Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000935

Physical Location & Seq

Genomic Coordinates Forward (+)

17819658 .. 17821367

Gene Structure 1710 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g17610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGAGGACGTTAGAGTTGGAGTTGCTGCTGTTTTTGATGGTCATAATGGTGCTGAAGCTAGTGATATGGCTTACAAGCTTTTCTTGGAGTACTTCGTTTTGCATACCTACTTTCTTCTAGATGCATCGCTTTTCGCTGCGTCACCTGGAACACCAACATTGCAAACTTGGCATGGCTTACTCGATCGGCACCAATTGGACATTGCAAGGTTTAAGCATTCGTTGCAAGGAAACTTTGACGATTCTTTTCGCTTTGACATCTTGAAAGAAGCATTGTTGAGGGCAGTTCATGACATCGATGCAAAATTTTCGAAGGTTGCATTTATGGAGAATCTAAGTTCCGGTTCTACTGCCACGATTATACTACTTTTGGATGGCCAAATCTTAGTTGCCAATATTGGAGACTCAAAGGCCTTTTTGTGCTCGGAAAATTTTCAAAATCCTGCAGAGGCTAAAGCTGCTTATTTAAGATTATACATGGAGGAAAGGCGTAATGGTGTTATCTCACATCGAAGGCGCAATAAAAACTTTGAATTGGCTCCTGCGGATGAGTTGGTGCATTTATCTGTTAAGGAATTGACAAGAGATCATCATCCGGACAGAGATGATGAAAAACTTAGTGTGGAAAGTGCTGGTGGAAATGTTCTTGAAAGGGCTGGTGTGCCTCGAGTAAATGGTCAGCTGGCTGTTACCCGATCTATTGGCGACATCTCCCTTAAAAGTTTTGGTGTTATATCAGAACCGGAGTTGACAGATTGGCAACCCCTGACTGTAAATGATACCTATCTGGTTGCTACATCTGATGGAGTTTTTGAGAAGCAGAACTTGCAGGATGTTTGCCATCTGTTGTGGGAAGCACGAAGTCATCATCCTACGAAATTGGAGCTCTCTTCCTCAGCTTCATACTCATTAGCTGACCGCATTGTAAGTACTGCATTTGAAAGGGGAAGCATGGATAATATGGCAGGTGTTGTAGTTCCATTGGCATCTTCTGGTTTTTCTCAACCGGAGCCATTGCTACGTGTTTTCTCATTTGCAGCTAACAACTCCTCTTTAGTTCATACAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C Pkinase

Protein Analysis

357

Amino Acids

39.36

Weight (kDa)

