RchiOBHm_Chr3g0479641

Serine/threonine phosphatases, family 2C, catalytic domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
25436881 .. 25439517
2637 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44472

Sequence Viewer

Length: 1443 bp
ATGGAAGAAGACAGCTCCTCCGGAGTTCGCCTAATCTGTTTTTCCTTAATACTAGCCCTAATTACGACGACGTCGGCAGCCTCTTACGACGAGTCGTCGTCGACGTGTTTGACGCTTTACGAACAAGGCGGTGCTCCCGCGGTTTTCCAATCCCCAAAATGCCCTCGCTGGAAGCGCGCCGATTCCCTCCAGCGTTGCCAGACCGCCGTGCGTCGAGGTCGGAGAAACCGCCTCGAGGATCGTGCTCTTTGCGCTCTCGACCTTCGTATTCCATTTCCTGGTGAATTAGGGATTAAGGAGGTTAAAGTTGGGATTGTGGCTGTTTTTGATGGGCATAATGGTGCTGAAGCCAGTGATATGGCCTCAAAGCTTTTATTGGAGTATTTCGTTTTGCATACCTATTTTCTTCTTGATTCACCTTATTATTCTGATGCATCGAATAAATATTCAAGAACAGAAATATTGCAAACTGGTGGAGAACTTTATACTTCAAATGGTGTATTCCGATCGTATCAATTGGATGTTGCAAGGTTTAATCCTTCTTTGAAAGCAAAGTTTGATGATTCGCGTCATTTTGATATTTTGAAAGAAGCATTGTTGAGAGCAGTTCATGATATTGATGCAAAATTTTCTATGGAAGCATCTTGGAAAAATCTTGTATCTGGTACTACAGCCTCGATTATATTACTTGCTGATGGCCATATTTTAGTTGCCAATATTGGAGACTCAAAGGCTTTTCTGTGCTCAGAAAAATTTCAATCTCCTGCAGAGGCTAAAGCCGCTTATTTGAGATACAGGCGGGAAAGGCGTAATGGTGCCATATCATCTCCCTTAGGAAACTATAAGAAAAACTTTGAATTGGCTTCCTCCTCCTCTGGGTTGGTGCAGCTTTCTGTTAAGGAATTGACGAGAGATCATCATCCAGACAGAGATGATGAAAAATTCCGCGTGGAAACTGCTGGTGGCTATGTGGAATTGGGTGGTGTGCCTCGAGTAAATGGTCAGCTGGCTATTTCCAGATCTATTGGCGATATTTCCTTCAAAAGTTTCGGCGTTATATCTACACCAGAGTTGACCGACTGGCAACCCCTGACTGTAAACGATACCTATCTCGTTGCTGCATCTGATGGAGTTTTTGAGAAGCAGAGTCTGCAGGATGTTTGTGATTTATTGTGGGAAGCTCGGAGTTATGATTCTAGGAGATCGGAGTTCTCTTCCTCGCCTTGTTCATACTCATTAGCCAACTGCATCGTGAATGCTGCACTCGACAAGGGCAGCATGGATAATGTGGCAGCTGTTGTCGTTCCAATGATATCTACTTGGTTTTTTGAAAGTTTTTTCATGGAAGGATCAGTTTCAGAGAGGGACAGAAACTGTGAAGCATTAGGACTACAAAGTTCCACTGATGAGTGCACAGCTAATGACTTCAATTATGAGTTATGA

Protein Analysis

480

Amino Acids

53.16

Weight (kDa)

