Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8325477.1

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 835

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8325477.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 688 bp

atacaggcgggaaaggcgtaatggtgccatatcatctcccttaggaaactataagaaaaactttgaattggcttcctcctcctctgggttggtgcagctttctgttaaggaattgacgagagatcatcatccagacagagatgatgaaaaattccgcgtggaaactgctggtggctatgtggaattgggtggtgtgcctcgagtaaatggtcagctggctatttccagatctattggcgatatttccttcaaaagtttcggcgttatatctacaccagagttgaccgattggcaacccctgactgtaaacgatacctatctcgttgctgcatctgatggagtttttgagaagcagagtctgcaggatgtttgtgatttattgtgggaagctcggagttatgattctaggagatcggagttctcttcctcgccttgttcatactcattagccgactgcatcgtgaatgctgcactcgacaagggcagcatggataatgtggcagctgttgtcgttccaattatatctacttggttttttgaaagttttttcatggaaagatcagtttcagagagggacagaaactgtgaagcattaggactacaaagttccactgatgagtgcacaggtgagtcgaaatcaaactatagaacaaacaactcaacatcattgcatatagtcctttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

228

Amino Acids

25.36

Weight (kDa)

4.99

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	24
AccII	CGCG	1 cut(s)	157
AciI	CCGC	2 cut(s)	8, 155
AcsI	RAATTY	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	3 cut(s)	66, 251, 540
AluBI	AGCT	4 cut(s)	98, 215, 390, 504
AluI	AGCT	4 cut(s)	98, 215, 390, 504
Alw21I	GWGCWC	1 cut(s)	624
Alw44I	GTGCAC	1 cut(s)	620
AlwNI	CAGNNNCTG	2 cut(s)	359, 583
Ama87I	CYCGRG	1 cut(s)	199
ApaLI	GTGCAC	1 cut(s)	620
ApeKI	GCWGC	5 cut(s)	95, 327, 468, 484, 501
ApoI	RAATTY	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	639
AvaI	CYCGRG	1 cut(s)	199
AxyI	CCTNAGG	1 cut(s)	41
BaeGI	GKGCMC	1 cut(s)	624
BanI	GGYRCC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	624
BbvI	GCAGC	5 cut(s)	107, 314, 455, 496, 513
BccI	CCATC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	406
BfmI	CTRYAG	2 cut(s)	360, 644
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	5 cut(s)	96, 328, 469, 485, 502
BlsI	GCNGC	5 cut(s)	97, 329, 470, 486, 503
BmeT110I	CYCGRG	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	26
BmsI	GCATC	2 cut(s)	339, 466
BsaBI	GATNNNNATC	2 cut(s)	127, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse21I	CCTNAGG	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	666
Bse8I	GATNNNNATC	2 cut(s)	127, 316
BseGI	GGATG	2 cut(s)	128, 371
BseJI	GATNNNNATC	2 cut(s)	127, 316
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMI	GCAATG	1 cut(s)	666
BseRI	GAGGAG	2 cut(s)	68, 71
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	5 cut(s)	107, 314, 455, 496, 513
BsgI	GTGCAG	2 cut(s)	114, 454
Bsh1236I	CGCG	1 cut(s)	157
BshNI	GGYRCC	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	624
BsiHKCI	CYCGRG	1 cut(s)	199
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	588
BsmI	GAATGC	1 cut(s)	470
BsoBI	CYCGRG	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	624
Bsp143I	GATC	4 cut(s)	122, 228, 411, 558
BspACI	CCGC	2 cut(s)	8, 155
BspFNI	CGCG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	26
BspMAI	CTGCAG	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	24
BsrDI	GCAATG	1 cut(s)	666
BssMI	GATC	4 cut(s)	122, 228, 411, 558
Bst4CI	ACNGT	2 cut(s)	305, 585
Bst6I	CTCTTC	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	128, 371
BstFNI	CGCG	1 cut(s)	157
BstKTI	GATC	4 cut(s)	125, 231, 414, 561
BstMBI	GATC	4 cut(s)	122, 228, 411, 558
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 359
BstSFI	CTRYAG	2 cut(s)	360, 644
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	1 cut(s)	157
