Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Forward (+)

17839389 .. 17840114

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAAAAACTTAGGTTGTTCTGTCATCAGTTTTGGTGTTGTATCAGAACCGGAGTTGACAGATTGGCAACCCCTGACTTTAAATGATACGTATCTTGTGGCTACATCTGACGGAGTTTTTGAGAAGCTGAACTTGCAGGCTTTTTGCGATCTGTTGCGGGAAGCACGAAGTCATCATCCTACGAAATTGGAGCTCTCTTCGGCAGGTTCATACTCATTAGCTGACCGCATTGTAAGTACTGCATTTGAAAAGGGCAGTATGGATAATATGGCAGGTGTTGTAGTTCCATTGGCATCTTCTGGTTTTTCTCAACCGGAGCCATTGCTACGTGTTTTCTCATTTGCAGCTAACAACTCCTCTTTAGTTCATACAGGATCGATCTGTTATATGTTTTGCATTCTTTCGCAACTCGCTTGTTTTTCTCTCATACAATCAAATGTGCCAATCAAATGTACATACATTAGAAATGACTTATACGAAAGATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

164

Amino Acids

17.96

Weight (kDa)

5.26

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	263
Acc36I	ACCTGC	2 cut(s)	194, 263
AciI	CCGC	2 cut(s)	157, 226
AclWI	GGATC	1 cut(s)	382
AfaI	GTAC	2 cut(s)	238, 454
AflIII	ACRYGT	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	248
AluBI	AGCT	4 cut(s)	127, 193, 221, 347
AluI	AGCT	4 cut(s)	127, 193, 221, 347
Alw21I	GWGCWC	1 cut(s)	195
AlwI	GGATC	1 cut(s)	382
ApeKI	GCWGC	1 cut(s)	344
ArsI	GACNNNNNNTTYG	2 cut(s)	101, 133
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	356
BfuAI	ACCTGC	2 cut(s)	194, 263
BisI	GCNGC	1 cut(s)	345
BlsI	GCNGC	1 cut(s)	346
BmcAI	AGTACT	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	318
BmsI	GCATC	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	377
BsaAI	YACGTR	2 cut(s)	90, 329
BsaBI	GATNNNNATC	1 cut(s)	90
BsaWI	WCCGGW	2 cut(s)	49, 313
Bse3DI	GCAATG	1 cut(s)	320
Bse8I	GATNNNNATC	1 cut(s)	90
BseCI	ATCGAT	1 cut(s)	377
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	320
BseRI	GAGGAG	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	50, 314
BsmI	GAATGC	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp1407I	TGTACA	1 cut(s)	452
Bsp143I	GATC	3 cut(s)	148, 374, 378
BspACI	CCGC	2 cut(s)	157, 226
BspDI	ATCGAT	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	318
BspMI	ACCTGC	2 cut(s)	194, 263
BspPI	GGATC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	320
BsrGI	TGTACA	1 cut(s)	452
BssMI	GATC	3 cut(s)	148, 374, 378
Bst6I	CTCTTC	1 cut(s)	202
BstAUI	TGTACA	1 cut(s)	452
BstBAI	YACGTR	2 cut(s)	90, 329
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	3 cut(s)	151, 377, 381
BstMBI	GATC	3 cut(s)	148, 374, 378
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstSNI	TACGTA	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	356
Bsu15I	ATCGAT	1 cut(s)	377
BsuTUI	ATCGAT	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	175
BveI	ACCTGC	2 cut(s)	194, 263
Cac8I	GCNNGC	1 cut(s)	138
ClaI	ATCGAT	1 cut(s)	377
Csp6I	GTAC	2 cut(s)	237, 453
CviJI	RGCY	7 cut(s)	101, 127, 140, 193, 221, 319, 347
CviKI_1	RGCY	7 cut(s)	101, 127, 140, 193, 221, 319, 347
CviQI	GTAC	2 cut(s)	237, 453
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	3 cut(s)	150, 376, 380
DpnII	GATC	3 cut(s)	148, 374, 378
DraI	TTTAAA	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	193
Eco105I	TACGTA	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	195
Eco53kI	GAGCTC	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	195
FaiI	YATR	9 cut(s)	211, 260, 269, 369, 387, 389, 428, 457, 475
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FauI	CCCGC	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	345
FokI	GGATG	1 cut(s)	162
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	345
GluI	GCNGC	1 cut(s)	345
HapII	CCGG	2 cut(s)	50, 314
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HpaII	CCGG	2 cut(s)	50, 314
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	46, 109, 491
Hpy8I	GTNNAC	1 cut(s)	57
HpyCH4IV	ACGT	2 cut(s)	89, 328
HpyCH4V	TGCA	4 cut(s)	136, 242, 344, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	2 cut(s)	89, 328
Kzo9I	GATC	3 cut(s)	148, 374, 378
LmnI	GCTCC	2 cut(s)	190, 316
LpnPI	CCDG	8 cut(s)	63, 86, 122, 189, 258, 285, 327, 357
Lsp1109I	GCAGC	1 cut(s)	356
LweI	GCATC	1 cut(s)	302
MaeII	ACGT	2 cut(s)	89, 328
MalI	GATC	3 cut(s)	150, 376, 380
MboI	GATC	3 cut(s)	148, 374, 378
MboII	GAAGA	2 cut(s)	189, 288
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	1 cut(s)	185
MnlI	CCTC	1 cut(s)	367
MseI	TTAA	1 cut(s)	80
MspI	CCGG	2 cut(s)	50, 314
Mva1269I	GAATGC	1 cut(s)	396
MwoI	GCNNNNNNNGC	1 cut(s)	133
NdeII	GATC	3 cut(s)	148, 374, 378
NlaIV	GGNNCC	1 cut(s)	318
PaqCI	CACCTGC	1 cut(s)	263
PctI	GAATGC	1 cut(s)	396
PkrI	GCNGC	1 cut(s)	346
Ppu21I	YACGTR	2 cut(s)	90, 329
Psp124BI	GAGCTC	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	318
RsaI	GTAC	2 cut(s)	238, 454
RsaNI	GTAC	2 cut(s)	237, 453
SacI	GAGCTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	1 cut(s)	345
Sau3AI	GATC	3 cut(s)	148, 374, 378
ScaI	AGTACT	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	9 cut(s)	16, 92, 129, 195, 208, 223, 277, 331, 349
SfaNI	GCATC	1 cut(s)	302
SnaBI	TACGTA	1 cut(s)	90
Sse9I	AATT	1 cut(s)	185
SsiI	CCGC	2 cut(s)	157, 226
SstI	GAGCTC	1 cut(s)	195
TaiI	ACGT	2 cut(s)	92, 331
TaqI	TCGA	1 cut(s)	377
TasI	AATT	1 cut(s)	185
TatI	WGTACW	2 cut(s)	236, 452
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseI	GCWGC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	17, 198, 356
TspGWI	ACGGA	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.