5.26

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 187 - 250 2.9e-06 Protein phosphatase 2C
PP2C PF00481 300 - 430 1.2e-23 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 74
AbsI CCTCGAGG 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 815
AccB7I CCANNNNNTGG 1 cut(s) 278
AccI GTMKAC 1 cut(s) 101
AccII CGCG 4 cut(s) 140, 177, 568, 948
AccIII TCCGGA 1 cut(s) 20
AciI CCGC 8 cut(s) 129, 138, 140, 204, 229, 780, 799, 946
AclWI GGATC 2 cut(s) 246, 1357
AcoI YGGCCR 1 cut(s) 697
AcsI RAATTY 3 cut(s) 626, 752, 941
AcuI CTGAAG 1 cut(s) 366
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 667
AfiI CCNNNNNNNGG 3 cut(s) 235, 278, 876
AflIII ACRYGT 1 cut(s) 104
AgsI TTSAA 9 cut(s) 450, 492, 547, 586, 758, 857, 1042, 1331, 1429
AhdI GACNNNNNGTC 1 cut(s) 94
AjiI CACGTC 1 cut(s) 105
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 7 cut(s) 15, 370, 889, 1006, 1181, 1295, 1418
AluI AGCT 7 cut(s) 15, 370, 889, 1006, 1181, 1295, 1418
Alw21I GWGCWC 4 cut(s) 136, 247, 746, 1415
Alw26I GTCTC 1 cut(s) 717
Alw44I GTGCAC 1 cut(s) 1411
AlwI GGATC 2 cut(s) 246, 1357
AlwNI CAGNNNCTG 2 cut(s) 1150, 1374
Ama87I CYCGRG 2 cut(s) 233, 990
Aor13HI TCCGGA 1 cut(s) 20
AoxI GGCC 2 cut(s) 360, 697
ApaLI GTGCAC 1 cut(s) 1411
ApeKI GCWGC 6 cut(s) 77, 886, 1118, 1259, 1275, 1292
ApoI RAATTY 3 cut(s) 626, 752, 941
Asp700I GAANNNNTTC 1 cut(s) 753
AspLEI GCGC 3 cut(s) 177, 179, 254
AsuHPI GGTGA 2 cut(s) 293, 408
AvaI CYCGRG 2 cut(s) 233, 990
AxyI CCTNAGG 1 cut(s) 832
BaeGI GKGCMC 1 cut(s) 1415
BalI TGGCCA 1 cut(s) 699
BanI GGYRCC 1 cut(s) 815
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 4 cut(s) 136, 247, 746, 1415
BbvI GCAGC 6 cut(s) 89, 898, 1105, 1246, 1287, 1304
BccI CCATC 3 cut(s) 323, 689, 1121
BceAI ACGGC 1 cut(s) 191
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 717
BfaI CTAG 2 cut(s) 53, 1197
BfmI CTRYAG 3 cut(s) 669, 765, 1151
BglII AGATCT 1 cut(s) 1019
BisI GCNGC 7 cut(s) 78, 780, 887, 1119, 1260, 1276, 1293
BlsI GCNGC 7 cut(s) 79, 781, 888, 1120, 1261, 1277, 1294
Bme1390I CCNGG 1 cut(s) 279
BmeRI GACNNNNNGTC 1 cut(s) 94
BmeT110I CYCGRG 2 cut(s) 233, 990
BmgBI CACGTC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 817
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 6 cut(s) 421, 443, 610, 650, 1130, 1257
BpiI GAAGAC 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 173
BsaBI GATNNNNATC 2 cut(s) 918, 1107
BsaHI GRCGYC 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 138
BsaWI WCCGGW 1 cut(s) 20
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 278, 876
Bse1I ACTGG 3 cut(s) 351, 475, 1085
Bse21I CCTNAGG 1 cut(s) 832
Bse8I GATNNNNATC 2 cut(s) 918, 1107
BseAI TCCGGA 1 cut(s) 20
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 3 cut(s) 526, 919, 1162
BseJI GATNNNNATC 2 cut(s) 918, 1107
BseLI CCNNNNNNNGG 3 cut(s) 235, 278, 876
