Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Reverse (-)

25179879 .. 25181962

Gene Structure 2084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023556

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTGGGCGATAGATTGGGATGGGAGGCTGTTGGTTCCCAATCTGCTTTCCTTCCAAGCAGTGTTGCCGACCTCTTCTTGGTGGCTTCGATCTAGTTGTTTGGGTGAACCCTTGTCGGGTTTTGCTGGGTTTCCAGTTTTGGGGCTCTTGATGGGTGGTGACGCTCCGTTGACGGCATCCGAGATCGGCAATGACGTGTTTCAGGTGGTGCGACTTGATTCTGGAGGTGCTAGTTTGGCAGTGGCGGCGCTTGGTTGTGCACATATGGCTGCTATACAAAGGATTGGGGCGGGGCCTGTTGGGCCGATCTGCTGGGTTTTGAGCCCACTGTTTTCTTTAGGCTGCTTCTTGGACTTAGCCTCTTACGACGAGTCGTCGTCAACATGTTTGACGCTTTACGAACAAGGCGGTGCTCCAGCGGTTTTTCAATCCCCAAAATGCCCTAGCTGGAAGCACGCCGATTCCCTCCGGCGTTGCCAAATCGCCATGCGTCAAGGTCGGAGAAACCACCTCGAGGATCTTGCTCTGTGCGCTCTCGACCTTCGCATTCCGTTTCCTGGTGAATTAGGGATTAAGGAGGTTAAAGTTGGGATTGTGGCTGTTTTTGATGGGCATAATGGTGCTGAAGCAAGTGATATGGCTTCAAGGCTTTTATTGGAGTATTTCGTTTTGCATACCTATTTTCTTCTTGATGGGCATAATGTGGCAGCTGTTGTCGTTCCATTGATATCTACTAGGTTTTTTGAAAGTTTTCTGATGGAAAGATCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

258

Amino Acids

27.7

Weight (kDa)