5.43

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	86 - 144	2.3e-07	Protein phosphatase 2C
PP2C	PF00481	191 - 321	2.7e-21	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63320 AT3G63320 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340 AT3G63340
fragaria_vesca	FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010 FvH4_2g23010
malus_domestica	MD00G1147300.v1.1 MD00G1147600.v1.1 MD00G1147700.v1.1 MD00G1147800.v1.1 MD03G1258500.v1.1 MD08G1204000.v1.1
prunus_persica	Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1 Prupe.8G235000_v2.0.a1
pyrus_communis	pycom03g20470 pycom08g17600 pycom08g17610 pycom08g17640 pycom08g17650 pycom08g17660
rosa_chinensis	RchiOBHm_Chr3g0479641 RchiOBHm_Chr6g0290051
rosa_laevigata	RLG00000012250 RLG00000023551 RLG00000023553 RLG00000023556 RLG00000029889
rosa_multiflora	Rmu_co8325477.1_g000001 Rmu_sc0001775.1_g000013 Rmu_sc0002902.1_g000039
rosa_roxburghii	Rroxscaffold_6G00402100 Rroxscaffold_6G00402120 Rroxscaffold_7G00177390
rosa_rugosa	Rorug03G0176900 Rorug03G0177000 Rorug06G0209000 Rorug06G0209100
rosa_samantha	Rh3AG227700 Rh3BG260800 Rh3BG261000 Rh3CG258100 Rh3DG254200 Rh6AG320000 Rh6BG327200 Rh6CG332900 Rh6DG318800
rosa_wichuraiana	Rw3G020380 Rw6G027610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	956
Acc36I	ACCTGC	1 cut(s)	956
AccB1I	GGYRCC	1 cut(s)	189
AccIII	TCCGGA	1 cut(s)	595
AciI	CCGC	2 cut(s)	545, 919
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	2 cut(s)	305, 430
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	92, 931
AflIII	ACRYGT	1 cut(s)	1021
AgsI	TTSAA	5 cut(s)	265, 437, 533, 650, 941
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	8 cut(s)	59, 79, 458, 682, 886, 899, 914, 1040
AluI	AGCT	8 cut(s)	59, 79, 458, 682, 886, 899, 914, 1040
Alw21I	GWGCWC	2 cut(s)	425, 888
Alw26I	GTCTC	1 cut(s)	396
Ama87I	CYCGRG	1 cut(s)	666
Aor13HI	TCCGGA	1 cut(s)	595
AoxI	GGCC	2 cut(s)	376, 411
ApeKI	GCWGC	4 cut(s)	26, 137, 458, 1037
ApoI	RAATTY	2 cut(s)	305, 430
Asp700I	GAANNNNTTC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	519
AsuHPI	GGTGA	1 cut(s)	135
AsuII	TTCGAA	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	666
BalI	TGGCCA	1 cut(s)	378
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	888
Bbv12I	GWGCWC	2 cut(s)	425, 888
BbvCI	CCTCAGC	1 cut(s)	895
BbvI	GCAGC	4 cut(s)	13, 124, 445, 1049
BccI	CCATC	4 cut(s)	32, 368, 797, 849
BcgI	CGANNNNNNTGC	2 cut(s)	291, 325
BciT130I	CCWGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	2 cut(s)	60, 119
BfmI	CTRYAG	1 cut(s)	444
BfuAI	ACCTGC	1 cut(s)	956
BisI	GCNGC	4 cut(s)	27, 138, 459, 1038
BlsI	GCNGC	4 cut(s)	28, 139, 460, 1039
BmcAI	AGTACT	2 cut(s)	92, 931
Bme1390I	CCNGG	1 cut(s)	147
BmeT110I	CYCGRG	1 cut(s)	666
BmiI	GGNNCC	3 cut(s)	191, 540, 1011
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	4 cut(s)	112, 134, 289, 995
Bpu10I	CCTNAGC	1 cut(s)	895
Bpu14I	TTCGAA	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	1022
BsaBI	GATNNNNATC	2 cut(s)	591, 783
BsaWI	WCCGGW	4 cut(s)	341, 595, 742, 1006
Bse3DI	GCAATG	3 cut(s)	158, 201, 1013
Bse8I	GATNNNNATC	2 cut(s)	591, 783
BseAI	TCCGGA	1 cut(s)	595
BseBI	CCWGG	1 cut(s)	147
BseCI	ATCGAT	1 cut(s)	297
BseGI	GGATG	5 cut(s)	379, 553, 592, 838, 868
BseJI	GATNNNNATC	2 cut(s)	591, 783
BseMI	GCAATG	3 cut(s)	158, 201, 1013
BseMII	CTCAG	1 cut(s)	909
BseRI	GAGGAG	1 cut(s)	1039
BseXI	GCAGC	4 cut(s)	13, 124, 445, 1049
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	378, 413