BseMII CTCAG 1 cut(s) 759
BseNI ACTGG 3 cut(s) 351, 475, 1085
BsePI GCGCGC 1 cut(s) 175
BseRI GAGGAG 3 cut(s) 7, 859, 862
BseSI GKGCMC 1 cut(s) 1415
BseXI GCAGC 6 cut(s) 89, 898, 1105, 1246, 1287, 1304
BsgI GTGCAG 2 cut(s) 905, 1245
Bsh1236I CGCG 4 cut(s) 140, 177, 568, 948
Bsh1285I CGRYCG 1 cut(s) 509
BshFI GGCC 2 cut(s) 362, 699
BshNI GGYRCC 1 cut(s) 815
BsiEI CGRYCG 1 cut(s) 509
BsiHKAI GWGCWC 4 cut(s) 136, 247, 746, 1415
BsiHKCI CYCGRG 2 cut(s) 233, 990
BsiSI CCGG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 1379
BslI CCNNNNNNNGG 3 cut(s) 235, 278, 876
BsmAI GTCTC 1 cut(s) 717
BsmFI GGGAC 1 cut(s) 1379
BsmI GAATGC 1 cut(s) 1261
BsnI GGCC 2 cut(s) 362, 699
BsoBI CYCGRG 2 cut(s) 233, 990
Bsp1286I GDGCHC 4 cut(s) 136, 247, 746, 1415
Bsp13I TCCGGA 1 cut(s) 20
Bsp143I GATC 6 cut(s) 238, 506, 913, 1019, 1202, 1349
BspACI CCGC 8 cut(s) 129, 138, 140, 204, 229, 780, 799, 946
BspANI GGCC 2 cut(s) 362, 699
BspCNI CTCAG 1 cut(s) 758
BspEI TCCGGA 1 cut(s) 20
BspFNI CGCG 4 cut(s) 140, 177, 568, 948
BspHI TCATGA 1 cut(s) 610
BspLI GGNNCC 1 cut(s) 817
BspMAI CTGCAG 2 cut(s) 769, 1155
BspPI GGATC 2 cut(s) 246, 1357
BspT107I GGYRCC 1 cut(s) 815
BsrI ACTGG 3 cut(s) 351, 475, 1085
BssECI CCNNGG 1 cut(s) 138
BssHII GCGCGC 1 cut(s) 175
BssMI GATC 6 cut(s) 238, 506, 913, 1019, 1202, 1349
BssNI GRCGYC 1 cut(s) 71
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 1096, 1376
Bst6I CTCTTC 1 cut(s) 1219
BstACI GRCGYC 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 1150
BstC8I GCNNGC 2 cut(s) 177, 1008
BstDEI CTNAG 2 cut(s) 745, 832
BstDSI CCRYGG 1 cut(s) 138
BstF5I GGATG 3 cut(s) 526, 919, 1162
BstFNI CGCG 4 cut(s) 140, 177, 568, 948
BstHHI GCGC 3 cut(s) 177, 179, 254
BstKTI GATC 6 cut(s) 241, 509, 916, 1022, 1205, 1352
BstMAI GTCTC 1 cut(s) 717
BstMBI GATC 6 cut(s) 238, 506, 913, 1019, 1202, 1349
BstMCI CGRYCG 1 cut(s) 509
BstMWI GCNNNNNNNGC 5 cut(s) 174, 251, 779, 805, 1150
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstSFI CTRYAG 3 cut(s) 669, 765, 1151
BstSLI GKGCMC 1 cut(s) 1415
BstUI CGCG 4 cut(s) 140, 177, 568, 948
BstV1I GCAGC 6 cut(s) 89, 898, 1105, 1246, 1287, 1304
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 1 cut(s) 1019
BstXI CCANNNNNNTGG 1 cut(s) 358
BstYI RGATCY 1 cut(s) 1019
Bsu36I CCTNAGG 1 cut(s) 832
BsuRI GGCC 2 cut(s) 362, 699
BtgI CCRYGG 1 cut(s) 138
BtrI CACGTC 1 cut(s) 105
BtsCI GGATG 3 cut(s) 526, 919, 1162
BtsIMutI CAGTG 2 cut(s) 358, 1401
Cac8I GCNNGC 2 cut(s) 177, 1008
CaiI CAGNNNCTG 2 cut(s) 1150, 1374
CciI TCATGA 1 cut(s) 610
CfoI GCGC 3 cut(s) 177, 179, 254
Cfr42I CCGCGG 1 cut(s) 141
CseI GACGC 3 cut(s) 121, 200, 557
Csp6I GTAC 1 cut(s) 666
CviAII CATG 3 cut(s) 611, 1279, 1342
CviQI GTAC 1 cut(s) 666
DdeI CTNAG 2 cut(s) 745, 832
DpnI GATC 6 cut(s) 240, 508, 915, 1021, 1204, 1351
DpnII GATC 6 cut(s) 238, 506, 913, 1019, 1202, 1349
