTCACAGAAGTTTCTAAGCCAGAGCCTCCTCAGCATGCACCTTTGGTGGACTGCATAAGAACACGCTGGCCCCGTGCTGTTTGCAATTGGGTTGGGGATTCGCCTAGTATTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

610

Amino Acids

66.01

Weight (kDa)

5.65

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MINDY-3_4_CD	PF13898	116 - 422	1.3e-57	Deubiquitinating enzyme MINDY-3/4, conserved domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	384
Acc36I	ACCTGC	2 cut(s)	30, 1444
AccII	CGCG	2 cut(s)	272, 308
AclWI	GGATC	4 cut(s)	15, 413, 962, 1473
AcoI	YGGCCR	2 cut(s)	1168, 1193
AcsI	RAATTY	1 cut(s)	52
AcuI	CTGAAG	3 cut(s)	122, 639, 1680
AcyI	GRCGYC	2 cut(s)	90, 183
AfiI	CCNNNNNNNGG	3 cut(s)	28, 240, 1695
AgeI	ACCGGT	1 cut(s)	226
AgsI	TTSAA	7 cut(s)	485, 567, 740, 791, 1180, 1352, 1500
AjnI	CCWGG	6 cut(s)	83, 185, 239, 951, 1257, 1575
AluBI	AGCT	4 cut(s)	148, 797, 1304, 1584
AluI	AGCT	4 cut(s)	148, 797, 1304, 1584
Alw21I	GWGCWC	2 cut(s)	150, 541
Alw26I	GTCTC	3 cut(s)	235, 1224, 1589
Alw44I	GTGCAC	1 cut(s)	537
AlwI	GGATC	4 cut(s)	15, 413, 962, 1473
AlwNI	CAGNNNCTG	1 cut(s)	800
AoxI	GGCC	7 cut(s)	189, 458, 778, 1168, 1193, 1486, 1784
ApaI	GGGCCC	1 cut(s)	462
ApaLI	GTGCAC	1 cut(s)	537
ApeKI	GCWGC	8 cut(s)	161, 218, 445, 476, 593, 744, 797, 1419
ApoI	RAATTY	1 cut(s)	52
ArsI	GACNNNNNNTTYG	2 cut(s)	1701, 1733
AseI	ATTAAT	1 cut(s)	1508
AsiGI	ACCGGT	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	1356
AspA2I	CCTAGG	1 cut(s)	1613
AspLEI	GCGC	3 cut(s)	274, 308, 385
AspS9I	GGNCC	6 cut(s)	19, 189, 458, 459, 778, 1785
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	2 cut(s)	216, 668
AvaII	GGWCC	1 cut(s)	19
AvrII	CCTAGG	1 cut(s)	1613
AxyI	CCTNAGG	1 cut(s)	1370
BaeGI	GKGCMC	2 cut(s)	462, 541
BaeI	ACNNNNGTAYC	2 cut(s)	1239, 1272
BalI	TGGCCA	2 cut(s)	1170, 1195
BanII	GRGCYC	2 cut(s)	150, 462
BauI	CACGAG	1 cut(s)	933
Bbv12I	GWGCWC	2 cut(s)	150, 541
BbvCI	CCTCAGC	2 cut(s)	360, 1746
BbvI	GCAGC	8 cut(s)	173, 205, 457, 488, 605, 756, 784, 1431
BccI	CCATC	4 cut(s)	340, 427, 1066, 1644
BciT130I	CCWGG	6 cut(s)	85, 187, 241, 953, 1259, 1577
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	235, 1224, 1589
BfaI	CTAG	7 cut(s)	440, 527, 579, 863, 1614, 1692, 1821
BfmI	CTRYAG	1 cut(s)	159
BfuAI	ACCTGC	2 cut(s)	30, 1444
BglII	AGATCT	1 cut(s)	1561
BlnI	CCTAGG	1 cut(s)	1613
Bme1390I	CCNGG	7 cut(s)	85, 130, 187, 241, 953, 1259, 1577