BstV1I	GCAGC	5 cut(s)	107, 314, 455, 496, 513
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
Bsu36I	CCTNAGG	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	128, 371
BtsIMutI	CAGTG	1 cut(s)	610
Cac8I	GCNNGC	1 cut(s)	217
CaiI	CAGNNNCTG	2 cut(s)	359, 583
CviAII	CATG	2 cut(s)	488, 551
CviJI	RGCY	8 cut(s)	72, 98, 175, 215, 219, 390, 450, 504
CviKI_1	RGCY	8 cut(s)	72, 98, 175, 215, 219, 390, 450, 504
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	124, 230, 413, 560
DpnII	GATC	4 cut(s)	122, 228, 411, 558
Eam1104I	CTCTTC	1 cut(s)	428
EarI	CTCTTC	1 cut(s)	428
Eco81I	CCTNAGG	1 cut(s)	41
Eco88I	CYCGRG	1 cut(s)	199
FaeI	CATG	2 cut(s)	491, 554
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	2 cut(s)	487, 550
Fnu4HI	GCNGC	5 cut(s)	96, 328, 469, 485, 502
FokI	GGATG	2 cut(s)	115, 378
Fsp4HI	GCNGC	5 cut(s)	96, 328, 469, 485, 502
FspBI	CTAG	1 cut(s)	406
GluI	GCNGC	5 cut(s)	96, 328, 469, 485, 502
Hin1II	CATG	2 cut(s)	491, 554
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	3 cut(s)	356, 402, 630
HphI	GGTGA	1 cut(s)	639
Hpy166II	GTNNAC	3 cut(s)	283, 308, 622
Hpy188I	TCNGA	4 cut(s)	335, 394, 416, 569
Hpy188III	TCNNGA	3 cut(s)	132, 226, 461
Hpy8I	GTNNAC	3 cut(s)	283, 308, 622
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	305, 585
HpyCH4V	TGCA	7 cut(s)	95, 330, 362, 457, 471, 622, 671
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 359
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	491, 554
Kzo9I	GATC	4 cut(s)	122, 228, 411, 558
LpnPI	CCDG	9 cut(s)	70, 145, 154, 201, 239, 289, 312, 348, 610
Lsp1109I	GCAGC	5 cut(s)	107, 314, 455, 496, 513
LweI	GCATC	2 cut(s)	339, 466
MaeI	CTAG	1 cut(s)	406
MalI	GATC	4 cut(s)	124, 230, 413, 560
MboI	GATC	4 cut(s)	122, 228, 411, 558
MboII	GAAGA	1 cut(s)	415
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	624
MluCI	AATT	5 cut(s)	66, 111, 150, 183, 517
MlyI	GAGTC	2 cut(s)	365, 639
MnlI	CCTC	6 cut(s)	86, 89, 92, 208, 437, 565
MseI	TTAA	1 cut(s)	106
MspA1I	CMGCKG	2 cut(s)	215, 504
Mva1269I	GAATGC	1 cut(s)	470
MvnI	CGCG	1 cut(s)	157
MwoI	GCNNNNNNNGC	2 cut(s)	14, 359
NdeII	GATC	4 cut(s)	122, 228, 411, 558
NlaIII	CATG	2 cut(s)	491, 554
NlaIV	GGNNCC	1 cut(s)	26
PaeR7I	CTCGAG	1 cut(s)	199
PctI	GAATGC	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	402
PkrI	GCNGC	5 cut(s)	97, 329, 470, 486, 503
PleI	GAGTC	2 cut(s)	364, 638
PpsI	GAGTC	2 cut(s)	364, 638
PspN4I	GGNNCC	1 cut(s)	26
PspXI	VCTCGAGB	1 cut(s)	199
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	2 cut(s)	359, 583
PsuI	RGATCY	1 cut(s)	228
PvuII	CAGCTG	2 cut(s)	215, 504
SaqAI	TTAA	1 cut(s)	106
SatI	GCNGC	5 cut(s)	96, 328, 469, 485, 502
Sau3AI	GATC	4 cut(s)	122, 228, 411, 558
SchI	GAGTC	2 cut(s)	365, 639
SduI	GDGCHC	1 cut(s)	624
SetI	ASST	6 cut(s)	100, 217, 318, 392, 506, 629
SfaNI	GCATC	2 cut(s)	339, 466
SfcI	CTRYAG	2 cut(s)	360, 644
Sfr274I	CTCGAG	1 cut(s)	199
SlaI	CTCGAG	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	5 cut(s)	66, 111, 150, 183, 517
SsiI	CCGC	2 cut(s)	8, 155
SspMI	CTAG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	305, 585
TaqI	TCGA	3 cut(s)	200, 475, 633
TaqII	GACCGA	1 cut(s)	300
TasI	AATT	5 cut(s)	66, 111, 150, 183, 517
TfiI	GAWTC	1 cut(s)	402
Tru1I	TTAA	1 cut(s)	106
Tru9I	TTAA	1 cut(s)	106
TscAI	CASTG	1 cut(s)	617
TseI	GCWGC	5 cut(s)	95, 327, 468, 484, 501
TspDTI	ATGAA	3 cut(s)	160, 427, 539
TspRI	CASTG	1 cut(s)	617
VneI	GTGCAC	1 cut(s)	620
XapI	RAATTY	1 cut(s)	150
XhoI	CTCGAG	1 cut(s)	199
XspI	CTAG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.