BshNI	GGYRCC	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	297
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	2 cut(s)	425, 888
BsiHKCI	CYCGRG	1 cut(s)	666
BsiSI	CCGG	4 cut(s)	342, 596, 743, 1007
BsmAI	GTCTC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	378, 413
BsoBI	CYCGRG	1 cut(s)	666
Bsp119I	TTCGAA	1 cut(s)	311
Bsp1286I	GDGCHC	2 cut(s)	425, 888
Bsp13I	TCCGGA	1 cut(s)	595
Bsp143I	GATC	3 cut(s)	184, 586, 695
BspACI	CCGC	2 cut(s)	545, 919
BspANI	GGCC	2 cut(s)	378, 413
BspCNI	CTCAG	1 cut(s)	908
BspDI	ATCGAT	1 cut(s)	297
BspEI	TCCGGA	1 cut(s)	595
BspHI	TCATGA	1 cut(s)	289
BspLI	GGNNCC	3 cut(s)	191, 540, 1011
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	956
BspT104I	TTCGAA	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	189
BsrDI	GCAATG	3 cut(s)	158, 201, 1013
BssMI	GATC	3 cut(s)	184, 586, 695
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	1 cut(s)	895
BstAPI	GCANNNNNTGC	2 cut(s)	223, 826
BstBAI	YACGTR	1 cut(s)	1022
BstBI	TTCGAA	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	684
BstDEI	CTNAG	4 cut(s)	335, 385, 617, 895
BstF5I	GGATG	5 cut(s)	379, 553, 592, 838, 868
BstHHI	GCGC	1 cut(s)	519
BstKTI	GATC	3 cut(s)	187, 589, 698
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	3 cut(s)	184, 586, 695
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 223, 458, 826
BstNI	CCWGG	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	4 cut(s)	13, 124, 445, 1049
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	378, 413
BsuTUI	ATCGAT	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	5 cut(s)	379, 553, 592, 838, 868
BveI	ACCTGC	1 cut(s)	956
Cac8I	GCNNGC	1 cut(s)	684
CciI	TCATGA	1 cut(s)	289
CfoI	GCGC	1 cut(s)	519
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	91, 930
CviAII	CATG	4 cut(s)	173, 290, 478, 952
CviQI	GTAC	2 cut(s)	91, 930
DdeI	CTNAG	4 cut(s)	335, 385, 617, 895
DpnI	GATC	3 cut(s)	186, 588, 697
DpnII	GATC	3 cut(s)	184, 586, 695
EaeI	YGGCCR	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	895
EarI	CTCTTC	1 cut(s)	895
Ecl136II	GAGCTC	1 cut(s)	886
Eco147I	AGGCCT	1 cut(s)	413
Eco24I	GRGCYC	1 cut(s)	888
Eco53kI	GAGCTC	1 cut(s)	886
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	666
EcoICRI	GAGCTC	1 cut(s)	886
EcoRII	CCWGG	1 cut(s)	145
EcoT22I	ATGCAT	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	888
FaeI	CATG	4 cut(s)	176, 293, 481, 955
FalI	AAGNNNNNCTT	4 cut(s)	68, 100, 809, 841
FatI	CATG	4 cut(s)	172, 289, 477, 951
Fnu4HI	GCNGC	4 cut(s)	27, 138, 459, 1038
FokI	GGATG	5 cut(s)	386, 560, 579, 845, 855
FriOI	GRGCYC	1 cut(s)	888
Fsp4HI	GCNGC	4 cut(s)	27, 138, 459, 1038
FspBI	CTAG	2 cut(s)	60, 119
GlaI	GCGC	1 cut(s)	518
GluI	GCNGC	4 cut(s)	27, 138, 459, 1038
HaeIII	GGCC	2 cut(s)	378, 413
HapII	CCGG	4 cut(s)	342, 596, 743, 1007
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	519
Hin1II	CATG	4 cut(s)	176, 293, 481, 955
Hin6I	GCGC	1 cut(s)	517
HinP1I	GCGC	1 cut(s)	517
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	3 cut(s)	242, 331, 404
HpaII	CCGG	4 cut(s)	342, 596, 743, 1007
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	1 cut(s)	750
Hpy188I	TCNGA	3 cut(s)	427, 739, 802
Hpy188III	TCNNGA	5 cut(s)	119, 262, 290, 596, 647
Hpy8I	GTNNAC	1 cut(s)	750
HpyAV	CCTTC	2 cut(s)	307, 507
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4IV	ACGT	2 cut(s)	9, 1021
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 223, 458, 826
HpyF3I	CTNAG	4 cut(s)	335, 385, 617, 895