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	6 cut(s)	19, 189, 458, 459, 778, 1785
BmiI	GGNNCC	4 cut(s)	66, 268, 460, 1787
BmrFI	CCNGG	7 cut(s)	85, 130, 187, 241, 953, 1259, 1577
BmsI	GCATC	4 cut(s)	316, 559, 613, 1300
BpmI	CTGGAG	2 cut(s)	1584, 1608
Bpu10I	CCTNAGC	2 cut(s)	360, 1746
BpuEI	CTTGAG	2 cut(s)	794, 1475
BpuMI	CCSGG	1 cut(s)	130
Bsa29I	ATCGAT	1 cut(s)	431
BsaHI	GRCGYC	2 cut(s)	90, 183
BsaI	GGTCTC	1 cut(s)	235
BsaJI	CCNNGG	6 cut(s)	83, 84, 186, 369, 1116, 1613
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	6 cut(s)	98, 128, 196, 226, 711, 741
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 240, 1695
Bse118I	RCCGGY	2 cut(s)	100, 226
Bse1I	ACTGG	5 cut(s)	945, 1171, 1278, 1507, 1601
Bse21I	CCTNAGG	1 cut(s)	1370
Bse3DI	GCAATG	2 cut(s)	638, 902
BseBI	CCWGG	6 cut(s)	85, 187, 241, 953, 1259, 1577
BseCI	ATCGAT	1 cut(s)	431
BseDI	CCNNGG	6 cut(s)	83, 84, 186, 369, 1116, 1613
BseGI	GGATG	5 cut(s)	45, 331, 757, 970, 1267
BseLI	CCNNNNNNNGG	3 cut(s)	28, 240, 1695
BseMI	GCAATG	2 cut(s)	638, 902
BseMII	CTCAG	3 cut(s)	26, 351, 1760
BseNI	ACTGG	5 cut(s)	945, 1171, 1278, 1507, 1601
BseRI	GAGGAG	7 cut(s)	29, 122, 184, 189, 198, 201, 1734
BseSI	GKGCMC	2 cut(s)	462, 541
BseXI	GCAGC	8 cut(s)	173, 205, 457, 488, 605, 756, 784, 1431
BseYI	CCCAGC	1 cut(s)	971
BsgI	GTGCAG	1 cut(s)	464
Bsh1236I	CGCG	2 cut(s)	272, 308
BshFI	GGCC	7 cut(s)	191, 460, 780, 1170, 1195, 1488, 1786
BshTI	ACCGGT	1 cut(s)	226
BshVI	ATCGAT	1 cut(s)	431
BsiHKAI	GWGCWC	2 cut(s)	150, 541
BsiSI	CCGG	5 cut(s)	62, 101, 130, 215, 227
BslFI	GGGAC	3 cut(s)	101, 1034, 1132
BslI	CCNNNNNNNGG	3 cut(s)	28, 240, 1695
BsmAI	GTCTC	3 cut(s)	235, 1224, 1589
BsmFI	GGGAC	3 cut(s)	101, 1034, 1132
BsmI	GAATGC	2 cut(s)	180, 375
BsnI	GGCC	7 cut(s)	191, 460, 780, 1170, 1195, 1488, 1786
Bso31I	GGTCTC	1 cut(s)	235
Bsp120I	GGGCCC	1 cut(s)	458
Bsp1286I	GDGCHC	3 cut(s)	150, 462, 541
Bsp143I	GATC	8 cut(s)	7, 418, 967, 1318, 1408, 1465, 1528, 1561
BspANI	GGCC	7 cut(s)	191, 460, 780, 1170, 1195, 1488, 1786
BspCNI	CTCAG	3 cut(s)	27, 352, 1759
BspDI	ATCGAT	1 cut(s)	431
BspFNI	CGCG	2 cut(s)	272, 308
BspLI	GGNNCC	4 cut(s)	66, 268, 460, 1787
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	2 cut(s)	30, 1444
BspPI	GGATC	4 cut(s)	15, 413, 962, 1473
BspTNI	GGTCTC	1 cut(s)	235
BsrDI	GCAATG	2 cut(s)	638, 902
BsrFI	RCCGGY	2 cut(s)	100, 226
BsrI	ACTGG	5 cut(s)	945, 1171, 1278, 1507, 1601