5.3

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	512
AciI	CCGC	4 cut(s)	245, 290, 408, 419
AclWI	GGATC	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	645
AfiI	CCNNNNNNNGG	5 cut(s)	78, 116, 140, 514, 557
AflIII	ACRYGT	2 cut(s)	195, 383
AgsI	TTSAA	3 cut(s)	428, 645, 746
AhdI	GACNNNNNGTC	1 cut(s)	373
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	2 cut(s)	447, 710
AluI	AGCT	2 cut(s)	447, 710
Alw21I	GWGCWC	2 cut(s)	262, 415
Alw44I	GTGCAC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	525
Ama87I	CYCGRG	1 cut(s)	512
AoxI	GGCC	2 cut(s)	293, 302
ApaLI	GTGCAC	1 cut(s)	258
ApeKI	GCWGC	3 cut(s)	269, 342, 707
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	2 cut(s)	250, 533
AspS9I	GGNCC	2 cut(s)	293, 302
AsuHPI	GGTGA	3 cut(s)	116, 170, 572
AvaI	CYCGRG	1 cut(s)	512
BaeGI	GKGCMC	1 cut(s)	262
BanII	GRGCYC	2 cut(s)	147, 326
Bbv12I	GWGCWC	2 cut(s)	262, 415
BbvI	GCAGC	3 cut(s)	256, 329, 719
BccI	CCATC	5 cut(s)	14, 145, 602, 686, 751
BceAI	ACGGC	1 cut(s)	189
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	1 cut(s)	558
BfaI	CTAG	4 cut(s)	93, 231, 444, 735
BfoI	RGCGCY	1 cut(s)	251
BglI	GCCNNNNNGGC	1 cut(s)	301
BisI	GCNGC	4 cut(s)	246, 270, 343, 708
BlsI	GCNGC	4 cut(s)	247, 271, 344, 709
Bme1390I	CCNGG	1 cut(s)	558
BmeRI	GACNNNNNGTC	1 cut(s)	373
BmeT110I	CYCGRG	1 cut(s)	512
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	293, 302
BmiI	GGNNCC	2 cut(s)	36, 294
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	1 cut(s)	185
BpmI	CTGGAG	2 cut(s)	243, 399
Bsc4I	CCNNNNNNNGG	5 cut(s)	78, 116, 140, 514, 557
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	558
BseGI	GGATG	2 cut(s)	25, 176
BseLI	CCNNNNNNNGG	5 cut(s)	78, 116, 140, 514, 557
BseMI	GCAATG	1 cut(s)	196
BseNI	ACTGG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	3 cut(s)	256, 329, 719
BseYI	CCCAGC	2 cut(s)	125, 312
BshFI	GGCC	2 cut(s)	295, 304
BsiHKAI	GWGCWC	2 cut(s)	262, 415
BsiHKCI	CYCGRG	1 cut(s)	512
BsiSI	CCGG	1 cut(s)	469
BslI	CCNNNNNNNGG	5 cut(s)	78, 116, 140, 514, 557
BsmI	GAATGC	1 cut(s)	546
BsnI	GGCC	2 cut(s)	295, 304
BsoBI	CYCGRG	1 cut(s)	512
Bsp1286I	GDGCHC	4 cut(s)	147, 262, 326, 415
Bsp143I	GATC	5 cut(s)	89, 183, 306, 517, 764
BspACI	CCGC	4 cut(s)	245, 290, 408, 419
BspANI	GGCC	2 cut(s)	295, 304
BspLI	GGNNCC	2 cut(s)	36, 294
BspPI	GGATC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	134
BssMI	GATC	5 cut(s)	89, 183, 306, 517, 764
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	355
BstF5I	GGATG	2 cut(s)	25, 176
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	2 cut(s)	250, 533
BstKTI	GATC	5 cut(s)	92, 186, 309, 520, 767
BstMBI	GATC	5 cut(s)	89, 183, 306, 517, 764
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 245, 266, 301, 530
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	556
BstSLI	GKGCMC	1 cut(s)	262
BstV1I	GCAGC	3 cut(s)	256, 329, 719
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	2 cut(s)	295, 304
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	2 cut(s)	25, 176
BtsI	GCAGTG	2 cut(s)	66, 246
BtsIMutI	CAGTG	3 cut(s)	66, 246, 326
Cac8I	GCNNGC	1 cut(s)	456
CfoI	GCGC	2 cut(s)	250, 533
Cfr13I	GGNCC	2 cut(s)	293, 302
CseI	GACGC	3 cut(s)	170, 400, 479
CviAII	CATG	2 cut(s)	384, 487
DdeI	CTNAG	1 cut(s)	355
DpnI	GATC	5 cut(s)	91, 185, 308, 519, 766
DpnII	GATC	5 cut(s)	89, 183, 306, 517, 764
DriI	GACNNNNNGTC	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	79
Eam1105I	GACNNNNNGTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	79
Eco24I	GRGCYC	2 cut(s)	147, 326
Eco32I	GATATC	1 cut(s)	729
Eco57I	CTGAAG	1 cut(s)	645
Eco88I	CYCGRG	1 cut(s)	512
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	556
EcoRV	GATATC	1 cut(s)	729
EcoT38I	GRGCYC	2 cut(s)	147, 326
FaeI	CATG	2 cut(s)	387, 490
FaiI	YATR	9 cut(s)	264, 266, 275, 385, 488, 615, 638, 675, 699
FatI	CATG	2 cut(s)	383, 486
FauI	CCCGC	1 cut(s)	283
FauNDI	CATATG	1 cut(s)	264
Fnu4HI	GCNGC	4 cut(s)	246, 270, 343, 708
FokI	GGATG	2 cut(s)	32, 163