DriI GACNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 697
Eam1104I CTCTTC 1 cut(s) 1219
Eam1105I GACNNNNNGTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 1219
Eco32I GATATC 1 cut(s) 1314
Eco57I CTGAAG 1 cut(s) 366
Eco81I CCTNAGG 1 cut(s) 832
Eco88I CYCGRG 2 cut(s) 233, 990
EcoRII CCWGG 1 cut(s) 277
EcoRV GATATC 1 cut(s) 1314
EcoT22I ATGCAT 1 cut(s) 436
FaeI CATG 3 cut(s) 614, 1282, 1345
FalI AAGNNNNNCTT 2 cut(s) 836, 868
FaqI GGGAC 1 cut(s) 1379
FatI CATG 3 cut(s) 610, 1278, 1341
FauI CCCGC 2 cut(s) 145, 792
FblI GTMKAC 1 cut(s) 101
Fnu4HI GCNGC 7 cut(s) 78, 780, 887, 1119, 1260, 1276, 1293
FokI GGATG 3 cut(s) 533, 906, 1169
Fsp4HI GCNGC 7 cut(s) 78, 780, 887, 1119, 1260, 1276, 1293
FspBI CTAG 2 cut(s) 53, 1197
GlaI GCGC 3 cut(s) 176, 178, 253
GluI GCNGC 7 cut(s) 78, 780, 887, 1119, 1260, 1276, 1293
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 2 cut(s) 362, 699
HapII CCGG 1 cut(s) 21
HgaI GACGC 3 cut(s) 121, 200, 557
HhaI GCGC 3 cut(s) 177, 179, 254
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 3 cut(s) 614, 1282, 1345
Hin6I GCGC 3 cut(s) 175, 177, 252
HinP1I GCGC 3 cut(s) 175, 177, 252
HincII GTYRAC 2 cut(s) 102, 1074
HindII GTYRAC 2 cut(s) 102, 1074
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 7 cut(s) 92, 182, 413, 563, 725, 1147, 1193
HpaII CCGG 1 cut(s) 21
HphI GGTGA 2 cut(s) 293, 408
Hpy166II GTNNAC 4 cut(s) 102, 1074, 1099, 1413
Hpy188I TCNGA 8 cut(s) 222, 430, 506, 748, 1126, 1185, 1207, 1360
Hpy188III TCNNGA 8 cut(s) 21, 257, 410, 450, 611, 923, 1017, 1252
Hpy8I GTNNAC 4 cut(s) 102, 1074, 1099, 1413
Hpy99I CGWCG 8 cut(s) 70, 73, 76, 92, 100, 103, 106, 216
HpyAV CCTTC 4 cut(s) 272, 549, 1048, 1340
HpyCH4III ACNGT 2 cut(s) 1096, 1376
HpyCH4IV ACGT 2 cut(s) 71, 104
HpyF10VI GCNNNNNNNGC 5 cut(s) 174, 251, 779, 805, 1150
HpyF3I CTNAG 2 cut(s) 745, 832
HpySE526I ACGT 2 cut(s) 71, 104
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 3 cut(s) 614, 1282, 1345
HspAI GCGC 3 cut(s) 175, 177, 252
Kpn2I TCCGGA 1 cut(s) 20
KspI CCGCGG 1 cut(s) 141
Kzo9I GATC 6 cut(s) 238, 506, 913, 1019, 1202, 1349
LmnI GCTCC 2 cut(s) 20, 139
Lsp1109I GCAGC 6 cut(s) 89, 898, 1105, 1246, 1287, 1304
LweI GCATC 6 cut(s) 421, 443, 610, 650, 1130, 1257
MaeI CTAG 2 cut(s) 53, 1197
MaeII ACGT 2 cut(s) 71, 104
MalI GATC 6 cut(s) 240, 508, 915, 1021, 1204, 1351
MboI GATC 6 cut(s) 238, 506, 913, 1019, 1202, 1349
MboII GAAGA 4 cut(s) 17, 20, 398, 1206
MfeI CAATTG 1 cut(s) 515
MflI RGATCY 1 cut(s) 1019
MhlI GDGCHC 4 cut(s) 136, 247, 746, 1415
MlsI TGGCCA 1 cut(s) 699
MluNI TGGCCA 1 cut(s) 699
MlyI GAGTC 3 cut(s) 101, 719, 1156
MmeI TCCRAC 1 cut(s) 200
Mox20I TGGCCA 1 cut(s) 699
Mph1103I ATGCAT 1 cut(s) 436
MroI TCCGGA 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 753
MscI TGGCCA 1 cut(s) 699
MseI TTAA 5 cut(s) 47, 294, 303, 534, 897
MslI CAYNNNNRTG 1 cut(s) 339