BssAI	RCCGGY	2 cut(s)	100, 226
BssECI	CCNNGG	6 cut(s)	83, 84, 186, 369, 1116, 1613
BssMI	GATC	8 cut(s)	7, 418, 967, 1318, 1408, 1465, 1528, 1561
BssNI	GRCGYC	2 cut(s)	90, 183
BssSI	CACGAG	1 cut(s)	933
BssT1I	CCWWGG	2 cut(s)	369, 1613
Bst2BI	CACGAG	1 cut(s)	933
Bst2UI	CCWGG	6 cut(s)	85, 187, 241, 953, 1259, 1577
Bst4CI	ACNGT	3 cut(s)	1117, 1140, 1231
BstACI	GRCGYC	2 cut(s)	90, 183
BstAPI	GCANNNNNTGC	1 cut(s)	814
BstC8I	GCNNGC	6 cut(s)	102, 1005, 1040, 1044, 1752, 1784
BstDEI	CTNAG	7 cut(s)	35, 360, 644, 818, 1370, 1731, 1746
BstDSI	CCRYGG	1 cut(s)	1116
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	5 cut(s)	45, 331, 757, 970, 1267
BstFNI	CGCG	2 cut(s)	272, 308
BstHHI	GCGC	3 cut(s)	274, 308, 385
BstKTI	GATC	8 cut(s)	10, 421, 970, 1321, 1411, 1468, 1531, 1564
BstMAI	GTCTC	3 cut(s)	235, 1224, 1589
BstMBI	GATC	8 cut(s)	7, 418, 967, 1318, 1408, 1465, 1528, 1561
BstNI	CCWGG	6 cut(s)	85, 187, 241, 953, 1259, 1577
BstNSI	RCATGY	3 cut(s)	550, 1007, 1754
BstSCI	CCNGG	7 cut(s)	83, 128, 185, 239, 951, 1257, 1575
BstSFI	CTRYAG	1 cut(s)	159
BstSLI	GKGCMC	2 cut(s)	462, 541
BstUI	CGCG	2 cut(s)	272, 308
BstV1I	GCAGC	8 cut(s)	173, 205, 457, 488, 605, 756, 784, 1431
BstX2I	RGATCY	2 cut(s)	1465, 1561
BstXI	CCANNNNNNTGG	2 cut(s)	1117, 1544
BstYI	RGATCY	2 cut(s)	1465, 1561
Bsu15I	ATCGAT	1 cut(s)	431
Bsu36I	CCTNAGG	1 cut(s)	1370
BsuRI	GGCC	7 cut(s)	191, 460, 780, 1170, 1195, 1488, 1786
BsuTUI	ATCGAT	1 cut(s)	431
BtgI	CCRYGG	1 cut(s)	1116
BtsCI	GGATG	5 cut(s)	45, 331, 757, 970, 1267
BtsI	GCAGTG	4 cut(s)	392, 876, 987, 1689
BtsIMutI	CAGTG	7 cut(s)	32, 392, 876, 987, 1136, 1608, 1689
BveI	ACCTGC	2 cut(s)	30, 1444
Cac8I	GCNNGC	6 cut(s)	102, 1005, 1040, 1044, 1752, 1784
CaiI	CAGNNNCTG	1 cut(s)	800
CfoI	GCGC	3 cut(s)	274, 308, 385
Cfr10I	RCCGGY	2 cut(s)	100, 226
Cfr13I	GGNCC	6 cut(s)	19, 189, 458, 459, 778, 1785
ClaI	ATCGAT	1 cut(s)	431
CseI	GACGC	3 cut(s)	98, 191, 847
CspAI	ACCGGT	1 cut(s)	226
CviAII	CATG	7 cut(s)	151, 449, 547, 672, 1004, 1480, 1751
DdeI	CTNAG	7 cut(s)	35, 360, 644, 818, 1370, 1731, 1746
DpnI	GATC	8 cut(s)	9, 420, 969, 1320, 1410, 1467, 1530, 1563
DpnII	GATC	8 cut(s)	7, 418, 967, 1318, 1408, 1465, 1528, 1561
DraI	TTTAAA	1 cut(s)	1098
EaeI	YGGCCR	2 cut(s)	1168, 1193
EciI	GGCGGA	3 cut(s)	20, 119, 338
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	2 cut(s)	369, 1613