HpySE526I	ACGT	2 cut(s)	9, 1021
Hsp92II	CATG	4 cut(s)	176, 293, 481, 955
HspAI	GCGC	1 cut(s)	517
Kpn2I	TCCGGA	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	184, 586, 695
LmnI	GCTCC	3 cut(s)	544, 883, 1009
Lsp1109I	GCAGC	4 cut(s)	13, 124, 445, 1049
LweI	GCATC	4 cut(s)	112, 134, 289, 995
MaeI	CTAG	2 cut(s)	60, 119
MaeII	ACGT	2 cut(s)	9, 1021
MaeIII	GTNAC	2 cut(s)	141, 688
MalI	GATC	3 cut(s)	186, 588, 697
MboI	GATC	3 cut(s)	184, 586, 695
MboII	GAAGA	3 cut(s)	107, 882, 981
MfeI	CAATTG	1 cut(s)	194
MhlI	GDGCHC	2 cut(s)	425, 888
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	6 cut(s)	194, 305, 430, 533, 575, 878
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	6 cut(s)	273, 442, 475, 675, 904, 1060
Mox20I	TGGCCA	1 cut(s)	378
Mph1103I	ATGCAT	1 cut(s)	127
MroI	TCCGGA	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	432
MscI	TGGCCA	1 cut(s)	378
MseI	TTAA	4 cut(s)	213, 467, 570, 717
MslI	CAYNNNNRTG	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	682
MspI	CCGG	4 cut(s)	342, 596, 743, 1007
MspR9I	CCNGG	1 cut(s)	147
MunI	CAATTG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	4 cut(s)	169, 223, 458, 826
NdeII	GATC	3 cut(s)	184, 586, 695
NlaIII	CATG	4 cut(s)	176, 293, 481, 955
NlaIV	GGNNCC	3 cut(s)	191, 540, 1011
NmuCI	GTSAC	1 cut(s)	141
NsiI	ATGCAT	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	311
PaeR7I	CTCGAG	1 cut(s)	666
PagI	TCATGA	1 cut(s)	289
PaqCI	CACCTGC	1 cut(s)	956
PceI	AGGCCT	1 cut(s)	413
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	242, 331
PkrI	GCNGC	4 cut(s)	28, 139, 460, 1039
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
Ppu21I	YACGTR	1 cut(s)	1022
Psp124BI	GAGCTC	1 cut(s)	888
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	3 cut(s)	191, 540, 1011
PspXI	VCTCGAGB	1 cut(s)	666
PstI	CTGCAG	1 cut(s)	448
PvuI	CGATCG	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	682
RsaI	GTAC	2 cut(s)	92, 931
RsaNI	GTAC	2 cut(s)	91, 930
RseI	CAYNNNNRTG	1 cut(s)	48
SacI	GAGCTC	1 cut(s)	888
SaqAI	TTAA	4 cut(s)	213, 467, 570, 717
SatI	GCNGC	4 cut(s)	27, 138, 459, 1038
Sau3AI	GATC	3 cut(s)	184, 586, 695
ScaI	AGTACT	2 cut(s)	92, 931
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	2 cut(s)	425, 888
SfaNI	GCATC	4 cut(s)	112, 134, 289, 995
SfcI	CTRYAG	1 cut(s)	444
Sfr274I	CTCGAG	1 cut(s)	666
SfuI	TTCGAA	1 cut(s)	311
SlaI	CTCGAG	1 cut(s)	666
SmiMI	CAYNNNNRTG	1 cut(s)	48
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
Sse9I	AATT	6 cut(s)	194, 305, 430, 533, 575, 878
SseBI	AGGCCT	1 cut(s)	413
SsiI	CCGC	2 cut(s)	545, 919
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	2 cut(s)	60, 119
SstI	GAGCTC	1 cut(s)	888
StuI	AGGCCT	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	145
TaaI	ACNGT	1 cut(s)	772
TaiI	ACGT	2 cut(s)	12, 1024
TaqI	TCGA	5 cut(s)	183, 297, 311, 511, 667
TasI	AATT	6 cut(s)	194, 305, 430, 533, 575, 878
TatI	WGTACW	2 cut(s)	90, 929
TfiI	GAWTC	2 cut(s)	242, 331
Tru1I	TTAA	4 cut(s)	213, 467, 570, 717
Tru9I	TTAA	4 cut(s)	213, 467, 570, 717
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	4 cut(s)	26, 137, 458, 1037
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	4 cut(s)	278, 624, 891, 1049
XapI	RAATTY	2 cut(s)	305, 430
XbaI	TCTAGA	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	666
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	2 cut(s)	60, 119
ZrmI	AGTACT	2 cut(s)	92, 931
Zsp2I	ATGCAT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.