FriOI	GRGCYC	2 cut(s)	147, 326
Fsp4HI	GCNGC	4 cut(s)	246, 270, 343, 708
FspBI	CTAG	4 cut(s)	93, 231, 444, 735
GlaI	GCGC	2 cut(s)	249, 532
GluI	GCNGC	4 cut(s)	246, 270, 343, 708
GsaI	CCCAGC	2 cut(s)	129, 316
GsuI	CTGGAG	2 cut(s)	243, 399
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	295, 304
HapII	CCGG	1 cut(s)	469
HgaI	GACGC	3 cut(s)	170, 400, 479
HhaI	GCGC	2 cut(s)	250, 533
Hin1II	CATG	2 cut(s)	387, 490
Hin6I	GCGC	2 cut(s)	248, 531
HinP1I	GCGC	2 cut(s)	248, 531
HincII	GTYRAC	2 cut(s)	171, 381
HindII	GTYRAC	2 cut(s)	171, 381
HinfI	GANTC	3 cut(s)	218, 371, 461
HpaII	CCGG	1 cut(s)	469
HphI	GGTGA	3 cut(s)	116, 170, 572
Hpy166II	GTNNAC	4 cut(s)	107, 171, 260, 381
Hpy188I	TCNGA	3 cut(s)	181, 501, 756
Hpy188III	TCNNGA	4 cut(s)	148, 222, 536, 689
Hpy8I	GTNNAC	4 cut(s)	107, 171, 260, 381
Hpy99I	CGWCG	2 cut(s)	371, 379
HpyAV	CCTTC	2 cut(s)	61, 551
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	260, 673
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 245, 266, 301, 530
HpyF3I	CTNAG	1 cut(s)	355
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	387, 490
HspAI	GCGC	2 cut(s)	248, 531
Kzo9I	GATC	5 cut(s)	89, 183, 306, 517, 764
LmnI	GCTCC	2 cut(s)	169, 418
Lsp1109I	GCAGC	3 cut(s)	256, 329, 719
LweI	GCATC	1 cut(s)	185
MaeI	CTAG	4 cut(s)	93, 231, 444, 735
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	5 cut(s)	91, 185, 308, 519, 766
MboI	GATC	5 cut(s)	89, 183, 306, 517, 764
MboII	GAAGA	2 cut(s)	66, 677
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	4 cut(s)	147, 262, 326, 415
MluCI	AATT	1 cut(s)	563
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	479
MnlI	CCTC	8 cut(s)	18, 82, 218, 370, 476, 508, 521, 571
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	3 cut(s)	573, 582, 772
MslI	CAYNNNNRTG	1 cut(s)	618
MspA1I	CMGCKG	2 cut(s)	419, 710
MspI	CCGG	1 cut(s)	469
MspR9I	CCNGG	1 cut(s)	558
Mva1269I	GAATGC	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	558
MwoI	GCNNNNNNNGC	5 cut(s)	236, 245, 266, 301, 530
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	5 cut(s)	89, 183, 306, 517, 764
NlaIII	CATG	2 cut(s)	387, 490
NlaIV	GGNNCC	2 cut(s)	36, 294
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	387
PaeR7I	CTCGAG	1 cut(s)	512
PciI	ACATGT	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	2 cut(s)	218, 461
PkrI	GCNGC	4 cut(s)	247, 271, 344, 709
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
PscI	ACATGT	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	556
PspFI	CCCAGC	2 cut(s)	125, 312
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	2 cut(s)	36, 294
PspPI	GGNCC	2 cut(s)	293, 302
PspXI	VCTCGAGB	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	710
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	3 cut(s)	573, 582, 772
SatI	GCNGC	4 cut(s)	246, 270, 343, 708
Sau3AI	GATC	5 cut(s)	89, 183, 306, 517, 764
Sau96I	GGNCC	2 cut(s)	293, 302
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	4 cut(s)	147, 262, 326, 415
SfaNI	GCATC	1 cut(s)	185
SfiI	GGCCNNNNNGGCC	1 cut(s)	301
Sfr274I	CTCGAG	1 cut(s)	512
SlaI	CTCGAG	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	618
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	1 cut(s)	563
SsiI	CCGC	4 cut(s)	245, 290, 408, 419
SspMI	CTAG	4 cut(s)	93, 231, 444, 735
StyD4I	CCNGG	1 cut(s)	556
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	3 cut(s)	88, 513, 537
TasI	AATT	1 cut(s)	563
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	2 cut(s)	218, 461
Tru1I	TTAA	3 cut(s)	573, 582, 772
Tru9I	TTAA	3 cut(s)	573, 582, 772
TscAI	CASTG	3 cut(s)	66, 246, 333
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	269, 342, 707
Tsp45I	GTSAC	1 cut(s)	158
TspGWI	ACGGA	2 cut(s)	156, 540
TspRI	CASTG	3 cut(s)	66, 246, 333
VneI	GTGCAC	1 cut(s)	258
XceI	RCATGY	1 cut(s)	387
XhoI	CTCGAG	1 cut(s)	512
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	4 cut(s)	93, 231, 444, 735

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.