Eco147I	AGGCCT	1 cut(s)	1488
Eco24I	GRGCYC	2 cut(s)	150, 462
Eco31I	GGTCTC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	3 cut(s)	122, 639, 1680
Eco81I	CCTNAGG	1 cut(s)	1370
EcoICRI	GAGCTC	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoO109I	RGGNCCY	3 cut(s)	19, 459, 778
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	6 cut(s)	83, 185, 239, 951, 1257, 1575
EcoT14I	CCWWGG	2 cut(s)	369, 1613
EcoT22I	ATGCAT	1 cut(s)	552
EcoT38I	GRGCYC	2 cut(s)	150, 462
ErhI	CCWWGG	2 cut(s)	369, 1613
FaeI	CATG	7 cut(s)	154, 452, 550, 675, 1007, 1483, 1754
FalI	AAGNNNNNCTT	2 cut(s)	1508, 1540
FaqI	GGGAC	3 cut(s)	101, 1034, 1132
FatI	CATG	7 cut(s)	150, 448, 546, 671, 1003, 1479, 1750
FauI	CCCGC	2 cut(s)	244, 1031
FokI	GGATG	5 cut(s)	52, 338, 764, 977, 1274
FriOI	GRGCYC	2 cut(s)	150, 462
FspBI	CTAG	7 cut(s)	440, 527, 579, 863, 1614, 1692, 1821
FspI	TGCGCA	1 cut(s)	384
GlaI	GCGC	3 cut(s)	273, 307, 384
GsaI	CCCAGC	1 cut(s)	975
GsuI	CTGGAG	2 cut(s)	1584, 1608
HaeIII	GGCC	7 cut(s)	191, 460, 780, 1170, 1195, 1488, 1786
HapII	CCGG	5 cut(s)	62, 101, 130, 215, 227
HgaI	GACGC	3 cut(s)	98, 191, 847
HhaI	GCGC	3 cut(s)	274, 308, 385
Hin1I	GRCGYC	2 cut(s)	90, 183
Hin1II	CATG	7 cut(s)	154, 452, 550, 675, 1007, 1483, 1754
Hin6I	GCGC	3 cut(s)	272, 306, 383
HinP1I	GCGC	3 cut(s)	272, 306, 383
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HindIII	AAGCTT	1 cut(s)	1302
HpaI	GTTAAC	1 cut(s)	826
HpaII	CCGG	5 cut(s)	62, 101, 130, 215, 227
HphI	GGTGA	2 cut(s)	216, 668
Hpy166II	GTNNAC	4 cut(s)	539, 826, 1024, 1765
Hpy188I	TCNGA	8 cut(s)	118, 619, 887, 1299, 1323, 1561, 1566, 1832
Hpy188III	TCNNGA	9 cut(s)	11, 124, 422, 933, 1110, 1244, 1469, 1587, 1658
Hpy8I	GTNNAC	4 cut(s)	539, 826, 1024, 1765
Hpy99I	CGWCG	4 cut(s)	118, 185, 841, 1067
HpyAV	CCTTC	8 cut(s)	283, 446, 734, 1271, 1275, 1346, 1396, 1513
HpyCH4III	ACNGT	3 cut(s)	1117, 1140, 1231
HpyCH4IV	ACGT	1 cut(s)	726
HpyF3I	CTNAG	7 cut(s)	35, 360, 644, 818, 1370, 1731, 1746
HpySE526I	ACGT	1 cut(s)	726
Hsp92I	GRCGYC	2 cut(s)	90, 183
Hsp92II	CATG	7 cut(s)	154, 452, 550, 675, 1007, 1483, 1754
HspAI	GCGC	3 cut(s)	272, 306, 383
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
KspAI	GTTAAC	1 cut(s)	826
Kzo9I	GATC	8 cut(s)	7, 418, 967, 1318, 1408, 1465, 1528, 1561
LmnI	GCTCC	4 cut(s)	64, 202, 997, 1246
Lsp1109I	GCAGC	8 cut(s)	173, 205, 457, 488, 605, 756, 784, 1431