Msp20I TGGCCA 1 cut(s) 699
MspA1I CMGCKG 3 cut(s) 140, 1006, 1295
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 279
MunI CAATTG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 1261
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 4 cut(s) 140, 177, 568, 948
MwoI GCNNNNNNNGC 5 cut(s) 174, 251, 779, 805, 1150
NdeII GATC 6 cut(s) 238, 506, 913, 1019, 1202, 1349
NlaIII CATG 3 cut(s) 614, 1282, 1345
NlaIV GGNNCC 1 cut(s) 817
NsiI ATGCAT 1 cut(s) 436
PaeR7I CTCGAG 2 cut(s) 233, 990
PagI TCATGA 1 cut(s) 610
PauI GCGCGC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PctI GAATGC 1 cut(s) 1261
PdmI GAANNNNTTC 1 cut(s) 753
PfeI GAWTC 4 cut(s) 182, 413, 563, 1193
PflFI GACNNNGTC 1 cut(s) 70
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 7 cut(s) 79, 781, 888, 1120, 1261, 1277, 1294
Ple19I CGATCG 1 cut(s) 509
PleI GAGTC 3 cut(s) 100, 719, 1155
PpsI GAGTC 3 cut(s) 100, 719, 1155
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 817
PspXI VCTCGAGB 2 cut(s) 233, 990
PstI CTGCAG 2 cut(s) 769, 1155
PstNI CAGNNNCTG 2 cut(s) 1150, 1374
PsuI RGATCY 1 cut(s) 1019
PsyI GACNNNGTC 1 cut(s) 70
PteI GCGCGC 1 cut(s) 175
PvuI CGATCG 1 cut(s) 509
PvuII CAGCTG 2 cut(s) 1006, 1295
RsaI GTAC 1 cut(s) 667
RsaNI GTAC 1 cut(s) 666
RseI CAYNNNNRTG 1 cut(s) 339
SacII CCGCGG 1 cut(s) 141
SalI GTCGAC 1 cut(s) 100
SaqAI TTAA 5 cut(s) 47, 294, 303, 534, 897
SatI GCNGC 7 cut(s) 78, 780, 887, 1119, 1260, 1276, 1293
Sau3AI GATC 6 cut(s) 238, 506, 913, 1019, 1202, 1349
SchI GAGTC 3 cut(s) 101, 719, 1156
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 4 cut(s) 136, 247, 746, 1415
SfaNI GCATC 6 cut(s) 421, 443, 610, 650, 1130, 1257
SfcI CTRYAG 3 cut(s) 669, 765, 1151
Sfr274I CTCGAG 2 cut(s) 233, 990
Sfr303I CCGCGG 1 cut(s) 141
SgrBI CCGCGG 1 cut(s) 141
SgrDI CGTCGACG 1 cut(s) 100
SlaI CTCGAG 2 cut(s) 233, 990
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 233, 990
SmoI CTYRAG 2 cut(s) 233, 990
SsiI CCGC 8 cut(s) 129, 138, 140, 204, 229, 780, 799, 946
SspI AATATT 3 cut(s) 446, 462, 718
SspMI CTAG 2 cut(s) 53, 1197
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 1096, 1376
TaiI ACGT 2 cut(s) 74, 107
TaqI TCGA 8 cut(s) 101, 214, 234, 258, 437, 677, 991, 1266
TaqII GACCGA 1 cut(s) 1091
TauI GCSGC 1 cut(s) 782
TfiI GAWTC 4 cut(s) 182, 413, 563, 1193
Tru1I TTAA 5 cut(s) 47, 294, 303, 534, 897
Tru9I TTAA 5 cut(s) 47, 294, 303, 534, 897
TscAI CASTG 2 cut(s) 358, 1408
TseI GCWGC 6 cut(s) 77, 886, 1118, 1259, 1275, 1292
TspDTI ATGAA 4 cut(s) 599, 951, 1218, 1330
TspRI CASTG 2 cut(s) 358, 1408
Tth111I GACNNNGTC 1 cut(s) 70
Van91I CCANNNNNTGG 1 cut(s) 278
VneI GTGCAC 1 cut(s) 1411
XapI RAATTY 3 cut(s) 626, 752, 941
XhoI CTCGAG 2 cut(s) 233, 990
XmiI GTMKAC 1 cut(s) 101
XmnI GAANNNNTTC 1 cut(s) 753
XspI CTAG 2 cut(s) 53, 1197
ZraI GACGTC 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.