LweI	GCATC	4 cut(s)	316, 559, 613, 1300
MaeI	CTAG	7 cut(s)	440, 527, 579, 863, 1614, 1692, 1821
MaeII	ACGT	1 cut(s)	726
MaeIII	GTNAC	2 cut(s)	985, 1717
MalI	GATC	8 cut(s)	9, 420, 969, 1320, 1410, 1467, 1530, 1563
MboI	GATC	8 cut(s)	7, 418, 967, 1318, 1408, 1465, 1528, 1561
MboII	GAAGA	3 cut(s)	632, 1403, 1673
MfeI	CAATTG	1 cut(s)	1801
MflI	RGATCY	2 cut(s)	1465, 1561
MhlI	GDGCHC	3 cut(s)	150, 462, 541
MlsI	TGGCCA	2 cut(s)	1170, 1195
MluCI	AATT	9 cut(s)	52, 299, 556, 1017, 1153, 1197, 1548, 1625, 1801
MluNI	TGGCCA	2 cut(s)	1170, 1195
MlyI	GAGTC	5 cut(s)	119, 1154, 1226, 1591, 1648
MmeI	TCCRAC	4 cut(s)	96, 1105, 1122, 1189
Mox20I	TGGCCA	2 cut(s)	1170, 1195
Mph1103I	ATGCAT	1 cut(s)	552
MreI	CGCCGGCG	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	1356
MscI	TGGCCA	2 cut(s)	1170, 1195
MseI	TTAA	6 cut(s)	825, 947, 1097, 1152, 1508, 1542
MslI	CAYNNNNRTG	2 cut(s)	453, 1542
Msp20I	TGGCCA	2 cut(s)	1170, 1195
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	5 cut(s)	62, 101, 130, 215, 227
MspR9I	CCNGG	7 cut(s)	85, 130, 187, 241, 953, 1259, 1577
MunI	CAATTG	1 cut(s)	1801
Mva1269I	GAATGC	2 cut(s)	180, 375
MvaI	CCWGG	6 cut(s)	85, 187, 241, 953, 1259, 1577
MvnI	CGCG	2 cut(s)	272, 308
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	8 cut(s)	7, 418, 967, 1318, 1408, 1465, 1528, 1561
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	7 cut(s)	154, 452, 550, 675, 1007, 1483, 1754
NlaIV	GGNNCC	4 cut(s)	66, 268, 460, 1787
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	2 cut(s)	985, 1717
NsbI	TGCGCA	1 cut(s)	384
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	3 cut(s)	550, 1007, 1754
PaeI	GCATGC	2 cut(s)	1007, 1754
PasI	CCCWGGG	1 cut(s)	84
PceI	AGGCCT	1 cut(s)	1488
PcsI	WCGNNNNNNNCGW	1 cut(s)	1786
PctI	GAATGC	2 cut(s)	180, 375
PdiI	GCCGGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	1356
PfeI	GAWTC	9 cut(s)	95, 791, 874, 1128, 1286, 1294, 1496, 1703, 1814
PfoI	TCCNGGA	1 cut(s)	1257
PinAI	ACCGGT	1 cut(s)	226
PleI	GAGTC	5 cut(s)	118, 1153, 1225, 1591, 1648
PpsI	GAGTC	5 cut(s)	118, 1153, 1225, 1591, 1648
PpuMI	RGGWCCY	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	1508
Psp124BI	GAGCTC	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	19
Psp6I	CCWGG	6 cut(s)	83, 185, 239, 951, 1257, 1575
PspFI	CCCAGC	1 cut(s)	971
PspGI	CCWGG	6 cut(s)	83, 185, 239, 951, 1257, 1575
PspN4I	GGNNCC	4 cut(s)	66, 268, 460, 1787
PspOMI	GGGCCC	1 cut(s)	458
PspPI	GGNCC	6 cut(s)	19, 189, 458, 459, 778, 1785
PspPPI	RGGWCCY	1 cut(s)	19
PstI	CTGCAG	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	800
PsuI	RGATCY	2 cut(s)	1465, 1561
PvuII	CAGCTG	1 cut(s)	797
RseI	CAYNNNNRTG	2 cut(s)	453, 1542
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	6 cut(s)	825, 947, 1097, 1152, 1508, 1542
Sau3AI	GATC	8 cut(s)	7, 418, 967, 1318, 1408, 1465, 1528, 1561
Sau96I	GGNCC	6 cut(s)	19, 189, 458, 459, 778, 1785
SchI	GAGTC	5 cut(s)	119, 1154, 1226, 1591, 1648
ScrFI	CCNGG	7 cut(s)	85, 130, 187, 241, 953, 1259, 1577
SduI	GDGCHC	3 cut(s)	150, 462, 541
SfaNI	GCATC	4 cut(s)	316, 559, 613, 1300
SfcI	CTRYAG	1 cut(s)	159
SgrAI	CRCCGGYG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	19
SmiMI	CAYNNNNRTG	2 cut(s)	453, 1542
SmlI	CTYRAG	2 cut(s)	773, 1490
SmoI	CTYRAG	2 cut(s)	773, 1490
SphI	GCATGC	2 cut(s)	1007, 1754
Sse9I	AATT	9 cut(s)	52, 299, 556, 1017, 1153, 1197, 1548, 1625, 1801
SseBI	AGGCCT	1 cut(s)	1488
SspMI	CTAG	7 cut(s)	440, 527, 579, 863, 1614, 1692, 1821
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	1488
StyD4I	CCNGG	7 cut(s)	83, 128, 185, 239, 951, 1257, 1575
StyI	CCWWGG	2 cut(s)	369, 1613
TaaI	ACNGT	3 cut(s)	1117, 1140, 1231
TaiI	ACGT	1 cut(s)	729
TaqI	TCGA	4 cut(s)	180, 344, 431, 1062
TasI	AATT	9 cut(s)	52, 299, 556, 1017, 1153, 1197, 1548, 1625, 1801
TauI	GCSGC	2 cut(s)	61, 251
TfiI	GAWTC	9 cut(s)	95, 791, 874, 1128, 1286, 1294, 1496, 1703, 1814
Tru1I	TTAA	6 cut(s)	825, 947, 1097, 1152, 1508, 1542
Tru9I	TTAA	6 cut(s)	825, 947, 1097, 1152, 1508, 1542
TscAI	CASTG	7 cut(s)	39, 392, 876, 994, 1143, 1608, 1689
TseFI	GTSAC	2 cut(s)	985, 1717
TseI	GCWGC	8 cut(s)	161, 218, 445, 476, 593, 744, 797, 1419
Tsp45I	GTSAC	2 cut(s)	985, 1717
TspDTI	ATGAA	7 cut(s)	302, 465, 768, 1284, 1330, 1349, 1716
TspGWI	ACGGA	2 cut(s)	537, 1080
TspRI	CASTG	7 cut(s)	39, 392, 876, 994, 1143, 1608, 1689
VneI	GTGCAC	1 cut(s)	537
VpaK11BI	GGWCC	1 cut(s)	19
VspI	ATTAAT	1 cut(s)	1508
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	1 cut(s)	52
XceI	RCATGY	3 cut(s)	550, 1007, 1754
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1583
XmaJI	CCTAGG	1 cut(s)	1613
XmnI	GAANNNNTTC	1 cut(s)	1356
XspI	CTAG	7 cut(s)	440, 527, 579, 863, 1614, 1692, 1821
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.